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Items: 26

1.

Regulation of plasmid-encoded isoprene metabolism in Rhodococcus, a representative of an important link in the global isoprene cycle.

Crombie AT, Khawand ME, Rhodius VA, Fengler KA, Miller MC, Whited GM, McGenity TJ, Murrell JC.

Environ Microbiol. 2015 Sep;17(9):3314-29. doi: 10.1111/1462-2920.12793. Epub 2015 Apr 15.

2.

Design of orthogonal genetic switches based on a crosstalk map of σs, anti-σs, and promoters.

Rhodius VA, Segall-Shapiro TH, Sharon BD, Ghodasara A, Orlova E, Tabakh H, Burkhardt DH, Clancy K, Peterson TC, Gross CA, Voigt CA.

Mol Syst Biol. 2013 Oct 29;9:702. doi: 10.1038/msb.2013.58.

3.

Predicting the strength of UP-elements and full-length E. coli σE promoters.

Rhodius VA, Mutalik VK, Gross CA.

Nucleic Acids Res. 2012 Apr;40(7):2907-24. doi: 10.1093/nar/gkr1190. Epub 2011 Dec 8.

4.

Unexpected stress-reducing effect of PhaP, a poly(3-hydroxybutyrate) granule-associated protein, in Escherichia coli.

de Almeida A, Catone MV, Rhodius VA, Gross CA, Pettinari MJ.

Appl Environ Microbiol. 2011 Sep;77(18):6622-9. doi: 10.1128/AEM.05469-11. Epub 2011 Jul 22.

5.

Small RNAs endow a transcriptional activator with essential repressor functions for single-tier control of a global stress regulon.

Gogol EB, Rhodius VA, Papenfort K, Vogel J, Gross CA.

Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):12875-80. doi: 10.1073/pnas.1109379108. Epub 2011 Jul 18.

6.

Using DNA microarrays to assay part function.

Rhodius VA, Gross CA.

Methods Enzymol. 2011;497:75-113. doi: 10.1016/B978-0-12-385075-1.00004-4.

7.

Predicting strength and function for promoters of the Escherichia coli alternative sigma factor, sigmaE.

Rhodius VA, Mutalik VK.

Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):2854-9. doi: 10.1073/pnas.0915066107. Epub 2010 Feb 1.

8.

Reduced capacity of alternative sigmas to melt promoters ensures stringent promoter recognition.

Koo BM, Rhodius VA, Nonaka G, deHaseth PL, Gross CA.

Genes Dev. 2009 Oct 15;23(20):2426-36. doi: 10.1101/gad.1843709.

9.

Promoter strength properties of the complete sigma E regulon of Escherichia coli and Salmonella enterica.

Mutalik VK, Nonaka G, Ades SE, Rhodius VA, Gross CA.

J Bacteriol. 2009 Dec;191(23):7279-87. doi: 10.1128/JB.01047-09. Epub 2009 Sep 25.

10.

Dissection of recognition determinants of Escherichia coli sigma32 suggests a composite -10 region with an 'extended -10' motif and a core -10 element.

Koo BM, Rhodius VA, Campbell EA, Gross CA.

Mol Microbiol. 2009 May;72(4):815-29. doi: 10.1111/j.1365-2958.2009.06690.x. Epub 2009 Apr 14.

11.

Mutational analysis of Escherichia coli sigma28 and its target promoters reveals recognition of a composite -10 region, comprised of an 'extended -10' motif and a core -10 element.

Koo BM, Rhodius VA, Campbell EA, Gross CA.

Mol Microbiol. 2009 May;72(4):830-43. doi: 10.1111/j.1365-2958.2009.06691.x. Epub 2009 Apr 14.

12.

Technical considerations in using DNA microarrays to define regulons.

Rhodius VA, Wade JT.

Methods. 2009 Jan;47(1):63-72. doi: 10.1016/j.ymeth.2008.10.017. Epub 2008 Oct 26.

13.

Convergence of molecular, modeling, and systems approaches for an understanding of the Escherichia coli heat shock response.

Guisbert E, Yura T, Rhodius VA, Gross CA.

Microbiol Mol Biol Rev. 2008 Sep;72(3):545-54. doi: 10.1128/MMBR.00007-08. Review.

14.

SigmaE regulates and is regulated by a small RNA in Escherichia coli.

Thompson KM, Rhodius VA, Gottesman S.

J Bacteriol. 2007 Jun;189(11):4243-56. Epub 2007 Apr 6.

15.

Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli.

Guisbert E, Rhodius VA, Ahuja N, Witkin E, Gross CA.

J Bacteriol. 2007 Mar;189(5):1963-73. Epub 2006 Dec 8.

16.

Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stress.

Nonaka G, Blankschien M, Herman C, Gross CA, Rhodius VA.

Genes Dev. 2006 Jul 1;20(13):1776-89.

17.

Conserved and variable functions of the sigmaE stress response in related genomes.

Rhodius VA, Suh WC, Nonaka G, West J, Gross CA.

PLoS Biol. 2006 Jan;4(1):e2.

18.

Uses and pitfalls of microarrays for studying transcriptional regulation.

Rhodius VA, LaRossa RA.

Curr Opin Microbiol. 2003 Apr;6(2):114-9. Review.

PMID:
12732299
19.

Architectural requirements for optimal activation by tandem CRP molecules at a class I CRP-dependent promoter.

Tebbutt J, Rhodius VA, Webster CL, Busby SJ.

FEMS Microbiol Lett. 2002 Apr 23;210(1):55-60.

21.
22.

Positive activation of gene expression.

Rhodius VA, Busby SJ.

Curr Opin Microbiol. 1998 Apr;1(2):152-9. Review.

PMID:
10066477
24.

Transcription activation at class II CRP-dependent promoters: the role of different activating regions.

Rhodius VA, West DM, Webster CL, Busby SJ, Savery NJ.

Nucleic Acids Res. 1997 Jan 15;25(2):326-32.

25.

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