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Items: 16

1.

HLA*LA - HLA typing from linearly projected graph alignments.

Dilthey AT, Mentzer AJ, Carapito R, Cutland C, Cereb N, Madhi SA, Rhie A, Koren S, Bahram S, McVean G, Phillippy AM.

Bioinformatics. 2019 Apr 3. pii: btz235. doi: 10.1093/bioinformatics/btz235. [Epub ahead of print]

PMID:
30942877
2.

De novo assembly of haplotype-resolved genomes with trio binning.

Koren S, Rhie A, Walenz BP, Dilthey AT, Bickhart DM, Kingan SB, Hiendleder S, Williams JL, Smith TPL, Phillippy AM.

Nat Biotechnol. 2018 Oct 22. doi: 10.1038/nbt.4277. [Epub ahead of print]

3.

Nanopore sequencing and assembly of a human genome with ultra-long reads.

Jain M, Koren S, Miga KH, Quick J, Rand AC, Sasani TA, Tyson JR, Beggs AD, Dilthey AT, Fiddes IT, Malla S, Marriott H, Nieto T, O'Grady J, Olsen HE, Pedersen BS, Rhie A, Richardson H, Quinlan AR, Snutch TP, Tee L, Paten B, Phillippy AM, Simpson JT, Loman NJ, Loose M.

Nat Biotechnol. 2018 Apr;36(4):338-345. doi: 10.1038/nbt.4060. Epub 2018 Jan 29.

4.

De novo assembly and phasing of a Korean human genome.

Seo JS, Rhie A, Kim J, Lee S, Sohn MH, Kim CU, Hastie A, Cao H, Yun JY, Kim J, Kuk J, Park GH, Kim J, Ryu H, Kim J, Roh M, Baek J, Hunkapiller MW, Korlach J, Shin JY, Kim C.

Nature. 2016 Oct 13;538(7624):243-247. doi: 10.1038/nature20098. Epub 2016 Oct 5.

PMID:
27706134
5.

Genomic Copy Number Variations Characterize the Prognosis of Both P16-Positive and P16-Negative Oropharyngeal Squamous Cell Carcinoma After Curative Resection.

Rhie A, Park WS, Choi MK, Kim JH, Ryu J, Ryu CH, Kim JI, Jung YS.

Medicine (Baltimore). 2015 Dec;94(50):e2187. doi: 10.1097/MD.0000000000002187.

6.

The First Kazakh Whole Genomes: The First Report of NGS Data.

Akilzhanova A, Kairov U, Rakhimova S, Molkenov A, Rhie A, Kim JI, Seo JS, Zhumadilov Z.

Cent Asian J Glob Health. 2014 Dec 12;3(Suppl):146. doi: 10.5195/cajgh.2014.146. eCollection 2014.

7.

FX: an RNA-Seq analysis tool on the cloud.

Hong D, Rhie A, Park SS, Lee J, Ju YS, Kim S, Yu SB, Bleazard T, Park HS, Rhee H, Chong H, Yang KS, Lee YS, Kim IH, Lee JS, Kim JI, Seo JS.

Bioinformatics. 2012 Mar 1;28(5):721-3. doi: 10.1093/bioinformatics/bts023. Epub 2012 Jan 17.

PMID:
22257667
8.

The binding of the molecular chaperone Hsc70 to the prion protein PrP is modulated by pH and copper.

Wilkins S, Choglay AA, Chapple JP, van der Spuy J, Rhie A, Birkett CR, Cheetham ME.

Int J Biochem Cell Biol. 2010 Jul;42(7):1226-32. doi: 10.1016/j.biocel.2010.04.013. Epub 2010 Apr 29.

PMID:
20434583
9.

Functional interaction between Epstein-Barr virus replication protein Zta and host DNA damage response protein 53BP1.

Bailey SG, Verrall E, Schelcher C, Rhie A, Doherty AJ, Sinclair AJ.

J Virol. 2009 Nov;83(21):11116-22. doi: 10.1128/JVI.00512-09. Epub 2009 Aug 5.

10.

The direct interaction between 53BP1 and MDC1 is required for the recruitment of 53BP1 to sites of damage.

Eliezer Y, Argaman L, Rhie A, Doherty AJ, Goldberg M.

J Biol Chem. 2009 Jan 2;284(1):426-35. doi: 10.1074/jbc.M807375200. Epub 2008 Nov 5.

11.

The GAR motif of 53BP1 is arginine methylated by PRMT1 and is necessary for 53BP1 DNA binding activity.

Boisvert FM, Rhie A, Richard S, Doherty AJ.

Cell Cycle. 2005 Dec;4(12):1834-41. Epub 2005 Dec 14.

PMID:
16294045
12.

Raman optical activity demonstrates poly(L-proline) II helix in the N-terminal region of the ovine prion protein: implications for function and misfunction.

Blanch EW, Gill AC, Rhie AG, Hope J, Hecht L, Nielsen K, Barron LD.

J Mol Biol. 2004 Oct 15;343(2):467-76.

PMID:
15451674
13.

Structural determinants of conformationally selective, prion-binding aptamers.

Sayer NM, Cubin M, Rhie A, Bullock M, Tahiri-Alaoui A, James W.

J Biol Chem. 2004 Mar 26;279(13):13102-9. Epub 2004 Jan 7.

14.

A new perspective on beta-sheet structures using vibrational Raman optical activity: from poly(L-lysine) to the prion protein.

McColl IH, Blanch EW, Gill AC, Rhie AG, Ritchie MA, Hecht L, Nielsen K, Barron LD.

J Am Chem Soc. 2003 Aug 20;125(33):10019-26.

PMID:
12914465
15.

Characterization of 2'-fluoro-RNA aptamers that bind preferentially to disease-associated conformations of prion protein and inhibit conversion.

Rhie A, Kirby L, Sayer N, Wellesley R, Disterer P, Sylvester I, Gill A, Hope J, James W, Tahiri-Alaoui A.

J Biol Chem. 2003 Oct 10;278(41):39697-705. Epub 2003 Aug 5.

16.

Post-translational hydroxylation at the N-terminus of the prion protein reveals presence of PPII structure in vivo.

Gill AC, Ritchie MA, Hunt LG, Steane SE, Davies KG, Bocking SP, Rhie AG, Bennett AD, Hope J.

EMBO J. 2000 Oct 16;19(20):5324-31.

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