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Items: 34

1.

Plastid Genomes from Diverse Glaucophyte Genera Reveal a Largely Conserved Gene Content and Limited Architectural Diversity.

Figueroa-Martinez F, Jackson C, Reyes-Prieto A.

Genome Biol Evol. 2019 Jan 1;11(1):174-188. doi: 10.1093/gbe/evy268.

2.

The plastid genomes of nonphotosynthetic algae are not so small after all.

Figueroa-Martinez F, Nedelcu AM, Reyes-Prieto A, Smith DR.

Commun Integr Biol. 2017 Feb 1;10(1):e1283080. doi: 10.1080/19420889.2017.1283080. eCollection 2017.

3.

The Plastid Genome of Polytoma uvella Is the Largest Known among Colorless Algae and Plants and Reflects Contrasting Evolutionary Paths to Nonphotosynthetic Lifestyles.

Figueroa-Martinez F, Nedelcu AM, Smith DR, Reyes-Prieto A.

Plant Physiol. 2017 Feb;173(2):932-943. doi: 10.1104/pp.16.01628. Epub 2016 Dec 8.

4.

Massive and widespread organelle genomic expansion in the green algal genus Dunaliella.

Del Vasto M, Figueroa-Martinez F, Featherston J, González MA, Reyes-Prieto A, Durand PM, Smith DR.

Genome Biol Evol. 2015 Feb 6;7(3):656-63. doi: 10.1093/gbe/evv027.

5.
6.

Marine algae and land plants share conserved phytochrome signaling systems.

Duanmu D, Bachy C, Sudek S, Wong CH, Jiménez V, Rockwell NC, Martin SS, Ngan CY, Reistetter EN, van Baren MJ, Price DC, Wei CL, Reyes-Prieto A, Lagarias JC, Worden AZ.

Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):15827-32. doi: 10.1073/pnas.1416751111. Epub 2014 Sep 29.

7.

Alternatives to vitamin B1 uptake revealed with discovery of riboswitches in multiple marine eukaryotic lineages.

McRose D, Guo J, Monier A, Sudek S, Wilken S, Yan S, Mock T, Archibald JM, Begley TP, Reyes-Prieto A, Worden AZ.

ISME J. 2014 Dec;8(12):2517-29. doi: 10.1038/ismej.2014.146. Epub 2014 Aug 29.

8.

Nucleotide substitution analyses of the glaucophyte Cyanophora suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida.

Smith DR, Jackson CJ, Reyes-Prieto A.

Mol Phylogenet Evol. 2014 Oct;79:380-4. doi: 10.1016/j.ympev.2014.07.001. Epub 2014 Jul 11.

PMID:
25017510
9.

Origin and evolution of the sodium -pumping NADH: ubiquinone oxidoreductase.

Reyes-Prieto A, Barquera B, Juárez O.

PLoS One. 2014 May 8;9(5):e96696. doi: 10.1371/journal.pone.0096696. eCollection 2014.

10.

Molecular markers from different genomic compartments reveal cryptic diversity within glaucophyte species.

Chong J, Jackson C, Kim JI, Yoon HS, Reyes-Prieto A.

Mol Phylogenet Evol. 2014 Jul;76:181-8. doi: 10.1016/j.ympev.2014.03.019. Epub 2014 Mar 28.

PMID:
24680917
11.

Zn-bis-glutathionate is the best co-substrate of the monomeric phytochelatin synthase from the photosynthetic heavy metal-hyperaccumulator Euglena gracilis.

García-García JD, Girard L, Hernández G, Saavedra E, Pardo JP, Rodríguez-Zavala JS, Encalada R, Reyes-Prieto A, Mendoza-Cózatl DG, Moreno-Sánchez R.

Metallomics. 2014 Mar;6(3):604-16. doi: 10.1039/c3mt00313b. Epub 2014 Jan 24.

PMID:
24464102
12.

Plastid-localized amino acid biosynthetic pathways of Plantae are predominantly composed of non-cyanobacterial enzymes.

Reyes-Prieto A, Moustafa A.

Sci Rep. 2012;2:955. doi: 10.1038/srep00955. Epub 2012 Dec 11.

13.

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.

Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, Hopkins JF, Kuo A, Rensing SA, Schmutz J, Symeonidi A, Elias M, Eveleigh RJ, Herman EK, Klute MJ, Nakayama T, Oborník M, Reyes-Prieto A, Armbrust EV, Aves SJ, Beiko RG, Coutinho P, Dacks JB, Durnford DG, Fast NM, Green BR, Grisdale CJ, Hempel F, Henrissat B, Höppner MP, Ishida K, Kim E, Kořený L, Kroth PG, Liu Y, Malik SB, Maier UG, McRose D, Mock T, Neilson JA, Onodera NT, Poole AM, Pritham EJ, Richards TA, Rocap G, Roy SW, Sarai C, Schaack S, Shirato S, Slamovits CH, Spencer DF, Suzuki S, Worden AZ, Zauner S, Barry K, Bell C, Bharti AK, Crow JA, Grimwood J, Kramer R, Lindquist E, Lucas S, Salamov A, McFadden GI, Lane CE, Keeling PJ, Gray MW, Grigoriev IV, Archibald JM.

Nature. 2012 Dec 6;492(7427):59-65. doi: 10.1038/nature11681. Epub 2012 Nov 28.

PMID:
23201678
14.

Endosymbiotic and horizontal gene transfer in microbial eukaryotes: Impacts on cell evolution and the tree of life.

Chan CX, Bhattacharya D, Reyes-Prieto A.

Mob Genet Elements. 2012 Mar 1;2(2):101-105.

15.

Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants.

Price DC, Chan CX, Yoon HS, Yang EC, Qiu H, Weber AP, Schwacke R, Gross J, Blouin NA, Lane C, Reyes-Prieto A, Durnford DG, Neilson JA, Lang BF, Burger G, Steiner JM, Löffelhardt W, Meuser JE, Posewitz MC, Ball S, Arias MC, Henrissat B, Coutinho PM, Rensing SA, Symeonidi A, Doddapaneni H, Green BR, Rajah VD, Boore J, Bhattacharya D.

Science. 2012 Feb 17;335(6070):843-7. doi: 10.1126/science.1213561. Erratum in: Science. 2012 Mar 16;335(6074):1302.

16.

Red and green algal origin of diatom membrane transporters: insights into environmental adaptation and cell evolution.

Chan CX, Reyes-Prieto A, Bhattacharya D.

PLoS One. 2011;6(12):e29138. doi: 10.1371/journal.pone.0029138. Epub 2011 Dec 14.

17.

Differential gene retention in plastids of common recent origin.

Reyes-Prieto A, Yoon HS, Moustafa A, Yang EC, Andersen RA, Boo SM, Nakayama T, Ishida K, Bhattacharya D.

Mol Biol Evol. 2010 Jul;27(7):1530-7. doi: 10.1093/molbev/msq032. Epub 2010 Feb 1.

18.

A single origin of the photosynthetic organelle in different Paulinella lineages.

Yoon HS, Nakayama T, Reyes-Prieto A, Andersen RA, Boo SM, Ishida K, Bhattacharya D.

BMC Evol Biol. 2009 May 13;9:98. doi: 10.1186/1471-2148-9-98.

19.

Interrelationships of chromalveolates within a broadly sampled tree of photosynthetic protists.

Reeb VC, Peglar MT, Yoon HS, Bai JR, Wu M, Shiu P, Grafenberg JL, Reyes-Prieto A, Rümmele SE, Gross J, Bhattacharya D.

Mol Phylogenet Evol. 2009 Oct;53(1):202-11. doi: 10.1016/j.ympev.2009.04.012. Epub 2009 May 4.

PMID:
19398025
20.

Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic.

Reyes-Prieto A, Moustafa A, Bhattacharya D.

Curr Biol. 2008 Jul 8;18(13):956-62. doi: 10.1016/j.cub.2008.05.042.

21.

Chlamydiae has contributed at least 55 genes to Plantae with predominantly plastid functions.

Moustafa A, Reyes-Prieto A, Bhattacharya D.

PLoS One. 2008 May 21;3(5):e2205. doi: 10.1371/journal.pone.0002205.

22.

The polypeptides COX2A and COX2B are essential components of the mitochondrial cytochrome c oxidase of Toxoplasma gondii.

Morales-Sainz L, Escobar-Ramírez A, Cruz-Torres V, Reyes-Prieto A, Vázquez-Acevedo M, Lara-Martínez R, Jiménez-García LF, González-Halphen D.

Biochim Biophys Acta. 2008 Feb;1777(2):202-10. Epub 2007 Nov 5.

23.

How do endosymbionts become organelles? Understanding early events in plastid evolution.

Bhattacharya D, Archibald JM, Weber AP, Reyes-Prieto A.

Bioessays. 2007 Dec;29(12):1239-46.

PMID:
18027391
24.

Phylogeny of nuclear-encoded plastid-targeted proteins supports an early divergence of glaucophytes within Plantae.

Reyes-Prieto A, Bhattacharya D.

Mol Biol Evol. 2007 Nov;24(11):2358-61. Epub 2007 Sep 6.

PMID:
17827169
25.

The origin and establishment of the plastid in algae and plants.

Reyes-Prieto A, Weber AP, Bhattacharya D.

Annu Rev Genet. 2007;41:147-68. Review.

PMID:
17600460
26.

Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates.

Hackett JD, Yoon HS, Li S, Reyes-Prieto A, Rümmele SE, Bhattacharya D.

Mol Biol Evol. 2007 Aug;24(8):1702-13. Epub 2007 May 7.

PMID:
17488740
27.

Phylogeny of Calvin cycle enzymes supports Plantae monophyly.

Reyes-Prieto A, Bhattacharya D.

Mol Phylogenet Evol. 2007 Oct;45(1):384-91. Epub 2007 Mar 4. No abstract available.

PMID:
17482838
28.

Cyanobacterial contribution to algal nuclear genomes is primarily limited to plastid functions.

Reyes-Prieto A, Hackett JD, Soares MB, Bonaldo MF, Bhattacharya D.

Curr Biol. 2006 Dec 5;16(23):2320-5.

29.

Minimal plastid genome evolution in the Paulinella endosymbiont.

Yoon HS, Reyes-Prieto A, Melkonian M, Bhattacharya D.

Curr Biol. 2006 Sep 5;16(17):R670-2. No abstract available.

30.

The mitochondrial oxidative phosphorylation proteome of Chlamydomonas reinhardtii deduced from the Genome Sequencing Project.

Cardol P, González-Halphen D, Reyes-Prieto A, Baurain D, Matagne RF, Remacle C.

Plant Physiol. 2005 Feb;137(2):447-59. Review. No abstract available.

31.

Genetic correction of mitochondrial diseases: using the natural migration of mitochondrial genes to the nucleus in chlorophyte algae as a model system.

González-Halphen D, Funes S, Pérez-Martínez X, Reyes-Prieto A, Claros MG, Davidson E, King MP.

Ann N Y Acad Sci. 2004 Jun;1019:232-9. Review.

PMID:
15247021
32.

On the evolutionary origins of apicoplasts: revisiting the rhodophyte vs. chlorophyte controversy.

Funes S, Reyes-Prieto A, Pérez-Martínez X, González-Halphen D.

Microbes Infect. 2004 Mar;6(3):305-11. Review.

PMID:
15065552
33.

A green algal apicoplast ancestor.

Funes S, Davidson E, Reyes-Prieto A, Magallón S, Herion P, King MP, González-Halphen D.

Science. 2002 Dec 13;298(5601):2155. No abstract available.

34.

Characterization of oxidative phosphorylation in the colorless chlorophyte Polytomella sp. Its mitochondrial respiratory chain lacks a plant-like alternative oxidase.

Reyes-Prieto A, El-Hafidi M, Moreno-Sánchez R, González-Halphen D.

Biochim Biophys Acta. 2002 Jul 1;1554(3):170-9.

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