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Items: 17

1.

Rapid dynamics of general transcription factor TFIIB binding during preinitiation complex assembly revealed by single-molecule analysis.

Zhang Z, English BP, Grimm JB, Kazane SA, Hu W, Tsai A, Inouye C, You C, Piehler J, Schultz PG, Lavis LD, Revyakin A, Tjian R.

Genes Dev. 2016 Sep 15;30(18):2106-2118.

2.

A general method to improve fluorophores for live-cell and single-molecule microscopy.

Grimm JB, English BP, Chen J, Slaughter JP, Zhang Z, Revyakin A, Patel R, Macklin JJ, Normanno D, Singer RH, Lionnet T, Lavis LD.

Nat Methods. 2015 Mar;12(3):244-50, 3 p following 250. doi: 10.1038/nmeth.3256. Epub 2015 Jan 19.

3.

[ZINK IS ACTIVATOR OF ENTERAL CALCIUM METABOLISM].

Polyakova EP, Ksenofontov DA, Revyakin AO, Ivanov AA.

Eksp Klin Gastroenterol. 2015;(8):79-84. Russian.

PMID:
27017748
4.

Whole-cell, multicolor superresolution imaging using volumetric multifocus microscopy.

Hajj B, Wisniewski J, El Beheiry M, Chen J, Revyakin A, Wu C, Dahan M.

Proc Natl Acad Sci U S A. 2014 Dec 9;111(49):17480-5. doi: 10.1073/pnas.1412396111. Epub 2014 Nov 24.

5.

Single-molecule dynamics of enhanceosome assembly in embryonic stem cells.

Chen J, Zhang Z, Li L, Chen BC, Revyakin A, Hajj B, Legant W, Dahan M, Lionnet T, Betzig E, Tjian R, Liu Z.

Cell. 2014 Mar 13;156(6):1274-1285. doi: 10.1016/j.cell.2014.01.062.

6.

Single-molecule tracking of the transcription cycle by sub-second RNA detection.

Zhang Z, Revyakin A, Grimm JB, Lavis LD, Tjian R.

Elife. 2014;3:e01775. doi: 10.7554/eLife.01775. Epub 2014 Jan 28.

7.

Transcription initiation by human RNA polymerase II visualized at single-molecule resolution.

Revyakin A, Zhang Z, Coleman RA, Li Y, Inouye C, Lucas JK, Park SR, Chu S, Tjian R.

Genes Dev. 2012 Aug 1;26(15):1691-702. doi: 10.1101/gad.194936.112. Epub 2012 Jul 18.

8.

Magnetic trap construction.

Lionnet T, Allemand JF, Revyakin A, Strick TR, Saleh OA, Bensimon D, Croquette V.

Cold Spring Harb Protoc. 2012 Jan 1;2012(1):133-8. doi: 10.1101/pdb.prot067496.

PMID:
22194260
9.

Single-molecule studies using magnetic traps.

Lionnet T, Allemand JF, Revyakin A, Strick TR, Saleh OA, Bensimon D, Croquette V.

Cold Spring Harb Protoc. 2012 Jan 1;2012(1):34-49. doi: 10.1101/pdb.top067488. Review.

PMID:
22194259
10.

Static and kinetic site-specific protein-DNA photocrosslinking: analysis of bacterial transcription initiation complexes.

Naryshkin N, Druzhinin S, Revyakin A, Kim Y, Mekler V, Ebright RH.

Methods Mol Biol. 2009;543:403-37. doi: 10.1007/978-1-60327-015-1_25.

11.

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching.

Revyakin A, Liu C, Ebright RH, Strick TR.

Science. 2006 Nov 17;314(5802):1139-43.

12.

Site-specific protein-DNA photo-cross-linking: analysis of structural organization of protein-DNA and multiprotein-DNA complexes.

Naryshkin N, Revyakin A, Ebright RH.

CSH Protoc. 2006 Nov 1;2006(6). pii: pdb.prot4588. doi: 10.1101/pdb.prot4588.

PMID:
22485981
13.

Single-molecule DNA nanomanipulation: improved resolution through use of shorter DNA fragments.

Revyakin A, Ebright RH, Strick TR.

Nat Methods. 2005 Feb;2(2):127-38. No abstract available.

PMID:
16156080
14.

Promoter unwinding and promoter clearance by RNA polymerase: detection by single-molecule DNA nanomanipulation.

Revyakin A, Ebright RH, Strick TR.

Proc Natl Acad Sci U S A. 2004 Apr 6;101(14):4776-80. Epub 2004 Mar 22.

15.

Single-molecule DNA nanomanipulation: detection of promoter-unwinding events by RNA polymerase.

Revyakin A, Allemand JF, Croquette V, Ebright RH, Strick TR.

Methods Enzymol. 2003;370:577-98. No abstract available.

PMID:
14712677
16.

Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex.

Mekler V, Kortkhonjia E, Mukhopadhyay J, Knight J, Revyakin A, Kapanidis AN, Niu W, Ebright YW, Levy R, Ebright RH.

Cell. 2002 Mar 8;108(5):599-614.

17.

Structural organization of the RNA polymerase-promoter open complex.

Naryshkin N, Revyakin A, Kim Y, Mekler V, Ebright RH.

Cell. 2000 Jun 9;101(6):601-11.

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