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Items: 1 to 50 of 74

1.

Phylogenomic and epidemiological insights into two clinical Mycobacterium bovis BCG strains circulating in South Africa.

Modipane L, Reva O, Magazi BT, Antiabong JF, Osei Sekyere J, Mbelle NM.

Int J Infect Dis. 2019 Aug 20;87:32-38. doi: 10.1016/j.ijid.2019.08.010. [Epub ahead of print]

2.

Assembly of Complete Genome Sequences of Negative-Control and Experimental Strain Variants of Staphylococcus aureus ATCC BAA-39 Selected under the Effect of the Drug FS-1, Which Induces Antibiotic Resistance Reversion.

Joubert M, Reva ON, Korotetskiy IS, Shvidko SV, Shilov SV, Jumagaziyeva AB, Kenesheva ST, Suldina NA, Ilin AI.

Microbiol Resour Announc. 2019 Jul 25;8(30). pii: e00579-19. doi: 10.1128/MRA.00579-19.

3.

Comparison of structures and cytotoxicity of mupirocin and batumin against melanoma and several other cancer cell lines.

Reva ON, Rademan S, Visagie MH, Lebelo MT, Gwangwa MV, Klochko VV, Joubert AM, Lall N.

Future Med Chem. 2019 Apr;11(7):677-691. doi: 10.4155/fmc-2018-0333. Epub 2019 Apr 5.

PMID:
30947530
4.

Limits of Life and the Habitability of Mars: The ESA Space Experiment BIOMEX on the ISS.

de Vera JP, Alawi M, Backhaus T, Baqué M, Billi D, Böttger U, Berger T, Bohmeier M, Cockell C, Demets R, de la Torre Noetzel R, Edwards H, Elsaesser A, Fagliarone C, Fiedler A, Foing B, Foucher F, Fritz J, Hanke F, Herzog T, Horneck G, Hübers HW, Huwe B, Joshi J, Kozyrovska N, Kruchten M, Lasch P, Lee N, Leuko S, Leya T, Lorek A, Martínez-Frías J, Meessen J, Moritz S, Moeller R, Olsson-Francis K, Onofri S, Ott S, Pacelli C, Podolich O, Rabbow E, Reitz G, Rettberg P, Reva O, Rothschild L, Sancho LG, Schulze-Makuch D, Selbmann L, Serrano P, Szewzyk U, Verseux C, Wadsworth J, Wagner D, Westall F, Wolter D, Zucconi L.

Astrobiology. 2019 Feb;19(2):145-157. doi: 10.1089/ast.2018.1897.

5.

Multimicrobial Kombucha Culture Tolerates Mars-Like Conditions Simulated on Low-Earth Orbit.

Podolich O, Kukharenko O, Haidak A, Zaets I, Zaika L, Storozhuk O, Palchikovska L, Orlovska I, Reva O, Borisova T, Khirunenko L, Sosnin M, Rabbow E, Kravchenko V, Skoryk M, Kremenskoy M, Demets R, Olsson-Francis K, Kozyrovska N, de Vera JP.

Astrobiology. 2019 Feb;19(2):183-196. doi: 10.1089/ast.2017.1746. Epub 2018 Nov 28.

PMID:
30484685
6.

Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.

Rotimi AM, Pierneef R, Reva ON.

BMC Bioinformatics. 2018 Aug 30;19(1):309. doi: 10.1186/s12859-018-2320-1.

7.

Promising anticancer activity of batumin: a natural polyene antibiotic produced by Pseudomonas batumici.

Soldatkina MA, Klochko VV, Zagorodnya SD, Rademan S, Visagie MH, Lebelo MT, Gwangwa MV, Joubert AM, Lall N, Reva ON.

Future Med Chem. 2018 Sep 1;10(18):2187-2199. doi: 10.4155/fmc-2018-0062. Epub 2018 Aug 7.

PMID:
30081676
8.

EuGI: a novel resource for studying genomic islands to facilitate horizontal gene transfer detection in eukaryotes.

Clasen FJ, Pierneef RE, Slippers B, Reva O.

BMC Genomics. 2018 May 3;19(1):323. doi: 10.1186/s12864-018-4724-8.

9.

SWPhylo - A Novel Tool for Phylogenomic Inferences by Comparison of Oligonucleotide Patterns and Integration of Genome-Based and Gene-Based Phylogenetic Trees.

Yu X, Reva ON.

Evol Bioinform Online. 2018 Feb 20;14:1176934318759299. doi: 10.1177/1176934318759299. eCollection 2018.

10.

Assembling metagenomes, one community at a time.

van der Walt AJ, van Goethem MW, Ramond JB, Makhalanyane TP, Reva O, Cowan DA.

BMC Genomics. 2017 Jul 10;18(1):521. doi: 10.1186/s12864-017-3918-9.

11.

Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT.

Golyshina OV, Tran H, Reva ON, Lemak S, Yakunin AF, Goesmann A, Nechitaylo TY, LaCono V, Smedile F, Slesarev A, Rojo D, Barbas C, Ferrer M, Yakimov MM, Golyshin PN.

Sci Rep. 2017 Jun 16;7(1):3682. doi: 10.1038/s41598-017-03904-5.

12.

Genomic Insight into Mechanisms of Reversion of Antibiotic Resistance in Multidrug Resistant Mycobacterium tuberculosis Induced by a Nanomolecular Iodine-Containing Complex FS-1.

Ilin AI, Kulmanov ME, Korotetskiy IS, Islamov RA, Akhmetova GK, Lankina MV, Reva ON.

Front Cell Infect Microbiol. 2017 May 8;7:151. doi: 10.3389/fcimb.2017.00151. eCollection 2017.

13.

Kombucha Multimicrobial Community under Simulated Spaceflight and Martian Conditions.

Podolich O, Zaets I, Kukharenko O, Orlovska I, Reva O, Khirunenko L, Sosnin M, Haidak A, Shpylova S, Rabbow E, Skoryk M, Kremenskoy M, Demets R, Kozyrovska N, de Vera JP.

Astrobiology. 2017 May;17(5):459-469. doi: 10.1089/ast.2016.1480.

PMID:
28520475
14.

Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota.

Kublanov IV, Sigalova OM, Gavrilov SN, Lebedinsky AV, Rinke C, Kovaleva O, Chernyh NA, Ivanova N, Daum C, Reddy TB, Klenk HP, Spring S, Göker M, Reva ON, Miroshnichenko ML, Kyrpides NC, Woyke T, Gelfand MS, Bonch-Osmolovskaya EA.

Front Microbiol. 2017 Feb 20;8:195. doi: 10.3389/fmicb.2017.00195. eCollection 2017.

15.

Whole Genome Comparison of Thermus sp. NMX2.A1 Reveals Principle Carbon Metabolism Differences with Closest Relation Thermus scotoductus SA-01.

Müller WJ, Tlalajoe N, Cason ED, Litthauer D, Reva O, Brzuszkiewicz E, van Heerden E.

G3 (Bethesda). 2016 Sep 8;6(9):2791-7. doi: 10.1534/g3.116.032953.

16.

Gene expression regulation in the plant growth promoting Bacillus atrophaeus UCMB-5137 stimulated by maize root exudates.

Mwita L, Chan WY, Pretorius T, Lyantagaye SL, Lapa SV, Avdeeva LV, Reva ON.

Gene. 2016 Sep 15;590(1):18-28. doi: 10.1016/j.gene.2016.05.045. Epub 2016 Jun 1.

PMID:
27259668
17.

The First Space-Related Study of a Kombucha Multimicrobial Cellulose-Forming Community: Preparatory Laboratory Experiments.

Podolich O, Zaets I, Kukharenko O, Orlovska I, Reva O, Khirunenko L, Sosnin M, Haidak A, Shpylova S, Rohutskyy I, Kharina A, Skoryk М, Kremenskoy M, Klymchuk D, Demets R, de Vera JP, Kozyrovska N.

Orig Life Evol Biosph. 2017 Jun;47(2):169-185. doi: 10.1007/s11084-016-9483-4. Epub 2016 Mar 30.

PMID:
27025932
18.

Prospects of a new antistaphylococcal drug batumin revealed by molecular docking and analysis of the complete genome sequence of the batumin-producer Pseudomonas batumici UCM B-321.

Klochko VV, Zelena LB, Kim JY, Avdeeva LV, Reva ON.

Int J Antimicrob Agents. 2016 Jan;47(1):56-61. doi: 10.1016/j.ijantimicag.2015.10.006. Epub 2015 Oct 30.

PMID:
26607338
19.

Complete Genome Sequence of Multidrug-Resistant Clinical Isolate Mycobacterium tuberculosis 187.0, Used To Study the Effect of Drug Susceptibility Reversion by the New Medicinal Drug FS-1.

Ilin AI, Kulmanov ME, Korotetskiy IS, Akhmetova GK, Lankina MV, Shvidko SV, Reva ON.

Genome Announc. 2015 Nov 5;3(6). pii: e01272-15. doi: 10.1128/genomeA.01272-15.

20.

[Detection of potential sites of recombination in the Tick-borne encephalitis virus by the methods of comparative genomics].

Dzhioev YP, Paramonov A, Reva ON, Bukin YS, Kozlova IV, Demina TV, Tkachev SE, Zlobin VI.

Vopr Virusol. 2015;60(3):44-9. Russian.

PMID:
26281307
21.

Pre_GI: a global map of ontological links between horizontally transferred genomic islands in bacterial and archaeal genomes.

Pierneef R, Cronje L, Bezuidt O, Reva ON.

Database (Oxford). 2015 Jun 17;2015:bav058. doi: 10.1093/database/bav058.

22.

Metabarcoding of the kombucha microbial community grown in different microenvironments.

Reva ON, Zaets IE, Ovcharenko LP, Kukharenko OE, Shpylova SP, Podolich OV, de Vera JP, Kozyrovska NO.

AMB Express. 2015 Dec;5(1):124. doi: 10.1186/s13568-015-0124-5. Epub 2015 Jun 11.

23.

[The taxonomic study of the strain Bacillus sp. UCM B-7404--phytopathogenic fungae antagonist].

Zhukova DA, Klochko VV, Zelena LB, Reva OM, Dragovoz IV, Avdeeva LV.

Mikrobiol Z. 2015 Mar-Apr;77(2):9-14. Ukrainian.

PMID:
26036027
24.

Role of the horizontal gene exchange in evolution of pathogenic Mycobacteria.

Reva O, Korotetskiy I, Ilin A.

BMC Evol Biol. 2015;15 Suppl 1:S2. doi: 10.1186/1471-2148-15-S1-S2. Epub 2015 Feb 2.

25.

Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics.

Alcaide M, Tchigvintsev A, Martínez-Martínez M, Popovic A, Reva ON, Lafraya Á, Bargiela R, Nechitaylo TY, Matesanz R, Cambon-Bonavita MA, Jebbar M, Yakimov MM, Savchenko A, Golyshina OV, Yakunin AF, Golyshin PN, Ferrer M; MAMBA Consortium.

Appl Environ Microbiol. 2015 Mar;81(6):2125-36. doi: 10.1128/AEM.03387-14. Epub 2015 Jan 16.

26.

Temperate bacteriophages collected by outer membrane vesicles in Komagataeibacter intermedius.

Kharina A, Podolich O, Faidiuk I, Zaika S, Haidak A, Kukharenko O, Zaets I, Tovkach F, Reva O, Kremenskoy M, Kozyrovska N.

J Basic Microbiol. 2015 Apr;55(4):509-13. doi: 10.1002/jobm.201400711. Epub 2015 Jan 15.

PMID:
25589010
27.

Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats.

Alcaide M, Stogios PJ, Lafraya Á, Tchigvintsev A, Flick R, Bargiela R, Chernikova TN, Reva ON, Hai T, Leggewie CC, Katzke N, La Cono V, Matesanz R, Jebbar M, Jaeger KE, Yakimov MM, Yakunin AF, Golyshin PN, Golyshina OV, Savchenko A, Ferrer M; MAMBA Consortium.

Environ Microbiol. 2015 Feb;17(2):332-45. doi: 10.1111/1462-2920.12660. Epub 2014 Dec 17.

PMID:
25330254
28.
29.

The Rhizobacterium Bacillus amyloliquefaciens subsp. plantarum NAU-B3 Contains a Large Inversion within the Central Portion of the Genome.

Wu H, Qiao J, Blom J, Rueckert C, Reva O, Gao X, Borriss R.

Genome Announc. 2013 Nov 14;1(6). pii: e00941-13. doi: 10.1128/genomeA.00941-13.

30.

Analysis of protein thermostability enhancing factors in industrially important thermus bacteria species.

Kumwenda B, Litthauer D, Bishop OT, Reva O.

Evol Bioinform Online. 2013 Aug 18;9:327-42. doi: 10.4137/EBO.S12539. eCollection 2013.

31.

Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica.

Kube M, Chernikova TN, Al-Ramahi Y, Beloqui A, Lopez-Cortez N, Guazzaroni ME, Heipieper HJ, Klages S, Kotsyurbenko OR, Langer I, Nechitaylo TY, Lünsdorf H, Fernández M, Juárez S, Ciordia S, Singer A, Kagan O, Egorova O, Petit PA, Stogios P, Kim Y, Tchigvintsev A, Flick R, Denaro R, Genovese M, Albar JP, Reva ON, Martínez-Gomariz M, Tran H, Ferrer M, Savchenko A, Yakunin AF, Yakimov MM, Golyshina OV, Reinhardt R, Golyshin PN.

Nat Commun. 2013;4:2156. doi: 10.1038/ncomms3156.

32.

Draft Genome Sequence of Bacillus atrophaeus UCMB-5137, a Plant Growth-Promoting Rhizobacterium.

Chan WY, Dietel K, Lapa SV, Avdeeva LV, Borriss R, Reva ON.

Genome Announc. 2013 Jun 20;1(3). pii: e00233-13. doi: 10.1128/genomeA.00233-13.

33.

Biochemical diversity of carboxyl esterases and lipases from Lake Arreo (Spain): a metagenomic approach.

Martínez-Martínez M, Alcaide M, Tchigvintsev A, Reva O, Polaina J, Bargiela R, Guazzaroni ME, Chicote A, Canet A, Valero F, Rico Eguizabal E, Guerrero Mdel C, Yakunin AF, Ferrer M.

Appl Environ Microbiol. 2013 Jun;79(12):3553-62. doi: 10.1128/AEM.00240-13. Epub 2013 Mar 29.

34.

[Geno- and phenotypic characteristic of Bacillus strains--components of endosporin].

Safronova LA, Zelenaia LB, Klochko VV, Avdeeva LV, Reva ON, Podgorskiĭ VS.

Mikrobiol Z. 2012 Sep-Oct;74(5):55-65. Russian.

PMID:
23120987
35.
36.

Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen.

Ferrer M, Ghazi A, Beloqui A, Vieites JM, López-Cortés N, Marín-Navarro J, Nechitaylo TY, Guazzaroni ME, Polaina J, Waliczek A, Chernikova TN, Reva ON, Golyshina OV, Golyshin PN.

PLoS One. 2012;7(6):e38134. doi: 10.1371/journal.pone.0038134. Epub 2012 Jun 25.

37.

Does the applicability of Bacillus strains in probiotics rely upon their taxonomy?

Safronova LA, Zelena LB, Klochko VV, Reva ON.

Can J Microbiol. 2012 Feb;58(2):212-9. doi: 10.1139/w11-113. Epub 2012 Jan 19.

PMID:
22257263
38.

Sequence of the hyperplastic genome of the naturally competent Thermus scotoductus SA-01.

Gounder K, Brzuszkiewicz E, Liesegang H, Wollherr A, Daniel R, Gottschalk G, Reva O, Kumwenda B, Srivastava M, Bricio C, Berenguer J, van Heerden E, Litthauer D.

BMC Genomics. 2011 Nov 24;12:577. doi: 10.1186/1471-2164-12-577.

39.

Mainstreams of horizontal gene exchange in enterobacteria: consideration of the outbreak of enterohemorrhagic E. coli O104:H4 in Germany in 2011.

Bezuidt O, Pierneef R, Mncube K, Lima-Mendez G, Reva ON.

PLoS One. 2011;6(10):e25702. doi: 10.1371/journal.pone.0025702. Epub 2011 Oct 14.

40.

Comparative structural bioinformatics analysis of Bacillus amyloliquefaciens chemotaxis proteins within Bacillus subtilis group.

Yssel A, Reva O, Tastan Bishop O.

Appl Microbiol Biotechnol. 2011 Dec;92(5):997-1008. doi: 10.1007/s00253-011-3582-y. Epub 2011 Oct 13.

PMID:
21993479
41.

Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42.

Rückert C, Blom J, Chen X, Reva O, Borriss R.

J Biotechnol. 2011 Aug 20;155(1):78-85. doi: 10.1016/j.jbiotec.2011.01.006. Epub 2011 Jan 22.

PMID:
21262282
42.

Diversity of glycosyl hydrolases from cellulose-depleting communities enriched from casts of two earthworm species.

Beloqui A, Nechitaylo TY, López-Cortés N, Ghazi A, Guazzaroni ME, Polaina J, Strittmatter AW, Reva O, Waliczek A, Yakimov MM, Golyshina OV, Ferrer M, Golyshin PN.

Appl Environ Microbiol. 2010 Sep;76(17):5934-46. doi: 10.1128/AEM.00902-10. Epub 2010 Jul 9.

43.

Visualization of Pseudomonas genomic structure by abundant 8-14mer oligonucleotides.

Davenport CF, Wiehlmann L, Reva ON, Tümmler B.

Environ Microbiol. 2009 May;11(5):1092-104. doi: 10.1111/j.1462-2920.2008.01839.x. Epub 2009 Jan 21.

PMID:
19161433
44.

The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage.

Ganesan H, Rakitianskaia AS, Davenport CF, Tümmler B, Reva ON.

BMC Bioinformatics. 2008 Aug 7;9:333. doi: 10.1186/1471-2105-9-333.

45.

Think big--giant genes in bacteria.

Reva O, Tümmler B.

Environ Microbiol. 2008 Mar;10(3):768-77. doi: 10.1111/j.1462-2920.2007.01500.x.

PMID:
18237309
46.

Global features of the Alcanivorax borkumensis SK2 genome.

Reva ON, Hallin PF, Willenbrock H, Sicheritz-Ponten T, Tümmler B, Ussery DW.

Environ Microbiol. 2008 Mar;10(3):614-25. Epub 2007 Dec 12.

PMID:
18081853
47.

Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42.

Chen XH, Koumoutsi A, Scholz R, Eisenreich A, Schneider K, Heinemeyer I, Morgenstern B, Voss B, Hess WR, Reva O, Junge H, Voigt B, Jungblut PR, Vater J, Süssmuth R, Liesegang H, Strittmatter A, Gottschalk G, Borriss R.

Nat Biotechnol. 2007 Sep;25(9):1007-14. Epub 2007 Aug 19.

PMID:
17704766
48.

Diversity of the abundant pKLC102/PAGI-2 family of genomic islands in Pseudomonas aeruginosa.

Klockgether J, Würdemann D, Reva O, Wiehlmann L, Tümmler B.

J Bacteriol. 2007 Mar;189(6):2443-59. Epub 2006 Dec 28.

49.

Protection of oilseed rape (Brassica napus) toward fungal pathogens by strains of plant-associated Bacillus amyloliquefaciens.

Danielsson J, Reva O, Meijer J.

Microb Ecol. 2007 Jul;54(1):134-40. Epub 2006 Dec 22.

PMID:
17186140
50.

Functional genomics of stress response in Pseudomonas putida KT2440.

Reva ON, Weinel C, Weinel M, Böhm K, Stjepandic D, Hoheisel JD, Tümmler B.

J Bacteriol. 2006 Jun;188(11):4079-92.

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