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Items: 1 to 50 of 54

1.

Correction to: The transcriptome landscape of early maize meiosis.

Dukowic-Schulze S, Sundararajan A, Mudge J, Ramaraj T, Farmer AD, Wang M, Sun Q, Pillardy J, Kianian S, Retzel EF, Pawlowski WP, Chen C.

BMC Plant Biol. 2018 Jan 15;18(1):12. doi: 10.1186/s12870-017-1224-y.

2.

The plant-specific protein FEHLSTART controls male meiotic entry, initializing meiotic synchronization in Arabidopsis.

Li J, Dukowic-Schulze S, Lindquist IE, Farmer AD, Kelly B, Li T, Smith AG, Retzel EF, Mudge J, Chen C.

Plant J. 2015 Nov;84(4):659-71. doi: 10.1111/tpj.13026. Epub 2015 Oct 22.

3.

The transcriptome landscape of early maize meiosis.

Dukowic-Schulze S, Sundararajan A, Mudge J, Ramaraj T, Farmer AD, Wang M, Sun Q, Pillardy J, Kianian S, Retzel EF, Pawlowski WP, Chen C.

BMC Plant Biol. 2014 May 3;14:118. doi: 10.1186/1471-2229-14-118. Erratum in: BMC Plant Biol. 2018 Jan 15;18(1):12.

4.

Comparative transcriptomics of early meiosis in Arabidopsis and maize.

Dukowic-Schulze S, Harris A, Li J, Sundararajan A, Mudge J, Retzel EF, Pawlowski WP, Chen C.

J Genet Genomics. 2014 Mar 20;41(3):139-52. doi: 10.1016/j.jgg.2013.11.007. Epub 2013 Dec 14.

5.

Male-specific region of the bovine Y chromosome is gene rich with a high transcriptomic activity in testis development.

Chang TC, Yang Y, Retzel EF, Liu WS.

Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12373-8. doi: 10.1073/pnas.1221104110. Epub 2013 Jul 10. Erratum in: Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):3195.

6.

Analyzing the meiotic transcriptome using isolated meiocytes of Arabidopsis thaliana.

Chen C, Retzel EF.

Methods Mol Biol. 2013;990:203-13. doi: 10.1007/978-1-62703-333-6_20.

PMID:
23559216
7.

Characterization of a set of novel meiotically-active promoters in Arabidopsis.

Li J, Farmer AD, Lindquist IE, Dukowic-Schulze S, Mudge J, Li T, Retzel EF, Chen C.

BMC Plant Biol. 2012 Jul 9;12:104. doi: 10.1186/1471-2229-12-104.

8.

The Medicago genome provides insight into the evolution of rhizobial symbioses.

Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KF, Gouzy J, Schoof H, Van de Peer Y, Proost S, Cook DR, Meyers BC, Spannagl M, Cheung F, De Mita S, Krishnakumar V, Gundlach H, Zhou S, Mudge J, Bharti AK, Murray JD, Naoumkina MA, Rosen B, Silverstein KA, Tang H, Rombauts S, Zhao PX, Zhou P, Barbe V, Bardou P, Bechner M, Bellec A, Berger A, Bergès H, Bidwell S, Bisseling T, Choisne N, Couloux A, Denny R, Deshpande S, Dai X, Doyle JJ, Dudez AM, Farmer AD, Fouteau S, Franken C, Gibelin C, Gish J, Goldstein S, González AJ, Green PJ, Hallab A, Hartog M, Hua A, Humphray SJ, Jeong DH, Jing Y, Jöcker A, Kenton SM, Kim DJ, Klee K, Lai H, Lang C, Lin S, Macmil SL, Magdelenat G, Matthews L, McCorrison J, Monaghan EL, Mun JH, Najar FZ, Nicholson C, Noirot C, O'Bleness M, Paule CR, Poulain J, Prion F, Qin B, Qu C, Retzel EF, Riddle C, Sallet E, Samain S, Samson N, Sanders I, Saurat O, Scarpelli C, Schiex T, Segurens B, Severin AJ, Sherrier DJ, Shi R, Sims S, Singer SR, Sinharoy S, Sterck L, Viollet A, Wang BB, Wang K, Wang M, Wang X, Warfsmann J, Weissenbach J, White DD, White JD, Wiley GB, Wincker P, Xing Y, Yang L, Yao Z, Ying F, Zhai J, Zhou L, Zuber A, Dénarié J, Dixon RA, May GD, Schwartz DC, Rogers J, Quétier F, Town CD, Roe BA.

Nature. 2011 Nov 16;480(7378):520-4. doi: 10.1038/nature10625.

9.

A high-resolution comparative map of porcine chromosome 4 (SSC4).

Ma JG, Chang TC, Yasue H, Farmer AD, Crow JA, Eyer K, Hiraiwa H, Shimogiri T, Meyers SN, Beever JE, Schook LB, Retzel EF, Beattie CW, Liu WS.

Anim Genet. 2011 Aug;42(4):440-4. doi: 10.1111/j.1365-2052.2010.02140.x. Epub 2010 Dec 1.

PMID:
21749428
10.

The expansion of the PRAME gene family in Eutheria.

Chang TC, Yang Y, Yasue H, Bharti AK, Retzel EF, Liu WS.

PLoS One. 2011 Feb 10;6(2):e16867. doi: 10.1371/journal.pone.0016867.

11.

ZNF280BY and ZNF280AY: autosome derived Y-chromosome gene families in Bovidae.

Yang Y, Chang TC, Yasue H, Bharti AK, Retzel EF, Liu WS.

BMC Genomics. 2011 Jan 7;12:13. doi: 10.1186/1471-2164-12-13.

12.

Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes.

Chen C, Farmer AD, Langley RJ, Mudge J, Crow JA, May GD, Huntley J, Smith AG, Retzel EF.

BMC Plant Biol. 2010 Dec 17;10:280. doi: 10.1186/1471-2229-10-280.

13.

Reaching the depth of the Chinese hamster ovary cell transcriptome.

Jacob NM, Kantardjieff A, Yusufi FN, Retzel EF, Mulukutla BC, Chuah SH, Yap M, Hu WS.

Biotechnol Bioeng. 2010 Apr 1;105(5):1002-9. doi: 10.1002/bit.22588.

PMID:
19882695
14.

Management of High-Throughput DNA Sequencing Projects: Alpheus.

Miller NA, Kingsmore SF, Farmer A, Langley RJ, Mudge J, Crow JA, Gonzalez AJ, Schilkey FD, Kim RJ, van Velkinburgh J, May GD, Black CF, Myers MK, Utsey JP, Frost NS, Sugarbaker DJ, Bueno R, Gullans SR, Baxter SM, Day SW, Retzel EF.

J Comput Sci Syst Biol. 2008 Dec 26;1:132.

15.

Legume Resources: MtDB and Medicago.Org.

Retzel EF, Johnson JE, Crow JA, Lamblin AF, Paule CE.

Methods Mol Biol. 2007;406:261-74.

PMID:
18287697
16.

ForestTreeDB: a database dedicated to the mining of tree transcriptomes.

Pavy N, Johnson JJ, Crow JA, Paule C, Kunau T, MacKay J, Retzel EF.

Nucleic Acids Res. 2007 Jan;35(Database issue):D888-94. Epub 2006 Nov 27.

17.

Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes.

Cannon SB, Sterck L, Rombauts S, Sato S, Cheung F, Gouzy J, Wang X, Mudge J, Vasdewani J, Schiex T, Spannagl M, Monaghan E, Nicholson C, Humphray SJ, Schoof H, Mayer KF, Rogers J, Quétier F, Oldroyd GE, Debellé F, Cook DR, Retzel EF, Roe BA, Town CD, Tabata S, Van de Peer Y, Young ND.

Proc Natl Acad Sci U S A. 2006 Oct 3;103(40):14959-64. Epub 2006 Sep 26. Erratum in: Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):18026. Scheix, Thomas [corrected to Schiex, Thomas].

18.

Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters.

Pavy N, Paule C, Parsons L, Crow JA, Morency MJ, Cooke J, Johnson JE, Noumen E, Guillet-Claude C, Butterfield Y, Barber S, Yang G, Liu J, Stott J, Kirkpatrick R, Siddiqui A, Holt R, Marra M, Seguin A, Retzel E, Bousquet J, MacKay J.

BMC Genomics. 2005 Oct 19;6:144.

19.

Databases and information integration for the Medicago truncatula genome and transcriptome.

Cannon SB, Crow JA, Heuer ML, Wang X, Cannon EK, Dwan C, Lamblin AF, Vasdewani J, Mudge J, Cook A, Gish J, Cheung F, Kenton S, Kunau TM, Brown D, May GD, Kim D, Cook DR, Roe BA, Town CD, Young ND, Retzel EF.

Plant Physiol. 2005 May;138(1):38-46.

20.

Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant.

Vodkin LO, Khanna A, Shealy R, Clough SJ, Gonzalez DO, Philip R, Zabala G, Thibaud-Nissen F, Sidarous M, Strömvik MV, Shoop E, Schmidt C, Retzel E, Erpelding J, Shoemaker RC, Rodriguez-Huete AM, Polacco JC, Coryell V, Keim P, Gong G, Liu L, Pardinas J, Schweitzer P.

BMC Genomics. 2004 Sep 29;5:73.

21.

Soybean bacterial artificial chromosome contigs anchored with RFLPs: insights into genome duplication and gene clustering.

Mudge J, Huihuang Y, Denny RL, Howe DK, Danesh D, Marek LF, Retzel E, Shoemaker RC, Young ND.

Genome. 2004 Apr;47(2):361-72.

PMID:
15060589
22.
23.

wCLUTO: a Web-enabled clustering toolkit.

Rasmussen MD, Deshpande MS, Karypis G, Johnson J, Crow JA, Retzel EF.

Plant Physiol. 2003 Oct;133(2):510-6.

24.

MGView: an alignment and visualization tool to enhance gap closure of microbial genomes.

Herron-Olson L, Freeman J, Zhang Q, Retzel EF, Kapur V.

Nucleic Acids Res. 2003 Sep 1;31(17):e106.

25.

TableView: portable genomic data visualization.

Johnson JE, Stromvik MV, Silverstein KA, Crow JA, Shoop E, Retzel EF.

Bioinformatics. 2003 Jul 1;19(10):1292-3.

PMID:
12835275
26.

Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana.

Kirst M, Johnson AF, Baucom C, Ulrich E, Hubbard K, Staggs R, Paule C, Retzel E, Whetten R, Sederoff R.

Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7383-8. Epub 2003 May 27.

27.

MtDB: a database for personalized data mining of the model legume Medicago truncatula transcriptome.

Lamblin AF, Crow JA, Johnson JE, Silverstein KA, Kunau TM, Kilian A, Benz D, Stromvik M, Endré G, VandenBosch KA, Cook DR, Young ND, Retzel EF.

Nucleic Acids Res. 2003 Jan 1;31(1):196-201.

28.

Gene discovery and microarray analysis of cacao (Theobroma cacao L.) varieties.

Jones PG, Allaway D, Gilmour DM, Harris C, Rankin D, Retzel ER, Jones CA.

Planta. 2002 Dec;216(2):255-64. Epub 2002 Oct 30.

PMID:
12447539
29.

Genome sequence survey identifies unique sequences and key virulence genes with unusual rates of amino Acid substitution in bovine Staphylococcus aureus.

Herron LL, Chakravarty R, Dwan C, Fitzgerald JR, Musser JM, Retzel E, Kapur V.

Infect Immun. 2002 Jul;70(7):3978-81.

30.

A compilation of soybean ESTs: generation and analysis.

Shoemaker R, Keim P, Vodkin L, Retzel E, Clifton SW, Waterston R, Smoller D, Coryell V, Khanna A, Erpelding J, Gai X, Brendel V, Raph-Schmidt C, Shoop EG, Vielweber CJ, Schmatz M, Pape D, Bowers Y, Theising B, Martin J, Dante M, Wylie T, Granger C.

Genome. 2002 Apr;45(2):329-38.

PMID:
11962630
31.

Soybean genomic survey: BAC-end sequences near RFLP and SSR markers.

Marek LF, Mudge J, Darnielle L, Grant D, Hanson N, Paz M, Huihuang Y, Denny R, Larson K, Foster-Hartnett D, Cooper A, Danesh D, Larsen D, Schmidt T, Staggs R, Crow JA, Retzel E, Young ND, Shoemaker RC.

Genome. 2001 Aug;44(4):572-81.

PMID:
11550890
32.

MetaFam: a unified classification of protein families. II. Schema and query capabilities.

Shoop E, Silverstein KA, Johnson JE, Retzel EF.

Bioinformatics. 2001 Mar;17(3):262-71.

PMID:
11294791
33.

MetaFam: a unified classification of protein families. I. Overview and statistics.

Silverstein KA, Shoop E, Johnson JE, Retzel EF.

Bioinformatics. 2001 Mar;17(3):249-61.

PMID:
11294790
34.

PANAL: an integrated resource for Protein sequence ANALysis.

Silverstein KA, Kilian A, Freeman JL, Johnson JE, Awad IA, Retzel EF.

Bioinformatics. 2000 Dec;16(12):1157-8.

PMID:
11159337
35.

The MetaFam Server: a comprehensive protein family resource.

Silverstein KA, Shoop E, Johnson JE, Kilian A, Freeman JL, Kunau TM, Awad IA, Mayer M, Retzel EF.

Nucleic Acids Res. 2001 Jan 1;29(1):49-51.

36.

Analysis of xylem formation in pine by cDNA sequencing.

Allona I, Quinn M, Shoop E, Swope K, St Cyr S, Carlis J, Riedl J, Retzel E, Campbell MM, Sederoff R, Whetten RW.

Proc Natl Acad Sci U S A. 1998 Aug 4;95(16):9693-8.

37.

Single cell transcript analysis of human immunodeficiency virus gene expression in the transition from latent to productive infection.

Peng H, Reinhart TA, Retzel EF, Staskus KA, Zupancic M, Haase AT.

Virology. 1995 Jan 10;206(1):16-27.

38.

Mammalian mRNAs encoding protein closely related to ubiquitin-conjugating enzyme encoded by yeast DNA repair gene RAD6.

Woffendin C, Chen ZY, Staskus K, Retzel EF, Plagemann PG.

Biochim Biophys Acta. 1991 Aug 27;1090(1):81-5.

PMID:
1883845
39.

In situ amplification of visna virus DNA in tissue sections reveals a reservoir of latently infected cells.

Staskus KA, Couch L, Bitterman P, Retzel EF, Zupancic M, List J, Haase AT.

Microb Pathog. 1991 Jul;11(1):67-76.

PMID:
1665538
40.

Isolation of replication-competent molecular clones of visna virus.

Staskus KA, Retzel EF, Lewis ED, Silsby JL, St Cyr S, Rank JM, Wietgrefe SW, Haase AT, Cook R, Fast D, et al.

Virology. 1991 Mar;181(1):228-40.

PMID:
1847257
41.
42.

Nucleotide sequence of a cDNA encoding mouse cathepsin D.

Diedrich JF, Staskus KA, Retzel EF, Haase AT.

Nucleic Acids Res. 1990 Dec 11;18(23):7184. No abstract available.

43.

Amplification and detection of lentiviral DNA inside cells.

Haase AT, Retzel EF, Staskus KA.

Proc Natl Acad Sci U S A. 1990 Jul;87(13):4971-5.

44.

Nucleotide sequence analysis of a provirus derived from an individual with tropical spastic paraparesis.

Evangelista A, Maroushek S, Minnigan H, Larson A, Retzel E, Haase A, Gonzalez-Dunia D, McFarlin D, Mingioli E, Jacobson S, et al.

Microb Pathog. 1990 Apr;8(4):259-78.

PMID:
2200942
45.

Comparisons of the pestivirus bovine viral diarrhoea virus with members of the flaviviridae.

Collett MS, Anderson DK, Retzel E.

J Gen Virol. 1988 Oct;69 ( Pt 10):2637-43.

PMID:
2844971
46.

Proteins encoded by bovine viral diarrhea virus: the genomic organization of a pestivirus.

Collett MS, Larson R, Belzer SK, Retzel E.

Virology. 1988 Jul;165(1):200-8.

PMID:
2838958
47.

The molecular pathogenesis of astrogliosis in scrapie and Alzheimer's disease.

Diedrich J, Wietgrefe S, Zupancic M, Staskus K, Retzel E, Haase AT, Race R.

Microb Pathog. 1987 Jun;2(6):435-42.

PMID:
3507557
48.

Genomic differences between strains of lactate dehydrogenase-elevating virus.

Contag CH, Retzel EF, Plagemann PG.

Intervirology. 1986;26(4):228-33.

PMID:
3610568
49.

Nucleotide sequence of the visna lentivirus: relationship to the AIDS virus.

Sonigo P, Alizon M, Staskus K, Klatzmann D, Cole S, Danos O, Retzel E, Tiollais P, Haase A, Wain-Hobson S.

Cell. 1985 Aug;42(1):369-82.

PMID:
2410140
50.

Synthesis in cell culture of the gapped linear duplex DNA of the slow virus visna.

Blum HE, Harris JD, Ventura P, Walker D, Staskus K, Retzel E, Haase AT.

Virology. 1985 Apr 30;142(2):270-7.

PMID:
2997986

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