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Items: 21

1.

Approximate Bayesian Computation for infectious disease modelling.

Minter A, Retkute R.

Epidemics. 2019 Dec;29:100368. doi: 10.1016/j.epidem.2019.100368. Epub 2019 Sep 25.

2.

Dynamics of the 2004 avian influenza H5N1 outbreak in Thailand: The role of duck farming, sequential model fitting and control.

Retkute R, Jewell CP, Van Boeckel TP, Zhang G, Xiao X, Thanapongtharm W, Keeling M, Gilbert M, Tildesley MJ.

Prev Vet Med. 2018 Nov 1;159:171-181. doi: 10.1016/j.prevetmed.2018.09.014. Epub 2018 Sep 19.

3.

Origins Left, Right, and Centre: Increasing the Number of Initiation Sites in the Escherichia coli Chromosome.

Dimude JU, Stein M, Andrzejewska EE, Khalifa MS, Gajdosova A, Retkute R, Skovgaard O, Rudolph CJ.

Genes (Basel). 2018 Jul 27;9(8). pii: E376. doi: 10.3390/genes9080376.

4.

Three-dimensional plant architecture and sunlit-shaded patterns: a stochastic model of light dynamics in canopies.

Retkute R, Townsend AJ, Murchie EH, Jensen OE, Preston SP.

Ann Bot. 2018 Aug 1;122(2):291-302. doi: 10.1093/aob/mcy067.

5.

Suboptimal Acclimation of Photosynthesis to Light in Wheat Canopies.

Townsend AJ, Retkute R, Chinnathambi K, Randall JWP, Foulkes J, Carmo-Silva E, Murchie EH.

Plant Physiol. 2018 Feb;176(2):1233-1246. doi: 10.1104/pp.17.01213. Epub 2017 Dec 7.

6.

Exploring Relationships between Canopy Architecture, Light Distribution, and Photosynthesis in Contrasting Rice Genotypes Using 3D Canopy Reconstruction.

Burgess AJ, Retkute R, Herman T, Murchie EH.

Front Plant Sci. 2017 May 17;8:734. doi: 10.3389/fpls.2017.00734. eCollection 2017.

7.

Image-based 3D canopy reconstruction to determine potential productivity in complex multi-species crop systems.

Burgess AJ, Retkute R, Pound MP, Mayes S, Murchie EH.

Ann Bot. 2017 Mar 1;119(4):517-532. doi: 10.1093/aob/mcw242.

8.

The 4-Dimensional Plant: Effects of Wind-Induced Canopy Movement on Light Fluctuations and Photosynthesis.

Burgess AJ, Retkute R, Preston SP, Jensen OE, Pound MP, Pridmore TP, Murchie EH.

Front Plant Sci. 2016 Sep 21;7:1392. eCollection 2016.

9.

The Consequences of Replicating in the Wrong Orientation: Bacterial Chromosome Duplication without an Active Replication Origin.

Dimude JU, Stockum A, Midgley-Smith SL, Upton AL, Foster HA, Khan A, Saunders NJ, Retkute R, Rudolph CJ.

MBio. 2015 Nov 3;6(6):e01294-15. doi: 10.1128/mBio.01294-15.

10.

High-Resolution Three-Dimensional Structural Data Quantify the Impact of Photoinhibition on Long-Term Carbon Gain in Wheat Canopies in the Field.

Burgess AJ, Retkute R, Pound MP, Foulkes J, Preston SP, Jensen OE, Pridmore TP, Murchie EH.

Plant Physiol. 2015 Oct;169(2):1192-204. doi: 10.1104/pp.15.00722. Epub 2015 Aug 17.

11.

Shaping the landscape of the Escherichia coli chromosome: replication-transcription encounters in cells with an ectopic replication origin.

Ivanova D, Taylor T, Smith SL, Dimude JU, Upton AL, Mehrjouy MM, Skovgaard O, Sherratt DJ, Retkute R, Rudolph CJ.

Nucleic Acids Res. 2015 Sep 18;43(16):7865-77. doi: 10.1093/nar/gkv704. Epub 2015 Jul 8.

12.

Improved detection of focal cortical lesions using 7T magnetisation transfer imaging in patients with multiple sclerosis.

Abdel-Fahim R, Mistry N, Mougin O, Blazejewska A, Pitiot A, Retkute R, Gowland P, Evangelou N.

Mult Scler Relat Disord. 2014 Mar;3(2):258-65. doi: 10.1016/j.msard.2013.10.004. Epub 2013 Oct 19.

PMID:
25878014
13.

Exploiting heterogeneous environments: does photosynthetic acclimation optimize carbon gain in fluctuating light?

Retkute R, Smith-Unna SE, Smith RW, Burgess AJ, Jensen OE, Johnson GN, Preston SP, Murchie EH.

J Exp Bot. 2015 May;66(9):2437-47. doi: 10.1093/jxb/erv055. Epub 2015 Mar 18.

14.

A global profile of replicative polymerase usage.

Daigaku Y, Keszthelyi A, Müller CA, Miyabe I, Brooks T, Retkute R, Hubank M, Nieduszynski CA, Carr AM.

Nat Struct Mol Biol. 2015 Mar;22(3):192-198. doi: 10.1038/nsmb.2962. Epub 2015 Feb 9.

15.

High-resolution replication profiles define the stochastic nature of genome replication initiation and termination.

Hawkins M, Retkute R, Müller CA, Saner N, Tanaka TU, de Moura AP, Nieduszynski CA.

Cell Rep. 2013 Nov 27;5(4):1132-41. doi: 10.1016/j.celrep.2013.10.014. Epub 2013 Nov 7.

16.

The dynamics of genome replication using deep sequencing.

Müller CA, Hawkins M, Retkute R, Malla S, Wilson R, Blythe MJ, Nakato R, Komata M, Shirahige K, de Moura AP, Nieduszynski CA.

Nucleic Acids Res. 2014 Jan;42(1):e3. doi: 10.1093/nar/gkt878. Epub 2013 Oct 1.

17.

Stochastic association of neighboring replicons creates replication factories in budding yeast.

Saner N, Karschau J, Natsume T, Gierlinski M, Retkute R, Hawkins M, Nieduszynski CA, Blow JJ, de Moura AP, Tanaka TU.

J Cell Biol. 2013 Sep 30;202(7):1001-12. doi: 10.1083/jcb.201306143. Epub 2013 Sep 23.

18.

Kinetochores coordinate pericentromeric cohesion and early DNA replication by Cdc7-Dbf4 kinase recruitment.

Natsume T, Müller CA, Katou Y, Retkute R, Gierliński M, Araki H, Blow JJ, Shirahige K, Nieduszynski CA, Tanaka TU.

Mol Cell. 2013 Jun 6;50(5):661-74. doi: 10.1016/j.molcel.2013.05.011.

19.

Mathematical modeling of genome replication.

Retkute R, Nieduszynski CA, de Moura A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Sep;86(3 Pt 1):031916. Epub 2012 Sep 17.

20.

Dynamics of DNA replication in yeast.

Retkute R, Nieduszynski CA, de Moura A.

Phys Rev Lett. 2011 Aug 5;107(6):068103. Epub 2011 Aug 4.

21.

Mathematical modelling of whole chromosome replication.

de Moura AP, Retkute R, Hawkins M, Nieduszynski CA.

Nucleic Acids Res. 2010 Sep;38(17):5623-33. doi: 10.1093/nar/gkq343. Epub 2010 May 10.

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