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Items: 1 to 50 of 152

1.

Multivariate Method for Inferential Identification of Differentially Expressed Genes in Gene Expression Experiments.

Acosta JP, Restrepo S, Henao JD, López-Kleine L.

J Comput Biol. 2019 May 7. doi: 10.1089/cmb.2018.0013. [Epub ahead of print]

PMID:
31063414
2.

Simultaneous Live Imaging of Multiple Endogenous Proteins Reveals a Mechanism for Alzheimer's-Related Plasticity Impairment.

Cook SG, Goodell DJ, Restrepo S, Arnold DB, Bayer KU.

Cell Rep. 2019 Apr 16;27(3):658-665.e4. doi: 10.1016/j.celrep.2019.03.041.

3.

Gene regulatory networks on transfer entropy (GRNTE): a novel approach to reconstruct gene regulatory interactions applied to a case study for the plant pathogen Phytophthora infestans.

Castro JC, Valdés I, Gonzalez-García LN, Danies G, Cañas S, Winck FV, Ñústez CE, Restrepo S, Riaño-Pachón DM.

Theor Biol Med Model. 2019 Apr 9;16(1):7. doi: 10.1186/s12976-019-0103-7.

4.

An Optimized Microsatellite Scheme for Assessing Populations of Xanthomonas phaseoli pv. manihotis.

Rache L, Blondin L, Flores C, Trujillo C, Szurek B, Restrepo S, Koebnik R, Bernal A, Vernière C.

Phytopathology. 2019 May;109(5):859-869. doi: 10.1094/PHYTO-06-18-0210-R. Epub 2019 Mar 25.

PMID:
30908143
5.

Phytophthora betacei, a new species within Phytophthora clade 1c causing late blight on Solanum betaceum in Colombia.

Mideros MF, Turissini DA, Guayazán N, Ibarra-Avila H, Danies G, Cárdenas M, Myers K, Tabima J, Goss EM, Bernal A, Lagos LE, Grajales A, Gonzalez LN, Cooke DEL, Fry WE, Grünwald N, Matute DR, Restrepo S.

Persoonia. 2018 Dec;41:39-55. doi: 10.3767/persoonia.2018.41.03.

6.

A genome-scale metabolic model of potato late blight suggests a photosynthesis suppression mechanism.

Botero K, Restrepo S, Pinzón A.

BMC Genomics. 2018 Dec 11;19(Suppl 8):863. doi: 10.1186/s12864-018-5192-x.

7.

Contrasting Symbiotic Patterns in Two Closely Related Lineages of Trimembered Lichens of the Genus Peltigera.

Pardo-De la Hoz CJ, Magain N, Lutzoni F, Goward T, Restrepo S, Miadlikowska J.

Front Microbiol. 2018 Nov 16;9:2770. doi: 10.3389/fmicb.2018.02770. eCollection 2018.

8.

Determining Whether Geographic Origin and Potato Genotypes Shape the Population Structure of Phytophthora infestans in the Central Region of Colombia.

Chaves SC, Rodríguez MC, Mideros MF, Lucca F, Ñústez CE, Restrepo S.

Phytopathology. 2019 Jan;109(1):145-154. doi: 10.1094/PHYTO-05-18-0157-R. Epub 2018 Nov 21.

PMID:
30474515
9.

Genetic diversity of the entomopathogenic fungus Cordyceps tenuipes in forests and butterfly gardens in Quindío, Colombia.

Castillo LP, Osorio A, Vargas N, Sanjuan T, Grajales A, Restrepo S.

Fungal Biol. 2018 Sep;122(9):891-899. doi: 10.1016/j.funbio.2018.05.003. Epub 2018 May 25.

PMID:
30115323
10.

Recognition of cancer mutations in histone H3K36 by epigenetic writers and readers.

Klein BJ, Krajewski K, Restrepo S, Lewis PW, Strahl BD, Kutateladze TG.

Epigenetics. 2018;13(7):683-692. doi: 10.1080/15592294.2018.1503491. Epub 2018 Aug 23. Review.

PMID:
30045670
11.

A Genome-Scale Metabolic Reconstruction of Phytophthora infestans With the Integration of Transcriptional Data Reveals the Key Metabolic Patterns Involved in the Interaction of Its Host.

Botero D, Valdés I, Rodríguez MJ, Henao D, Danies G, González AF, Restrepo S.

Front Genet. 2018 Jul 10;9:244. doi: 10.3389/fgene.2018.00244. eCollection 2018.

12.

Description of Alicyclobacillus montanus sp. nov., a mixotrophic bacterium isolated from acidic hot springs.

López G, Díaz-Cárdenas C, David Alzate J, Gonzalez LN, Shapiro N, Woyke T, Kyrpides NC, Restrepo S, Baena S.

Int J Syst Evol Microbiol. 2018 May;68(5):1608-1615. doi: 10.1099/ijsem.0.002718. Epub 2018 Mar 20.

PMID:
29557767
13.

Network Analyses in Plant Pathogens.

Botero D, Alvarado C, Bernal A, Danies G, Restrepo S.

Front Microbiol. 2018 Jan 30;9:35. doi: 10.3389/fmicb.2018.00035. eCollection 2018. Review.

14.

Antibacterial Activities of Azole Complexes Combined with Silver Nanoparticles.

Bello-Vieda NJ, Pastrana HF, Garavito MF, Ávila AG, Celis AM, Muñoz-Castro A, Restrepo S, Hurtado JJ.

Molecules. 2018 Feb 8;23(2). pii: E361. doi: 10.3390/molecules23020361.

15.

Draft genome sequence of Dethiosulfovibrio salsuginis DSM 21565T an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring.

Díaz-Cárdenas C, López G, Alzate-Ocampo JD, González LN, Shapiro N, Woyke T, Kyrpides NC, Restrepo S, Baena S.

Stand Genomic Sci. 2017 Dec 20;12:86. doi: 10.1186/s40793-017-0303-x. eCollection 2017.

16.

Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes.

López G, Diaz-Cárdenas C, Shapiro N, Woyke T, Kyrpides NC, David Alzate J, González LN, Restrepo S, Baena S.

Stand Genomic Sci. 2017 Dec 15;12:78. doi: 10.1186/s40793-017-0292-9. eCollection 2017.

17.

The genomic study of an environmental isolate of Scedosporium apiospermum shows its metabolic potential to degrade hydrocarbons.

Morales LT, González-García LN, Orozco MC, Restrepo S, Vives MJ.

Stand Genomic Sci. 2017 Dec 4;12:71. doi: 10.1186/s40793-017-0287-6. eCollection 2017.

18.

Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling.

Triana S, de Cock H, Ohm RA, Danies G, Wösten HAB, Restrepo S, González Barrios AF, Celis A.

Front Microbiol. 2017 Sep 14;8:1772. doi: 10.3389/fmicb.2017.01772. eCollection 2017.

19.

Draft genome and description of Consotaella salsifontis gen. nov. sp. nov., a halophilic, free-living, nitrogen-fixing alphaproteobacterium isolated from an ancient terrestrial saline spring.

Díaz-Cárdenas C, Bernal LF, Caro-Quintero A, López G, David Alzate J, Gonzalez LN, Restrepo S, Shapiro N, Woyke T, Kyrpides NC, Baena S.

Int J Syst Evol Microbiol. 2017 Oct;67(10):3744-3751. doi: 10.1099/ijsem.0.002185. Epub 2017 Sep 7.

PMID:
28875905
20.

Shared peptide binding of HLA Class I and II alleles associate with cutaneous nevirapine hypersensitivity and identify novel risk alleles.

Pavlos R, McKinnon EJ, Ostrov DA, Peters B, Buus S, Koelle D, Chopra A, Schutte R, Rive C, Redwood A, Restrepo S, Bracey A, Kaever T, Myers P, Speers E, Malaker SA, Shabanowitz J, Jing Y, Gaudieri S, Hunt DF, Carrington M, Haas DW, Mallal S, Phillips EJ.

Sci Rep. 2017 Aug 17;7(1):8653. doi: 10.1038/s41598-017-08876-0.

21.

Compartmentalized metabolic network reconstruction of microbial communities to determine the effect of agricultural intervention on soils.

Alvarez-Silva MC, Álvarez-Yela AC, Gómez-Cano F, Zambrano MM, Husserl J, Danies G, Restrepo S, González-Barrios AF.

PLoS One. 2017 Aug 2;12(8):e0181826. doi: 10.1371/journal.pone.0181826. eCollection 2017.

22.

In vitro and in silico characterization of metagenomic soil-derived cellulases capable of hydrolyzing oil palm empty fruit bunch.

Medina LMP, Ardila DC, Zambrano MM, Restrepo S, Barrios AFG.

Biotechnol Rep (Amst). 2017 Jun 10;15:55-62. doi: 10.1016/j.btre.2017.06.003. eCollection 2017 Sep.

23.

Metabolomic profile and nucleoside composition of Cordyceps nidus sp. nov. (Cordycipitaceae): A new source of active compounds.

Chiriví J, Danies G, Sierra R, Schauer N, Trenkamp S, Restrepo S, Sanjuan T.

PLoS One. 2017 Jun 21;12(6):e0179428. doi: 10.1371/journal.pone.0179428. eCollection 2017.

24.

Defining the phylogenetic position of Amanita species from Andean Colombia.

Vargas N, Pardo-de La Hoz CJ, Danies G, Franco-Molano AE, Jiménez P, Restrepo S, Grajales A.

Mycologia. 2017;109(2):261-276. doi: 10.1080/00275514.2017.1309631. Epub 2017 Apr 12.

PMID:
28509612
25.

The role of type III effectors from Xanthomonas axonopodis pv. manihotis in virulence and suppression of plant immunity.

Medina CA, Reyes PA, Trujillo CA, Gonzalez JL, Bejarano DA, Montenegro NA, Jacobs JM, Joe A, Restrepo S, Alfano JR, Bernal A.

Mol Plant Pathol. 2018 Mar;19(3):593-606. doi: 10.1111/mpp.12545. Epub 2017 Apr 5.

PMID:
28218447
26.

Publisher's Note: Driven Open Quantum Systems and Floquet Stroboscopic Dynamics [Phys. Rev. Lett. 117, 250401 (2016)].

Restrepo S, Cerrillo J, Bastidas VM, Angelakis DG, Brandes T.

Phys Rev Lett. 2017 Jan 27;118(4):049903. doi: 10.1103/PhysRevLett.118.049903. Epub 2017 Jan 27.

PMID:
28186792
27.

Oxygen saturation, periodic breathing, and sleep apnea in infants aged 1-4 months old living at 3200 meters above sea level.

Ucrós S, Granados C, Parejo K, Ortega F, Guillén F, Restrepo S, Gil F, Guillén M.

Arch Argent Pediatr. 2017 Feb 1;115(1):54-57. doi: 10.5546/aap.2017.eng.54. English, Spanish.

28.

Highly efficient transformation system for Malassezia furfur and Malassezia pachydermatis using Agrobacterium tumefaciens-mediated transformation.

Celis AM, Vos AM, Triana S, Medina CA, Escobar N, Restrepo S, Wösten HA, de Cock H.

J Microbiol Methods. 2017 Mar;134:1-6. doi: 10.1016/j.mimet.2017.01.001. Epub 2017 Jan 5.

29.

Description of a new anaerobic thermophilic bacterium, Thermoanaerobacterium butyriciformans sp. nov.

López G, Cañas-Duarte SJ, Pinzón-Velasco AM, Vega-Vela NE, Rodríguez M, Restrepo S, Baena S.

Syst Appl Microbiol. 2017 Mar;40(2):86-91. doi: 10.1016/j.syapm.2016.11.006. Epub 2016 Dec 16.

PMID:
28057375
30.

Driven Open Quantum Systems and Floquet Stroboscopic Dynamics.

Restrepo S, Cerrillo J, Bastidas VM, Angelakis DG, Brandes T.

Phys Rev Lett. 2016 Dec 16;117(25):250401. doi: 10.1103/PhysRevLett.117.250401. Epub 2016 Dec 16. Erratum in: Phys Rev Lett. 2017 Jan 27;118(4):049903.

PMID:
28036226
31.

Cultivation and Live Imaging of Drosophila Imaginal Discs.

Restrepo S, Zartman JJ, Basler K.

Methods Mol Biol. 2016;1478:203-213. Review.

PMID:
27730583
32.

Mycofier: a new machine learning-based classifier for fungal ITS sequences.

Delgado-Serrano L, Restrepo S, Bustos JR, Zambrano MM, Anzola JM.

BMC Res Notes. 2016 Aug 11;9(1):402. doi: 10.1186/s13104-016-2203-3.

33.
34.

Geographic Differentiation and Population Genetic Structure of Moniliophthora roreri in the Principal Cocoa Production Areas in Colombia.

Jaimes YY, Gonzalez C, Rojas J, Cornejo OE, Mideros MF, Restrepo S, Cilas C, Furtado EL.

Plant Dis. 2016 Aug;100(8):1548-1558. doi: 10.1094/PDIS-12-15-1498-RE. Epub 2016 May 27.

PMID:
30686241
35.

Pelvic Incidence in Patients with Hip Osteoarthritis.

Raphael IJ, Rasouli MR, Kepler CK, Restrepo S, Albert TJ, Radcliff KE.

Arch Bone Jt Surg. 2016 Apr;4(2):132-6.

36.

Genotyping of Fusarium Isolates from Onychomycoses in Colombia: Detection of Two New Species Within the Fusarium solani Species Complex and In Vitro Antifungal Susceptibility Testing.

Guevara-Suarez M, Cano-Lira JF, de García MC, Sopo L, De Bedout C, Cano LE, García AM, Motta A, Amézquita A, Cárdenas M, Espinel-Ingroff A, Guarro J, Restrepo S, Celis A.

Mycopathologia. 2016 Apr;181(3-4):165-74. doi: 10.1007/s11046-016-9983-9. Epub 2016 Mar 4.

PMID:
26943726
37.

EpiTools: An Open-Source Image Analysis Toolkit for Quantifying Epithelial Growth Dynamics.

Heller D, Hoppe A, Restrepo S, Gatti L, Tournier AL, Tapon N, Basler K, Mao Y.

Dev Cell. 2016 Jan 11;36(1):103-116. doi: 10.1016/j.devcel.2015.12.012.

38.

Microbial and Functional Diversity within the Phyllosphere of Espeletia Species in an Andean High-Mountain Ecosystem.

Ruiz-Pérez CA, Restrepo S, Zambrano MM.

Appl Environ Microbiol. 2016 Jan 8;82(6):1807-1817. doi: 10.1128/AEM.02781-15.

39.

Evolutionary Origins of Rhizarian Parasites.

Sierra R, Cañas-Duarte SJ, Burki F, Schwelm A, Fogelqvist J, Dixelius C, González-García LN, Gile GH, Slamovits CH, Klopp C, Restrepo S, Arzul I, Pawlowski J.

Mol Biol Evol. 2016 Apr;33(4):980-3. doi: 10.1093/molbev/msv340. Epub 2015 Dec 16.

PMID:
26681153
40.

Temporal changes in the current practice of primary angioplasty: a real life experience of a single high-volume center.

Tomassini F, Charrier L, Varbella F, Cerrato E, Gagnor A, Rolfo C, Echavarria-Pinto M, Restrepo SP, Nevola R, Baricocchi D, Escaned J, Minniti D, Conte MR, Berchialla P, Gianino MM.

Cardiovasc Revasc Med. 2016 Jan-Feb;17(1):5-9. doi: 10.1016/j.carrev.2015.10.004. Epub 2015 Oct 30.

41.

Draft Genome Sequence of the Animal and Human Pathogen Malassezia pachydermatis Strain CBS 1879.

Triana S, González A, Ohm RA, Wösten HA, de Cock H, Restrepo S, Celis A.

Genome Announc. 2015 Oct 15;3(5). pii: e01197-15. doi: 10.1128/genomeA.01197-15.

42.

Five new species of entomopathogenic fungi from the Amazon and evolution of neotropical Ophiocordyceps.

Sanjuan TI, Franco-Molano AE, Kepler RM, Spatafora JW, Tabima J, Vasco-Palacios AM, Restrepo S.

Fungal Biol. 2015 Oct;119(10):901-916. doi: 10.1016/j.funbio.2015.06.010. Epub 2015 Jul 8.

PMID:
26399185
43.

Oxygen saturation, periodic breathing and apnea during sleep in infants 1 to 4 month old living at 2,560 meters above sea level.

Ucrós S, Granados C, Parejo K, Guillén F, Ortega F, Restrepo S, Gil F, Guillén M.

Arch Argent Pediatr. 2015 Aug;113(4):341-4. doi: 10.5546/aap.2015.341. English, Spanish.

44.

Development of a genetic tool for functional screening of anti-malarial bioactive extracts in metagenomic libraries.

Mongui A, Pérez-Llanos FJ, Yamamoto MM, Lozano M, Zambrano MM, Del Portillo P, Fernández-Becerra C, Restrepo S, Del Portillo HA, Junca H.

Malar J. 2015 Jun 4;14:233. doi: 10.1186/s12936-015-0748-6.

45.

Response Letter to Editor In Reference to Letter to Editor about "Adverse Clinical Outcomes in a Primary Modular Neck/Stem System".

Restrepo C, Ross D, Restrepo S, Heller S, Goyal N, Moore R, Hozack WJ.

J Arthroplasty. 2015 May;30(5):899. doi: 10.1016/j.arth.2014.12.007. Epub 2014 Dec 26. No abstract available.

PMID:
25583684
46.

An ephemeral sexual population of Phytophthora infestans in the Northeastern United States and Canada.

Danies G, Myers K, Mideros MF, Restrepo S, Martin FN, Cooke DE, Smart CD, Ristaino JB, Seaman AJ, Gugino BK, Grünwald NJ, Fry WE.

PLoS One. 2014 Dec 31;9(12):e116354. doi: 10.1371/journal.pone.0116354. eCollection 2014.

47.

Annotation of a hybrid partial genome of the coffee rust (Hemileia vastatrix) contributes to the gene repertoire catalog of the Pucciniales.

Cristancho MA, Botero-Rozo DO, Giraldo W, Tabima J, Riaño-Pachón DM, Escobar C, Rozo Y, Rivera LF, Durán A, Restrepo S, Eilam T, Anikster Y, Gaitán AL.

Front Plant Sci. 2014 Oct 31;5:594. doi: 10.3389/fpls.2014.00594. eCollection 2014.

48.

Identification of transcription factor genes and their correlation with the high diversity of stramenopiles.

Buitrago-Flórez FJ, Restrepo S, Riaño-Pachón DM.

PLoS One. 2014 Nov 6;9(11):e111841. doi: 10.1371/journal.pone.0111841. eCollection 2014.

49.

A qualitative study of vaccine acceptability and decision making among pregnant women in Morocco during the A (H1N1) pdm09 pandemic.

Lohiniva AL, Barakat A, Dueger E, Restrepo S, El Aouad R.

PLoS One. 2014 Oct 14;9(10):e96244. doi: 10.1371/journal.pone.0096244. eCollection 2014.

50.

Adverse clinical outcomes in a primary modular neck/stem system.

Restrepo C, Ross D, Restrepo S, Heller S, Goyal N, Moore R, Hozack WJ.

J Arthroplasty. 2014 Sep;29(9 Suppl):173-8. doi: 10.1016/j.arth.2014.01.040. Epub 2014 May 27.

PMID:
24973928

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