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Items: 27

1.

Genetic tool development in marine protists: emerging model organisms for experimental cell biology.

Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M Jr, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, Breglia SA, Brownlee C, Burger G, Cerutti H, Cesaroni R, Chiurillo MA, Clemente T, Coles DB, Collier JL, Cooney EC, Coyne K, Docampo R, Dupont CL, Edgcomb V, Einarsson E, Elustondo PA, Federici F, Freire-Beneitez V, Freyria NJ, Fukuda K, García PA, Girguis PR, Gomaa F, Gornik SG, Guo J, Hampl V, Hanawa Y, Haro-Contreras ER, Hehenberger E, Highfield A, Hirakawa Y, Hopes A, Howe CJ, Hu I, Ibañez J, Irwin NAT, Ishii Y, Janowicz NE, Jones AC, Kachale A, Fujimura-Kamada K, Kaur B, Kaye JZ, Kazana E, Keeling PJ, King N, Klobutcher LA, Lander N, Lassadi I, Li Z, Lin S, Lozano JC, Luan F, Maruyama S, Matute T, Miceli C, Minagawa J, Moosburner M, Najle SR, Nanjappa D, Nimmo IC, Noble L, Novák Vanclová AMG, Nowacki M, Nuñez I, Pain A, Piersanti A, Pucciarelli S, Pyrih J, Rest JS, Rius M, Robertson D, Ruaud A, Ruiz-Trillo I, Sigg MA, Silver PA, Slamovits CH, Jason Smith G, Sprecher BN, Stern R, Swart EC, Tsaousis AD, Tsypin L, Turkewitz A, Turnšek J, Valach M, Vergé V, von Dassow P, von der Haar T, Waller RF, Wang L, Wen X, Wheeler G, Woods A, Zhang H, Mock T, Worden AZ, Lukeš J.

Nat Methods. 2020 Apr 6. doi: 10.1038/s41592-020-0796-x. [Epub ahead of print]

PMID:
32251396
2.

Swimming, gliding, and rolling toward the mainstream: cell biology of marine protists.

Collier JL, Rest JS.

Mol Biol Cell. 2019 May 15;30(11):1245-1248. doi: 10.1091/mbc.E18-11-0724. Review.

3.

What Makes a Kinase Promiscuous for Inhibitors?

Hanson SM, Georghiou G, Thakur MK, Miller WT, Rest JS, Chodera JD, Seeliger MA.

Cell Chem Biol. 2019 Mar 21;26(3):390-399.e5. doi: 10.1016/j.chembiol.2018.11.005. Epub 2019 Jan 3.

4.

Widespread ancient whole-genome duplications in Malpighiales coincide with Eocene global climatic upheaval.

Cai L, Xi Z, Amorim AM, Sugumaran M, Rest JS, Liu L, Davis CC.

New Phytol. 2019 Jan;221(1):565-576. doi: 10.1111/nph.15357. Epub 2018 Jul 21.

5.

Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools.

Franks SJ, Kane NC, O'Hara NB, Tittes S, Rest JS.

Mol Ecol. 2016 Aug;25(15):3622-31. doi: 10.1111/mec.13615. Epub 2016 Apr 13.

6.

Meta-analysis and meta-regression of transcriptomic responses to water stress in Arabidopsis.

Rest JS, Wilkins O, Yuan W, Purugganan MD, Gurevitch J.

Plant J. 2016 Feb;85(4):548-60. doi: 10.1111/tpj.13124.

7.

Increased susceptibility to fungal disease accompanies adaptation to drought in Brassica rapa.

O'Hara NB, Rest JS, Franks SJ.

Evolution. 2016 Jan;70(1):241-8. doi: 10.1111/evo.12833. Epub 2015 Dec 24.

8.

Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies.

Xi Z, Liu L, Rest JS, Davis CC.

Syst Biol. 2014 Nov;63(6):919-32. doi: 10.1093/sysbio/syu055. Epub 2014 Jul 30.

PMID:
25077515
9.

Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change.

Martinez C, Rest JS, Kim AR, Ludwig M, Kreitman M, White K, Reinitz J.

Mol Biol Evol. 2014 Apr;31(4):903-16. doi: 10.1093/molbev/msu042. Epub 2014 Jan 9.

10.

Phylogenomics and coalescent analyses resolve extant seed plant relationships.

Xi Z, Rest JS, Davis CC.

PLoS One. 2013 Nov 21;8(11):e80870. doi: 10.1371/journal.pone.0080870. eCollection 2013.

11.

Massive mitochondrial gene transfer in a parasitic flowering plant clade.

Xi Z, Wang Y, Bradley RK, Sugumaran M, Marx CJ, Rest JS, Davis CC.

PLoS Genet. 2013;9(2):e1003265. doi: 10.1371/journal.pgen.1003265. Epub 2013 Feb 14.

12.

Coevolution trumps pleiotropy: carbon assimilation traits are independent of metabolic network structure in budding yeast.

Opulente DA, Morales CM, Carey LB, Rest JS.

PLoS One. 2013;8(1):e54403. doi: 10.1371/journal.pone.0054403. Epub 2013 Jan 10.

13.

Nonlinear fitness consequences of variation in expression level of a eukaryotic gene.

Rest JS, Morales CM, Waldron JB, Opulente DA, Fisher J, Moon S, Bullaughey K, Carey LB, Dedousis D.

Mol Biol Evol. 2013 Feb;30(2):448-56. doi: 10.1093/molbev/mss248. Epub 2012 Oct 27.

14.

Horizontal transfer of expressed genes in a parasitic flowering plant.

Xi Z, Bradley RK, Wurdack KJ, Wong K, Sugumaran M, Bomblies K, Rest JS, Davis CC.

BMC Genomics. 2012 Jun 8;13:227.

15.

Contribution of transcription factor binding site motif variants to condition-specific gene expression patterns in budding yeast.

Rest JS, Bullaughey K, Morris GP, Li WH.

PLoS One. 2012;7(2):e32274. doi: 10.1371/journal.pone.0032274. Epub 2012 Feb 23.

16.

Common fragile sites are characterized by histone hypoacetylation.

Jiang Y, Lucas I, Young DJ, Davis EM, Karrison T, Rest JS, Le Beau MM.

Hum Mol Genet. 2009 Dec 1;18(23):4501-12. doi: 10.1093/hmg/ddp410. Epub 2009 Aug 28.

17.

Sulfate activation enzymes: phylogeny and association with pyrophosphatase.

Bradley ME, Rest JS, Li WH, Schwartz NB.

J Mol Evol. 2009 Jan;68(1):1-13. doi: 10.1007/s00239-008-9181-6. Epub 2008 Dec 6.

PMID:
19067028
18.

Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages.

Brown JW, Rest JS, García-Moreno J, Sorenson MD, Mindell DP.

BMC Biol. 2008 Jan 28;6:6. doi: 10.1186/1741-7007-6-6.

19.

Interaction of human HSP22 (HSPB8) with other small heat shock proteins.

Sun X, Fontaine JM, Rest JS, Shelden EA, Welsh MJ, Benndorf R.

J Biol Chem. 2004 Jan 23;279(4):2394-402. Epub 2003 Oct 31.

20.
21.

Molecular systematics of primary reptilian lineages and the tuatara mitochondrial genome.

Rest JS, Ast JC, Austin CC, Waddell PJ, Tibbetts EA, Hay JM, Mindell DP.

Mol Phylogenet Evol. 2003 Nov;29(2):289-97.

PMID:
13678684
22.

The sperm outer dense fiber protein is the 10th member of the superfamily of mammalian small stress proteins.

Fontaine JM, Rest JS, Welsh MJ, Benndorf R.

Cell Stress Chaperones. 2003 Spring;8(1):62-9.

23.

Retroids in archaea: phylogeny and lateral origins.

Rest JS, Mindell DP.

Mol Biol Evol. 2003 Jul;20(7):1134-42. Epub 2003 May 30.

PMID:
12777534
24.

Differential rates of evolution for the ZFY-related zinc finger genes, Zfy, Zfx, and Zfa in the mouse genus Mus.

Tucker PK, Adkins RM, Rest JS.

Mol Biol Evol. 2003 Jun;20(6):999-1005. Epub 2003 Apr 25.

PMID:
12716983
25.

rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny.

Dimmic MW, Rest JS, Mindell DP, Goldstein RA.

J Mol Evol. 2002 Jul;55(1):65-73.

26.

Distribution of DHPS mutations among ITS subtypes of P. carinii f. sp. hominis.

Meshnick SR, Hossler PA, Enger KS, Kazanjian P, Rest JS, Mindell D, Li B, Lee CH, Nimri LF, Carter JL, Beard CB, Huang L.

J Eukaryot Microbiol. 2001;Suppl:126S-128S. No abstract available.

PMID:
11906022
27.

Isolation and characterization of a zebrafish homologue of the cone rod homeobox gene.

Liu Y, Shen Y, Rest JS, Raymond PA, Zack DJ.

Invest Ophthalmol Vis Sci. 2001 Feb;42(2):481-7.

PMID:
11157887

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