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Items: 20


Entamoeba histolytica Up-Regulates MicroRNA-643 to Promote Apoptosis by Targeting XIAP in Human Epithelial Colon Cells.

López-Rosas I, López-Camarillo C, Salinas-Vera YM, Hernández-de la Cruz ON, Palma-Flores C, Chávez-Munguía B, Resendis-Antonio O, Guillen N, Pérez-Plasencia C, Álvarez-Sánchez ME, Ramírez-Moreno E, Marchat LA.

Front Cell Infect Microbiol. 2019 Jan 8;8:437. doi: 10.3389/fcimb.2018.00437. eCollection 2018.


Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers.

Hale VL, Jeraldo P, Chen J, Mundy M, Yao J, Priya S, Keeney G, Lyke K, Ridlon J, White BA, French AJ, Thibodeau SN, Diener C, Resendis-Antonio O, Gransee J, Dutta T, Petterson XM, Sung J, Blekhman R, Boardman L, Larson D, Nelson H, Chia N.

Genome Med. 2018 Oct 31;10(1):78. doi: 10.1186/s13073-018-0586-6.


Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer.

Hale VL, Jeraldo P, Mundy M, Yao J, Keeney G, Scott N, Cheek EH, Davidson J, Greene M, Martinez C, Lehman J, Pettry C, Reed E, Lyke K, White BA, Diener C, Resendis-Antonio O, Gransee J, Dutta T, Petterson XM, Boardman L, Larson D, Nelson H, Chia N.

Methods. 2018 Oct 1;149:59-68. doi: 10.1016/j.ymeth.2018.04.024. Epub 2018 Apr 26.


Editorial: Systems Biology and the Challenge of Deciphering the Metabolic Mechanisms Underlying Cancer.

Resendis-Antonio O, Diener C.

Front Physiol. 2017 Jul 28;8:537. doi: 10.3389/fphys.2017.00537. eCollection 2017. No abstract available.


"Gestaltomics": Systems Biology Schemes for the Study of Neuropsychiatric Diseases.

Gutierrez Najera NA, Resendis-Antonio O, Nicolini H.

Front Physiol. 2017 May 9;8:286. doi: 10.3389/fphys.2017.00286. eCollection 2017. Review.


Natural selection drove metabolic specialization of the chromatophore in Paulinella chromatophora.

Valadez-Cano C, Olivares-Hernández R, Resendis-Antonio O, DeLuna A, Delaye L.

BMC Evol Biol. 2017 Apr 14;17(1):99. doi: 10.1186/s12862-017-0947-6.


Personalized Prediction of Proliferation Rates and Metabolic Liabilities in Cancer Biopsies.

Diener C, Resendis-Antonio O.

Front Physiol. 2016 Dec 27;7:644. doi: 10.3389/fphys.2016.00644. eCollection 2016.


Host-Microbiome Interaction and Cancer: Potential Application in Precision Medicine.

Contreras AV, Cocom-Chan B, Hernandez-Montes G, Portillo-Bobadilla T, Resendis-Antonio O.

Front Physiol. 2016 Dec 9;7:606. doi: 10.3389/fphys.2016.00606. eCollection 2016. Review.


Evolution of Centrality Measurements for the Detection of Essential Proteins in Biological Networks.

Jalili M, Salehzadeh-Yazdi A, Gupta S, Wolkenhauer O, Yaghmaie M, Resendis-Antonio O, Alimoghaddam K.

Front Physiol. 2016 Aug 26;7:375. doi: 10.3389/fphys.2016.00375. eCollection 2016. No abstract available.


The space of enzyme regulation in HeLa cells can be inferred from its intracellular metabolome.

Diener C, Muñoz-Gonzalez F, Encarnación S, Resendis-Antonio O.

Sci Rep. 2016 Jun 23;6:28415. doi: 10.1038/srep28415.


Modeling metabolism: a window toward a comprehensive interpretation of networks in cancer.

Resendis-Antonio O, González-Torres C, Jaime-Muñoz G, Hernandez-Patiño CE, Salgado-Muñoz CF.

Semin Cancer Biol. 2015 Feb;30:79-87. doi: 10.1016/j.semcancer.2014.04.003. Epub 2014 Apr 18. Review.


Systems biology of cancer: moving toward the integrative study of the metabolic alterations in cancer cells.

Hernández Patiño CE, Jaime-Muñoz G, Resendis-Antonio O.

Front Physiol. 2013 Jan 3;3:481. doi: 10.3389/fphys.2012.00481. eCollection 2012.


Functional modules, structural topology, and optimal activity in metabolic networks.

Resendis-Antonio O, Hernández M, Mora Y, Encarnación S.

PLoS Comput Biol. 2012;8(10):e1002720. doi: 10.1371/journal.pcbi.1002720. Epub 2012 Oct 11.


Systems biology of bacterial nitrogen fixation: high-throughput technology and its integrative description with constraint-based modeling.

Resendis-Antonio O, Hernández M, Salazar E, Contreras S, Batallar GM, Mora Y, Encarnación S.

BMC Syst Biol. 2011 Jul 29;5:120. doi: 10.1186/1752-0509-5-120.


Proteomic patterns of cervical cancer cell lines, a network perspective.

Higareda-Almaraz JC, Enríquez-Gasca Mdel R, Hernández-Ortiz M, Resendis-Antonio O, Encarnación-Guevara S.

BMC Syst Biol. 2011 Jun 22;5:96. doi: 10.1186/1752-0509-5-96.


Modeling core metabolism in cancer cells: surveying the topology underlying the Warburg effect.

Resendis-Antonio O, Checa A, Encarnación S.

PLoS One. 2010 Aug 25;5(8):e12383. doi: 10.1371/journal.pone.0012383.


Filling kinetic gaps: dynamic modeling of metabolism where detailed kinetic information is lacking.

Resendis-Antonio O.

PLoS One. 2009;4(3):e4967. doi: 10.1371/journal.pone.0004967. Epub 2009 Mar 23.


Regulation by transcription factors in bacteria: beyond description.

Balleza E, López-Bojorquez LN, Martínez-Antonio A, Resendis-Antonio O, Lozada-Chávez I, Balderas-Martínez YI, Encarnación S, Collado-Vides J.

FEMS Microbiol Rev. 2009 Jan;33(1):133-51. doi: 10.1111/j.1574-6976.2008.00145.x. Review.


Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli.

Resendis-Antonio O, Reed JL, Encarnación S, Collado-Vides J, Palsson BØ.

PLoS Comput Biol. 2007 Oct;3(10):1887-95. Epub 2007 Aug 17.


Modular analysis of the transcriptional regulatory network of E. coli.

Resendis-Antonio O, Freyre-González JA, Menchaca-Méndez R, Gutiérrez-Ríos RM, Martínez-Antonio A, Avila-Sánchez C, Collado-Vides J.

Trends Genet. 2005 Jan;21(1):16-20.


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