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Soil texture and precipitation seasonality influence plant community structure in North American temperate shrub steppe.

Renne RR, Bradford JB, Burke IC, Lauenroth WK.

Ecology. 2019 Jul 17:e02824. doi: 10.1002/ecy.2824. [Epub ahead of print]


Gammaherpesvirus RNAs Come Full Circle.

Ungerleider NA, Tibbetts SA, Renne R, Flemington EK.

MBio. 2019 Apr 2;10(2). pii: e00071-19. doi: 10.1128/mBio.00071-19. Review.


Comparative Analysis of Gammaherpesvirus Circular RNA Repertoires: Conserved and Unique Viral Circular RNAs.

Ungerleider NA, Jain V, Wang Y, Maness NJ, Blair RV, Alvarez X, Midkiff C, Kolson D, Bai S, Roberts C, Moss WN, Wang X, Serfecz J, Seddon M, Lehman T, Ma T, Dong Y, Renne R, Tibbetts SA, Flemington EK.

J Virol. 2019 Mar 5;93(6). pii: e01952-18. doi: 10.1128/JVI.01952-18. Print 2019 Mar 15.


Contemporary Ribonomics Methods for Viral microRNA Target Analysis.

Gay LA, Turner PC, Renne R.

Noncoding RNA. 2018 Nov 9;4(4). pii: E31. doi: 10.3390/ncrna4040031. Review.


Connivance, Complicity, or Collusion? The Role of Noncoding RNAs in Promoting Gammaherpesvirus Tumorigenesis.

Bullard WL, Flemington EK, Renne R, Tibbetts SA.

Trends Cancer. 2018 Nov;4(11):729-740. doi: 10.1016/j.trecan.2018.09.005. Epub 2018 Oct 10. Review.


The Epstein Barr virus circRNAome.

Ungerleider N, Concha M, Lin Z, Roberts C, Wang X, Cao S, Baddoo M, Moss WN, Yu Y, Seddon M, Lehman T, Tibbetts S, Renne R, Dong Y, Flemington EK.

PLoS Pathog. 2018 Aug 6;14(8):e1007206. doi: 10.1371/journal.ppat.1007206. eCollection 2018 Aug.


Computational analysis of ribonomics datasets identifies long non-coding RNA targets of γ-herpesviral miRNAs.

Sethuraman S, Thomas M, Gay LA, Renne R.

Nucleic Acids Res. 2018 Sep 19;46(16):8574-8589. doi: 10.1093/nar/gky459.


Visualization of molecular biology: The LANA tether.

Jain V, Renne R.

Proc Natl Acad Sci U S A. 2018 May 8;115(19):4816-4818. doi: 10.1073/pnas.1804797115. Epub 2018 Apr 24. No abstract available.


Modified Cross-Linking, Ligation, and Sequencing of Hybrids (qCLASH) Identifies Kaposi's Sarcoma-Associated Herpesvirus MicroRNA Targets in Endothelial Cells.

Gay LA, Sethuraman S, Thomas M, Turner PC, Renne R.

J Virol. 2018 Mar 28;92(8). pii: e02138-17. doi: 10.1128/JVI.02138-17. Print 2018 Apr 15.


microRNA dependent and independent deregulation of long non-coding RNAs by an oncogenic herpesvirus.

Sethuraman S, Gay LA, Jain V, Haecker I, Renne R.

PLoS Pathog. 2017 Jul 17;13(7):e1006508. doi: 10.1371/journal.ppat.1006508. eCollection 2017 Jul.


A viral microRNA downregulates metastasis suppressor CD82 and induces cell invasion and angiogenesis by activating the c-Met signaling.

Li W, Hu M, Wang C, Lu H, Chen F, Xu J, Shang Y, Wang F, Qin J, Yan Q, Krueger BJ, Renne R, Gao SJ, Lu C.

Oncogene. 2017 Sep 21;36(38):5407-5420. doi: 10.1038/onc.2017.139. Epub 2017 May 22.


The SH3BGR/STAT3 Pathway Regulates Cell Migration and Angiogenesis Induced by a Gammaherpesvirus MicroRNA.

Li W, Yan Q, Ding X, Shen C, Hu M, Zhu Y, Qin D, Lu H, Krueger BJ, Renne R, Gao SJ, Lu C.

PLoS Pathog. 2016 Apr 29;12(4):e1005605. doi: 10.1371/journal.ppat.1005605. eCollection 2016 Apr.


A Gammaherpesvirus Noncoding RNA Is Essential for Hematogenous Dissemination and Establishment of Peripheral Latency.

Feldman ER, Kara M, Oko LM, Grau KR, Krueger BJ, Zhang J, Feng P, van Dyk LF, Renne R, Tibbetts SA.

mSphere. 2016 Apr;1(2). pii: e00105-15. Epub 2016 Mar 2.


A KSHV microRNA enhances viral latency and induces angiogenesis by targeting GRK2 to activate the CXCR2/AKT pathway.

Li W, Jia X, Shen C, Zhang M, Xu J, Shang Y, Zhu K, Hu M, Yan Q, Qin D, Lee MS, Zhu J, Lu H, Krueger BJ, Renne R, Gao SJ, Lu C.

Oncotarget. 2016 May 31;7(22):32286-305. doi: 10.18632/oncotarget.8591.


A Toolbox for Herpesvirus miRNA Research: Construction of a Complete Set of KSHV miRNA Deletion Mutants.

Jain V, Plaisance-Bonstaff K, Sangani R, Lanier C, Dolce A, Hu J, Brulois K, Haecker I, Turner P, Renne R, Krueger B.

Viruses. 2016 Feb 19;8(2). pii: E54. doi: 10.3390/v8020054.


Role of heme oxygenase-1 in the pathogenesis and tumorigenicity of Kaposi's sarcoma-associated herpesvirus.

Dai L, Qiao J, Nguyen D, Struckhoff AP, Doyle L, Bonstaff K, Del Valle L, Parsons C, Toole BP, Renne R, Qin Z.

Oncotarget. 2016 Mar 1;7(9):10459-71. doi: 10.18632/oncotarget.7227.


Human Mesenchymal Stem Cells of Diverse Origins Support Persistent Infection with Kaposi's Sarcoma-Associated Herpesvirus and Manifest Distinct Angiogenic, Invasive, and Transforming Phenotypes.

Lee MS, Yuan H, Jeon H, Zhu Y, Yoo S, Shi S, Krueger B, Renne R, Lu C, Jung JU, Gao SJ.

MBio. 2016 Jan 26;7(1):e02109-15. doi: 10.1128/mBio.02109-15.


Kaposi's Sarcoma-Associated Herpesvirus (KSHV) Induces the Oncogenic miR-17-92 Cluster and Down-Regulates TGF-β Signaling.

Choi HS, Jain V, Krueger B, Marshall V, Kim CH, Shisler JL, Whitby D, Renne R.

PLoS Pathog. 2015 Nov 6;11(11):e1005255. doi: 10.1371/journal.ppat.1005255. eCollection 2015.


A KSHV microRNA Directly Targets G Protein-Coupled Receptor Kinase 2 to Promote the Migration and Invasion of Endothelial Cells by Inducing CXCR2 and Activating AKT Signaling.

Hu M, Wang C, Li W, Lu W, Bai Z, Qin D, Yan Q, Zhu J, Krueger BJ, Renne R, Gao SJ, Lu C.

PLoS Pathog. 2015 Sep 24;11(9):e1005171. doi: 10.1371/journal.ppat.1005171. eCollection 2015 Sep.


Characterization of biochemical, functional and structural changes in mice respiratory organs chronically exposed to cigarette smoke.

Tsuji H, Fujimoto H, Lee KM, Renne R, Iwanaga A, Okubo C, Onami S, Nomura AK, Nishino T, Yoshimura H.

Inhal Toxicol. 2015;27(7):342-53. doi: 10.3109/08958378.2015.1051248. Epub 2015 Jul 3.


Biological responses in rats exposed to mainstream smoke from a heated cigarette compared to a conventional reference cigarette.

Fujimoto H, Tsuji H, Okubo C, Fukuda I, Nishino T, Lee KM, Renne R, Yoshimura H.

Inhal Toxicol. 2015 Mar;27(4):224-36. doi: 10.3109/08958378.2015.1027799. Epub 2015 May 13.


A unifying gene signature for adenoid cystic cancer identifies parallel MYB-dependent and MYB-independent therapeutic targets.

Gao R, Cao C, Zhang M, Lopez MC, Yan Y, Chen Z, Mitani Y, Zhang L, Zajac-Kaye M, Liu B, Wu L, Renne R, Baker HV, El-Naggar A, Kaye FJ.

Oncotarget. 2014 Dec 30;5(24):12528-42.


Identification of the physiological gene targets of the essential lytic replicative Kaposi's sarcoma-associated herpesvirus ORF57 protein.

Verma D, Li DJ, Krueger B, Renne R, Swaminathan S.

J Virol. 2015 Feb;89(3):1688-702. doi: 10.1128/JVI.02663-14. Epub 2014 Nov 19.


High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project.

Cao S, Strong MJ, Wang X, Moss WN, Concha M, Lin Z, O'Grady T, Baddoo M, Fewell C, Renne R, Flemington EK.

J Virol. 2015 Jan;89(1):713-29. doi: 10.1128/JVI.02570-14. Epub 2014 Oct 29.


KSHV miRNAs decrease expression of lytic genes in latently infected PEL and endothelial cells by targeting host transcription factors.

Plaisance-Bonstaff K, Choi HS, Beals T, Krueger BJ, Boss IW, Gay LA, Haecker I, Hu J, Renne R.

Viruses. 2014 Oct 23;6(10):4005-23. doi: 10.3390/v6104005. Review.


A systems biology approach identified different regulatory networks targeted by KSHV miR-K12-11 in B cells and endothelial cells.

Yang Y, Boss IW, McIntyre LM, Renne R.

BMC Genomics. 2014 Aug 8;15:668. doi: 10.1186/1471-2164-15-668.


LANA binds to multiple active viral and cellular promoters and associates with the H3K4methyltransferase hSET1 complex.

Hu J, Yang Y, Turner PC, Jain V, McIntyre LM, Renne R.

PLoS Pathog. 2014 Jul 17;10(7):e1004240. doi: 10.1371/journal.ppat.1004240. eCollection 2014 Jul.


Helminth infection reactivates latent γ-herpesvirus via cytokine competition at a viral promoter.

Reese TA, Wakeman BS, Choi HS, Hufford MM, Huang SC, Zhang X, Buck MD, Jezewski A, Kambal A, Liu CY, Goel G, Murray PJ, Xavier RJ, Kaplan MH, Renne R, Speck SH, Artyomov MN, Pearce EJ, Virgin HW.

Science. 2014 Aug 1;345(6196):573-7. doi: 10.1126/science.1254517. Epub 2014 Jun 26.


HITS-CLIP and PAR-CLIP advance viral miRNA targetome analysis.

Haecker I, Renne R.

Crit Rev Eukaryot Gene Expr. 2014;24(2):101-16. Review.


Genomic and proteomic analysis of transcription factor TFII-I reveals insight into the response to cellular stress.

Fan AX, Papadopoulos GL, Hossain MA, Lin IJ, Hu J, Tang TM, Kilberg MS, Renne R, Strouboulis J, Bungert J.

Nucleic Acids Res. 2014 Jul;42(12):7625-41. doi: 10.1093/nar/gku467. Epub 2014 May 29.


Virus-encoded microRNAs facilitate gammaherpesvirus latency and pathogenesis in vivo.

Feldman ER, Kara M, Coleman CB, Grau KR, Oko LM, Krueger BJ, Renne R, van Dyk LF, Tibbetts SA.

MBio. 2014 May 27;5(3):e00981-14. doi: 10.1128/mBio.00981-14.


Leveraging biological replicates to improve analysis in ChIP-seq experiments.

Yang Y, Fear J, Hu J, Haecker I, Zhou L, Renne R, Bloom D, McIntyre LM.

Comput Struct Biotechnol J. 2014 Jan 31;9:e201401002. doi: 10.5936/csbj.201401002. eCollection 2014.


Toxicity of lunar dust assessed in inhalation-exposed rats.

Lam CW, Scully RR, Zhang Y, Renne RA, Hunter RL, McCluskey RA, Chen BT, Castranova V, Driscoll KE, Gardner DE, McClellan RO, Cooper BL, McKay DS, Marshall L, James JT.

Inhal Toxicol. 2013 Oct;25(12):661-78. doi: 10.3109/08958378.2013.833660.


Kaposi's sarcoma-associated herpesvirus microRNA single-nucleotide polymorphisms identified in clinical samples can affect microRNA processing, level of expression, and silencing activity.

Han SJ, Marshall V, Barsov E, Quiñones O, Ray A, Labo N, Trivett M, Ott D, Renne R, Whitby D.

J Virol. 2013 Nov;87(22):12237-48. doi: 10.1128/JVI.01202-13. Epub 2013 Sep 4.


Persistent human herpesvirus-6 infection in patients with an inherited form of the virus.

Pantry SN, Medveczky MM, Arbuckle JH, Luka J, Montoya JG, Hu J, Renne R, Peterson D, Pritchett JC, Ablashi DV, Medveczky PG.

J Med Virol. 2013 Nov;85(11):1940-6. doi: 10.1002/jmv.23685. Epub 2013 Jul 25.


γ-Herpesvirus-encoded miRNAs and their roles in viral biology and pathogenesis.

Zhu Y, Haecker I, Yang Y, Gao SJ, Renne R.

Curr Opin Virol. 2013 Jun;3(3):266-75. doi: 10.1016/j.coviro.2013.05.013. Epub 2013 Jun 3. Review.


Epigenetic diversity of Kaposi's sarcoma-associated herpesvirus.

Darst RP, Haecker I, Pardo CE, Renne R, Kladde MP.

Nucleic Acids Res. 2013 Mar 1;41(5):2993-3009. doi: 10.1093/nar/gkt033. Epub 2013 Jan 29.


Ago HITS-CLIP expands understanding of Kaposi's sarcoma-associated herpesvirus miRNA function in primary effusion lymphomas.

Haecker I, Gay LA, Yang Y, Hu J, Morse AM, McIntyre LM, Renne R.

PLoS Pathog. 2012;8(8):e1002884. doi: 10.1371/journal.ppat.1002884. Epub 2012 Aug 23. Erratum in: PLoS Pathog. 2013 Mar;9(3). doi: 10.1371/annotation/bb6f7450-8506-41c3-8519-020df8b382b9.


Biological characterization and next-generation genome sequencing of the unclassified Cotia virus SPAn232 (Poxviridae).

Afonso PP, Silva PM, Schnellrath LC, Jesus DM, Hu J, Yang Y, Renne R, Attias M, Condit RC, Moussatché N, Damaso CR.

J Virol. 2012 May;86(9):5039-54. doi: 10.1128/JVI.07162-11. Epub 2012 Feb 15.


Comparison of mouse strains and exposure conditions in acute cigarette smoke inhalation studies.

Tsuji H, Fujimoto H, Matsuura D, Nishino T, Lee KM, Renne R, Yoshimura H.

Inhal Toxicol. 2011 Aug;23(10):602-15. doi: 10.3109/08958378.2011.596851.


A Kaposi's sarcoma-associated herpesvirus-encoded ortholog of microRNA miR-155 induces human splenic B-cell expansion in NOD/LtSz-scid IL2Rγnull mice.

Boss IW, Nadeau PE, Abbott JR, Yang Y, Mergia A, Renne R.

J Virol. 2011 Oct;85(19):9877-86. doi: 10.1128/JVI.05558-11. Epub 2011 Aug 3.


Viral miRNAs and immune evasion.

Boss IW, Renne R.

Biochim Biophys Acta. 2011 Nov-Dec;1809(11-12):708-14. doi: 10.1016/j.bbagrm.2011.06.012. Epub 2011 Jul 5. Review.


Viral miRNAs.

Plaisance-Bonstaff K, Renne R.

Methods Mol Biol. 2011;721:43-66. doi: 10.1007/978-1-61779-037-9_3. Review.


Maintenance and replication during latency.

Lieberman PM, Hu J, Renne R.

In: Arvin A, Campadelli-Fiume G, Mocarski E, Moore PS, Roizman B, Whitley R, Yamanishi K, editors. Human Herpesviruses: Biology, Therapy, and Immunoprophylaxis. Cambridge: Cambridge University Press; 2007. Chapter 24.


Comparison of the physiological and morphological effects of cigarette smoke exposure at comparable weekly doses on Sprague-Dawley rats.

Tsuji H, Lee KM, Yoshino K, Nakamura H, Lulham G, Renne R, Yoshimura H.

Inhal Toxicol. 2011 Jan;23(1):17-32. doi: 10.3109/08958378.2010.537396.


Viral miRNAs: tools for immune evasion.

Boss IW, Renne R.

Curr Opin Microbiol. 2010 Aug;13(4):540-5. doi: 10.1016/j.mib.2010.05.017. Epub 2010 Jun 25. Review.


Proliferative and nonproliferative lesions of the rat and mouse respiratory tract.

Renne R, Brix A, Harkema J, Herbert R, Kittel B, Lewis D, March T, Nagano K, Pino M, Rittinghausen S, Rosenbruch M, Tellier P, Wohrmann T.

Toxicol Pathol. 2009 Dec;37(7 Suppl):5S-73S. doi: 10.1177/0192623309353423.


Upregulation of xCT by KSHV-encoded microRNAs facilitates KSHV dissemination and persistence in an environment of oxidative stress.

Qin Z, Freitas E, Sullivan R, Mohan S, Bacelieri R, Branch D, Romano M, Kearney P, Oates J, Plaisance K, Renne R, Kaleeba J, Parsons C.

PLoS Pathog. 2010 Jan 29;6(1):e1000742. doi: 10.1371/journal.ppat.1000742.

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