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Items: 27

1.

Thermoresponsive Protein-Engineered Coiled-Coil Hydrogel for Sustained Small Molecule Release.

Hill LK, Meleties M, Katyal P, Xie X, Delgado-Fukushima E, Jihad T, Liu CF, O'Neill S, Tu RS, Renfrew PD, Bonneau R, Wadghiri YZ, Montclare JK.

Biomacromolecules. 2019 Sep 9;20(9):3340-3351. doi: 10.1021/acs.biomac.9b00107. Epub 2019 Aug 19.

PMID:
31356057
2.

An adaptive geometric search algorithm for macromolecular scaffold selection.

Jiang T, Renfrew PD, Drew K, Youngs N, Butterfoss GL, Bonneau R, Shasha DN.

Protein Eng Des Sel. 2018 Sep 1;31(9):345-354. doi: 10.1093/protein/gzy028.

3.

Rotamer Libraries for the High-Resolution Design of β-Amino Acid Foldamers.

Watkins AM, Craven TW, Renfrew PD, Arora PS, Bonneau R.

Structure. 2017 Nov 7;25(11):1771-1780.e3. doi: 10.1016/j.str.2017.09.005. Epub 2017 Oct 12.

4.

Impact of phenylalanines outside the dimer interface on phosphotriesterase stability and function.

Olsen AJ, Halvorsen LA, Yang CY, Barak Ventura R, Yin L, Renfrew PD, Bonneau R, Montclare JK.

Mol Biosyst. 2017 Sep 26;13(10):2092-2106. doi: 10.1039/c7mb00196g.

PMID:
28817149
5.

Efficient Dual siRNA and Drug Delivery Using Engineered Lipoproteoplexes.

Liu CF, Chen R, Frezzo JA, Katyal P, Hill LK, Yin L, Srivastava N, More HT, Renfrew PD, Bonneau R, Montclare JK.

Biomacromolecules. 2017 Sep 11;18(9):2688-2698. doi: 10.1021/acs.biomac.7b00203. Epub 2017 Aug 4.

PMID:
28686014
6.

The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design.

Alford RF, Leaver-Fay A, Jeliazkov JR, O'Meara MJ, DiMaio FP, Park H, Shapovalov MV, Renfrew PD, Mulligan VK, Kappel K, Labonte JW, Pacella MS, Bonneau R, Bradley P, Dunbrack RL Jr, Das R, Baker D, Kuhlman B, Kortemme T, Gray JJ.

J Chem Theory Comput. 2017 Jun 13;13(6):3031-3048. doi: 10.1021/acs.jctc.7b00125. Epub 2017 May 12.

7.

Improved stability and half-life of fluorinated phosphotriesterase using Rosetta.

Yang CY, Renfrew PD, Olsen AJ, Zhang M, Yuvienco C, Bonneau R, Montclare JK.

Chembiochem. 2014 Aug 18;15(12):1761-4. doi: 10.1002/cbic.201402062. Epub 2014 Jul 25.

PMID:
25066940
8.

Engineered coiled-coil protein microfibers.

Hume J, Sun J, Jacquet R, Renfrew PD, Martin JA, Bonneau R, Gilchrist ML, Montclare JK.

Biomacromolecules. 2014 Oct 13;15(10):3503-10. doi: 10.1021/bm5004948. Epub 2014 Oct 2.

PMID:
24941228
9.

Conformational preferences of peptide-peptoid hybrid oligomers.

Butterfoss GL, Drew K, Renfrew PD, Kirshenbaum K, Bonneau R.

Biopolymers. 2014 Sep;102(5):369-78. doi: 10.1002/bip.22516.

PMID:
24919990
10.

A rotamer library to enable modeling and design of peptoid foldamers.

Renfrew PD, Craven TW, Butterfoss GL, Kirshenbaum K, Bonneau R.

J Am Chem Soc. 2014 Jun 18;136(24):8772-82. doi: 10.1021/ja503776z. Epub 2014 Jun 9.

11.

Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design.

Drew K, Renfrew PD, Craven TW, Butterfoss GL, Chou FC, Lyskov S, Bullock BN, Watkins A, Labonte JW, Pacella M, Kilambi KP, Leaver-Fay A, Kuhlman B, Gray JJ, Bradley P, Kirshenbaum K, Arora PS, Das R, Bonneau R.

PLoS One. 2013 Jul 15;8(7):e67051. doi: 10.1371/journal.pone.0067051. Print 2013.

12.

Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE).

Lyskov S, Chou FC, Conchúir SÓ, Der BS, Drew K, Kuroda D, Xu J, Weitzner BD, Renfrew PD, Sripakdeevong P, Borgo B, Havranek JJ, Kuhlman B, Kortemme T, Bonneau R, Gray JJ, Das R.

PLoS One. 2013 May 22;8(5):e63906. doi: 10.1371/journal.pone.0063906. Print 2013.

13.

Biliary stent therapy for dominant strictures in patients affected by primary sclerosing cholangitis.

Abu-Wasel B, Keough V, Renfrew PD, Molinari M.

Pathobiology. 2013;80(4):182-93. doi: 10.1159/000347057. Epub 2013 May 6. Review.

14.

Are there geographical disparities in access to liver transplantation in Atlantic Canada?

Renfrew PD, Molinari M.

Can J Gastroenterol. 2012 Oct;26(10):705-10.

15.

Incorporation of noncanonical amino acids into Rosetta and use in computational protein-peptide interface design.

Renfrew PD, Choi EJ, Bonneau R, Kuhlman B.

PLoS One. 2012;7(3):e32637. doi: 10.1371/journal.pone.0032637. Epub 2012 Mar 14.

16.

Meta-analysis of phase III randomized trials of molecular targeted therapies for advanced pancreatic cancer.

Eltawil KM, Renfrew PD, Molinari M.

HPB (Oxford). 2012 Apr;14(4):260-8. doi: 10.1111/j.1477-2574.2012.00441.x. Epub 2012 Feb 26.

17.

Rural residency and the risk of mortality while waiting for liver transplantation.

Renfrew PD, Molinari M.

Clin Transplant. 2012 Jul-Aug;26(4):600-7. doi: 10.1111/j.1399-0012.2011.01576.x. Epub 2011 Dec 28.

PMID:
22211831
18.

Oligo(N-alkoxy glycines): trans substantiating peptoid conformations.

Jordan PA, Paul B, Butterfoss GL, Renfrew PD, Bonneau R, Kirshenbaum K.

Biopolymers. 2011;96(5):617-26.

PMID:
22180909
19.

The 2010 Rosetta developers meeting: macromolecular prediction and design meets reproducible publishing.

Renfrew PD, Campbell G, Strauss CE, Bonneau R.

PLoS One. 2011;6(8):e22431. doi: 10.1371/journal.pone.0022431. Epub 2011 Aug 31. No abstract available.

20.

The Model for End-stage Liver Disease accurately predicts 90-day liver transplant wait-list mortality in Atlantic Canada.

Renfrew PD, Quan H, Doig CJ, Dixon E, Molinari M.

Can J Gastroenterol. 2011 Jul;25(7):359-64.

21.

Peptoid atropisomers.

Paul B, Butterfoss GL, Boswell MG, Renfrew PD, Yeung FG, Shah NH, Wolf C, Bonneau R, Kirshenbaum K.

J Am Chem Soc. 2011 Jul 20;133(28):10910-9. doi: 10.1021/ja2028684. Epub 2011 Jun 22.

PMID:
21634437
22.

Advances in diagnosis, treatment and palliation of pancreatic carcinoma: 1990-2010.

Sharma C, Eltawil KM, Renfrew PD, Walsh MJ, Molinari M.

World J Gastroenterol. 2011 Feb 21;17(7):867-97. doi: 10.3748/wjg.v17.i7.867. Review.

23.

Analytical review of diagnosis and treatment strategies for dominant bile duct strictures in patients with primary sclerosing cholangitis.

Aljiffry M, Renfrew PD, Walsh MJ, Laryea M, Molinari M.

HPB (Oxford). 2011 Feb;13(2):79-90. doi: 10.1111/j.1477-2574.2010.00268.x. Review.

24.

ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules.

Leaver-Fay A, Tyka M, Lewis SM, Lange OF, Thompson J, Jacak R, Kaufman K, Renfrew PD, Smith CA, Sheffler W, Davis IW, Cooper S, Treuille A, Mandell DJ, Richter F, Ban YE, Fleishman SJ, Corn JE, Kim DE, Lyskov S, Berrondo M, Mentzer S, Popović Z, Havranek JJ, Karanicolas J, Das R, Meiler J, Kortemme T, Gray JJ, Kuhlman B, Baker D, Bradley P.

Methods Enzymol. 2011;487:545-74. doi: 10.1016/B978-0-12-381270-4.00019-6.

25.

Clinical epidemiological analysis of the mortality rate of liver transplant candidates living in rural areas.

Molinari M, Renfrew PD, Petrie NM, De Coutere S, Abdolell M.

Transpl Int. 2011 Mar;24(3):292-9. doi: 10.1111/j.1432-2277.2010.01200.x. Epub 2010 Dec 10.

26.

A preliminary survey of the peptoid folding landscape.

Butterfoss GL, Renfrew PD, Kuhlman B, Kirshenbaum K, Bonneau R.

J Am Chem Soc. 2009 Nov 25;131(46):16798-807. doi: 10.1021/ja905267k.

PMID:
19919145
27.

Using quantum mechanics to improve estimates of amino acid side chain rotamer energies.

Renfrew PD, Butterfoss GL, Kuhlman B.

Proteins. 2008 Jun;71(4):1637-46.

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