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Items: 1 to 50 of 78

1.

Aneuploid acute myeloid leukemia exhibits a signature of genomic alterations in the cell cycle and protein degradation machinery.

Simonetti G, Padella A, do Valle IF, Fontana MC, Fonzi E, Bruno S, Baldazzi C, Guadagnuolo V, Manfrini M, Ferrari A, Paolini S, Papayannidis C, Marconi G, Franchini E, Zuffa E, Laginestra MA, Zanotti F, Astolfi A, Iacobucci I, Bernardi S, Sazzini M, Ficarra E, Hernandez JM, Vandenberghe P, Cools J, Bullinger L, Ottaviani E, Testoni N, Cavo M, Haferlach T, Castellani G, Remondini D, Martinelli G.

Cancer. 2019 Mar 1;125(5):712-725. doi: 10.1002/cncr.31837. Epub 2018 Nov 27.

PMID:
30480765
2.

BK channel overexpression on plasma membrane of fibroblasts from Hutchinson-Gilford progeria syndrome.

Zironi I, Gavoçi E, Lattanzi G, Virelli A, Amorini F, Remondini D, Castellani G.

Aging (Albany NY). 2018 Nov 6;10(11):3148-3160. doi: 10.18632/aging.101621.

3.

Network integration of multi-tumour omics data suggests novel targeting strategies.

do Valle ÍF, Menichetti G, Simonetti G, Bruno S, Zironi I, Durso DF, Mombach JCM, Martinelli G, Castellani G, Remondini D.

Nat Commun. 2018 Oct 30;9(1):4514. doi: 10.1038/s41467-018-06992-7.

4.

Statistical modelling of CG interdistance across multiple organisms.

A M, Valle I FD, G C, D R.

BMC Bioinformatics. 2018 Oct 15;19(Suppl 10):355. doi: 10.1186/s12859-018-2303-2.

5.

Quantifying the contribution of four resistance mechanisms to ciprofloxacin MIC in Escherichia coli: a systematic review.

van der Putten BCL, Remondini D, Pasquini G, Janes VA, Matamoros S, Schultsz C.

J Antimicrob Chemother. 2019 Feb 1;74(2):298-310. doi: 10.1093/jac/dky417.

PMID:
30357339
6.

Altered modulation of lamin A/C-HDAC2 interaction and p21 expression during oxidative stress response in HGPS.

Mattioli E, Andrenacci D, Garofalo C, Prencipe S, Scotlandi K, Remondini D, Gentilini D, Di Blasio AM, Valente S, Scarano E, Cicchilitti L, Piaggio G, Mai A, Lattanzi G.

Aging Cell. 2018 Oct;17(5):e12824. doi: 10.1111/acel.12824. Epub 2018 Aug 15. Erratum in: Aging Cell. 2018 Dec;17(6):e12885.

7.

Toward the Authentication of European Sea Bass Origin through a Combination of Biometric Measurements and Multiple Analytical Techniques.

Farabegoli F, Pirini M, Rotolo M, Silvi M, Testi S, Ghidini S, Zanardi E, Remondini D, Bonaldo A, Parma L, Badiani A.

J Agric Food Chem. 2018 Jul 5;66(26):6822-6831. doi: 10.1021/acs.jafc.8b00505. Epub 2018 Jun 25.

PMID:
29883538
8.

Molecular Aging of Human Liver: An Epigenetic/Transcriptomic Signature.

Bacalini MG, Franceschi C, Gentilini D, Ravaioli F, Zhou X, Remondini D, Pirazzini C, Giuliani C, Marasco E, Gensous N, Di Blasio AM, Ellis E, Gramignoli R, Castellani G, Capri M, Strom S, Nardini C, Cescon M, Grazi GL, Garagnani P.

J Gerontol A Biol Sci Med Sci. 2019 Jan 1;74(1):1-8. doi: 10.1093/gerona/gly048.

PMID:
29554203
9.

Brain functional connectivity in sleep-related hypermotor epilepsy.

Evangelisti S, Testa C, Ferri L, Gramegna LL, Manners DN, Rizzo G, Remondini D, Castellani G, Naldi I, Bisulli F, Tonon C, Tinuper P, Lodi R.

Neuroimage Clin. 2017 Dec 6;17:873-881. doi: 10.1016/j.nicl.2017.12.002. eCollection 2018.

10.

Integrated Molecular Characterization of Gastrointestinal Stromal Tumors (GIST) Harboring the Rare D842V Mutation in PDGFRA Gene.

Indio V, Astolfi A, Tarantino G, Urbini M, Patterson J, Nannini M, Saponara M, Gatto L, Santini D, do Valle IF, Castellani G, Remondini D, Fiorentino M, von Mehren M, Brandi G, Biasco G, Heinrich MC, Pantaleo MA.

Int J Mol Sci. 2018 Mar 4;19(3). pii: E732. doi: 10.3390/ijms19030732.

11.

RUNX2 expression in thyroid and breast cancer requires the cooperation of three non-redundant enhancers under the control of BRD4 and c-JUN.

Sancisi V, Manzotti G, Gugnoni M, Rossi T, Gandolfi G, Gobbi G, Torricelli F, Catellani F, Faria do Valle I, Remondini D, Castellani G, Ragazzi M, Piana S, Ciarrocchi A.

Nucleic Acids Res. 2017 Nov 2;45(19):11249-11267. doi: 10.1093/nar/gkx802.

12.

Identification of a T cell gene expression clock obtained by exploiting a MZ twin design.

Remondini D, Intrator N, Sala C, Pierini M, Garagnani P, Zironi I, Franceschi C, Salvioli S, Castellani G.

Sci Rep. 2017 Jul 20;7(1):6005. doi: 10.1038/s41598-017-05694-2.

13.

Optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data.

do Valle ÍF, Giampieri E, Simonetti G, Padella A, Manfrini M, Ferrari A, Papayannidis C, Zironi I, Garonzi M, Bernardi S, Delledonne M, Martinelli G, Remondini D, Castellani G.

BMC Bioinformatics. 2016 Nov 8;17(Suppl 12):341. doi: 10.1186/s12859-016-1190-7.

14.

Identification of miR-31-5p, miR-141-3p, miR-200c-3p, and GLT1 as human liver aging markers sensitive to donor-recipient age-mismatch in transplants.

Capri M, Olivieri F, Lanzarini C, Remondini D, Borelli V, Lazzarini R, Graciotti L, Albertini MC, Bellavista E, Santoro A, Biondi F, Tagliafico E, Tenedini E, Morsiani C, Pizza G, Vasuri F, D'Errico A, Dazzi A, Pellegrini S, Magenta A, D'Agostino M, Capogrossi MC, Cescon M, Rippo MR, Procopio AD, Franceschi C, Grazi GL.

Aging Cell. 2017 Apr;16(2):262-272. doi: 10.1111/acel.12549. Epub 2016 Dec 20.

15.

Network diffusion-based analysis of high-throughput data for the detection of differentially enriched modules.

Bersanelli M, Mosca E, Remondini D, Castellani G, Milanesi L.

Sci Rep. 2016 Oct 12;6:34841. doi: 10.1038/srep34841.

16.

Network measures for protein folding state discrimination.

Menichetti G, Fariselli P, Remondini D.

Sci Rep. 2016 Jul 28;6:30367. doi: 10.1038/srep30367.

17.

Entropy-Based Network Representation of the Individual Metabolic Phenotype.

Saccenti E, Menichetti G, Ghini V, Remondini D, Tenori L, Luchinat C.

J Proteome Res. 2016 Sep 2;15(9):3298-307. doi: 10.1021/acs.jproteome.6b00454. Epub 2016 Aug 1.

PMID:
27436276
18.

Quality Matters: Systematic Analysis of Endpoints Related to "Cellular Life" in Vitro Data of Radiofrequency Electromagnetic Field Exposure.

Simkó M, Remondini D, Zeni O, Scarfi MR.

Int J Environ Res Public Health. 2016 Jul 12;13(7). pii: E701. doi: 10.3390/ijerph13070701. Review.

19.

Erratum: A meta-analysis on age-associated changes in blood DNA methylation: results from an original analysis pipeline for Infinium 450k data.

Bacalini MG, Boattini A, Gentilini D, Giampieri E, Pirazzini C, Giuliani C, Fontanesi E, Remondini D, Capri M, Del Rio A, Luiselli D, Vitale G, Mari D, Castellani G, Di Blasio AM, Salvioli S, Franceschi C, Garagnani P.

Aging (Albany NY). 2016 Apr;8(4):831. doi: 10.18632/aging.100915. No abstract available.

20.

Opposite activation of the Hedgehog pathway in CD138+ plasma cells and CD138-CD19+ B cells identifies two subgroups of patients with multiple myeloma and different prognosis.

Martello M, Remondini D, Borsi E, Santacroce B, Procacci M, Pezzi A, Dico FA, Martinelli G, Zamagni E, Tacchetti P, Pantani L, Testoni N, Marzocchi G, Rocchi S, Zannetti BA, Mancuso K, Cavo M, Terragna C.

Leukemia. 2016 Sep;30(9):1869-76. doi: 10.1038/leu.2016.77. Epub 2016 Apr 14.

PMID:
27074969
21.

Characterization of DNA methylation as a function of biological complexity via dinucleotide inter-distances.

Paci G, Cristadoro G, Monti B, Lenci M, Degli Esposti M, Castellani GC, Remondini D.

Philos Trans A Math Phys Eng Sci. 2016 Mar 13;374(2063). pii: 20150227. doi: 10.1098/rsta.2015.0227.

PMID:
26857665
22.

Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data.

Sala C, Vitali S, Giampieri E, do Valle ÌF, Remondini D, Garagnani P, Bersanelli M, Mosca E, Milanesi L, Castellani G.

BMC Bioinformatics. 2016 Jan 20;17 Suppl 2:16. doi: 10.1186/s12859-015-0858-8.

23.

Methods for the integration of multi-omics data: mathematical aspects.

Bersanelli M, Mosca E, Remondini D, Giampieri E, Sala C, Castellani G, Milanesi L.

BMC Bioinformatics. 2016 Jan 20;17 Suppl 2:15. doi: 10.1186/s12859-015-0857-9.

24.

The genetic and genomic background of multiple myeloma patients achieving complete response after induction therapy with bortezomib, thalidomide and dexamethasone (VTD).

Terragna C, Remondini D, Martello M, Zamagni E, Pantani L, Patriarca F, Pezzi A, Levi G, Offidani M, Proserpio I, De Sabbata G, Tacchetti P, Cangialosi C, Ciambelli F, Viganò CV, Dico FA, Santacroce B, Borsi E, Brioli A, Marzocchi G, Castellani G, Martinelli G, Palumbo A, Cavo M.

Oncotarget. 2016 Mar 1;7(9):9666-79. doi: 10.18632/oncotarget.5718.

25.

Systems medicine of inflammaging.

Castellani GC, Menichetti G, Garagnani P, Giulia Bacalini M, Pirazzini C, Franceschi C, Collino S, Sala C, Remondini D, Giampieri E, Mosca E, Bersanelli M, Vitali S, Valle IF, Liò P, Milanesi L.

Brief Bioinform. 2016 May;17(3):527-40. doi: 10.1093/bib/bbv062. Epub 2015 Aug 24.

26.

Statistical strategies and stochastic predictive models for the MARK-AGE data.

Giampieri E, Remondini D, Bacalini MG, Garagnani P, Pirazzini C, Yani SL, Giuliani C, Menichetti G, Zironi I, Sala C, Capri M, Franceschi C, Bürkle A, Castellani G.

Mech Ageing Dev. 2015 Nov;151:45-53. doi: 10.1016/j.mad.2015.07.001. Epub 2015 Jul 21.

27.

Active Degradation Explains the Distribution of Nuclear Proteins during Cellular Senescence.

Giampieri E, De Cecco M, Remondini D, Sedivy J, Castellani G.

PLoS One. 2015 Jun 26;10(6):e0118442. doi: 10.1371/journal.pone.0118442. eCollection 2015.

28.

Multiscale characterization of ageing and cancer progression by a novel network entropy measure.

Menichetti G, Bianconi G, Castellani G, Giampieri E, Remondini D.

Mol Biosyst. 2015 Jul;11(7):1824-31. doi: 10.1039/c5mb00143a.

PMID:
25909281
29.

A meta-analysis on age-associated changes in blood DNA methylation: results from an original analysis pipeline for Infinium 450k data.

Bacalini MG, Boattini A, Gentilini D, Giampieri E, Pirazzini C, Giuliani C, Fontanesi E, Remondini D, Capri M, Del Rio A, Luiselli D, Vitale G, Mari D, Castellani G, Di Blasio AM, Salvioli S, Franceschi C, Garagnani P.

Aging (Albany NY). 2015 Feb;7(2):97-109. Erratum in: Aging (Albany NY). 2016 Apr;8(4):831.

30.

Identification of a DNA methylation signature in blood cells from persons with Down Syndrome.

Bacalini MG, Gentilini D, Boattini A, Giampieri E, Pirazzini C, Giuliani C, Fontanesi E, Scurti M, Remondini D, Capri M, Cocchi G, Ghezzo A, Del Rio A, Luiselli D, Vitale G, Mari D, Castellani G, Fraga M, Di Blasio AM, Salvioli S, Franceschi C, Garagnani P.

Aging (Albany NY). 2015 Feb;7(2):82-96.

31.

Correlations between weights and overlap in ensembles of weighted multiplex networks.

Menichetti G, Remondini D, Bianconi G.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Dec;90(6):062817. Epub 2014 Dec 31.

PMID:
25615157
32.

Lifelong maintenance of composition, function and cellular/subcellular distribution of proteasomes in human liver.

Bellavista E, Martucci M, Vasuri F, Santoro A, Mishto M, Kloss A, Capizzi E, Degiovanni A, Lanzarini C, Remondini D, Dazzi A, Pellegrini S, Cescon M, Capri M, Salvioli S, D'Errico-Grigioni A, Dahlmann B, Grazi GL, Franceschi C.

Mech Ageing Dev. 2014 Nov-Dec;141-142:26-34. doi: 10.1016/j.mad.2014.09.003. Epub 2014 Oct 1.

33.

Systems biology and brain activity in neuronal pathways by smart device and advanced signal processing.

Castellani G, Intrator N, Remondini D.

Front Genet. 2014 Aug 26;5:253. doi: 10.3389/fgene.2014.00253. eCollection 2014.

34.

Weighted multiplex networks.

Menichetti G, Remondini D, Panzarasa P, Mondragón RJ, Bianconi G.

PLoS One. 2014 Jun 6;9(6):e97857. doi: 10.1371/journal.pone.0097857. eCollection 2014.

35.

Cow's milk allergy (CMA) in children: identification of allergologic tests predictive of food allergy.

Bellini F, Ricci G, Remondini D, Pession A.

Eur Ann Allergy Clin Immunol. 2014 May;46(3):100-5.

PMID:
24853567
36.

Changes in IgG and total plasma protein glycomes in acute systemic inflammation.

Novokmet M, Lukić E, Vučković F, Ðurić Ž, Keser T, Rajšl K, Remondini D, Castellani G, Gašparović H, Gornik O, Lauc G.

Sci Rep. 2014 Mar 11;4:4347. doi: 10.1038/srep04347.

37.

Entropy of a network ensemble: definitions and applications to genomic data.

Menichetti G, Remondini D.

Theor Biol Forum. 2014;107(1-2):77-87.

PMID:
25936214
38.

ELF magnetic fields tuned to ion parametric resonance conditions do not affect TEA-sensitive voltage-dependent outward K(+) currents in a human neural cell line.

Gavoçi E, Zironi I, Remondini D, Virelli A, Castellani G, Del Re B, Giorgi G, Aicardi G, Bersani F.

Bioelectromagnetics. 2013 Dec;34(8):579-88. doi: 10.1002/bem.21807. Epub 2013 Jul 30.

PMID:
23900932
39.

The posterior iliac crest outperforms the anterior iliac crest when obtaining mesenchymal stem cells from bone marrow.

Pierini M, Di Bella C, Dozza B, Frisoni T, Martella E, Bellotti C, Remondini D, Lucarelli E, Giannini S, Donati D.

J Bone Joint Surg Am. 2013 Jun 19;95(12):1101-7. doi: 10.2106/JBJS.L.00429.

PMID:
23783207
40.

Correlation between eight-gene expression profiling and response to therapy of newly diagnosed multiple myeloma patients treated with thalidomide-dexamethasone incorporated into double autologous transplantation.

Terragna C, Renzulli M, Remondini D, Tagliafico E, Di Raimondo F, Patriarca F, Martinelli G, Roncaglia E, Masini L, Tosi P, Zamagni E, Tacchetti P, Ledda A, Brioli A, Angelucci E, Testoni N, Marzocchi G, Galieni P, Gozzetti A, Martello M, Dico F, Mancuso K, Cavo M.

Ann Hematol. 2013 Sep;92(9):1271-80. doi: 10.1007/s00277-013-1757-6. Epub 2013 May 10.

PMID:
23660628
41.

Measures of centrality based on the spectrum of the Laplacian.

Pauls SD, Remondini D.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Jun;85(6 Pt 2):066127. Epub 2012 Jun 20.

PMID:
23005182
42.

Role of epigenetics in human aging and longevity: genome-wide DNA methylation profile in centenarians and centenarians' offspring.

Gentilini D, Mari D, Castaldi D, Remondini D, Ogliari G, Ostan R, Bucci L, Sirchia SM, Tabano S, Cavagnini F, Monti D, Franceschi C, Di Blasio AM, Vitale G.

Age (Dordr). 2013 Oct;35(5):1961-73. doi: 10.1007/s11357-012-9463-1. Epub 2012 Aug 25.

43.

Bistability in the chemical master equation for dual phosphorylation cycles.

Bazzani A, Castellani GC, Giampieri E, Remondini D, Cooper LN.

J Chem Phys. 2012 Jun 21;136(23):235102. doi: 10.1063/1.4725180.

PMID:
22779621
44.

Efficient isolation and enrichment of mesenchymal stem cells from bone marrow.

Pierini M, Dozza B, Lucarelli E, Tazzari PL, Ricci F, Remondini D, di Bella C, Giannini S, Donati D.

Cytotherapy. 2012 Jul;14(6):686-93. doi: 10.3109/14653249.2012.677821. Epub 2012 May 10.

PMID:
22574721
45.

Survival features of EBV-stabilized cells from centenarians: morpho-functional and transcriptomic analyses.

Matarrese P, Tinari A, Ascione B, Gambardella L, Remondini D, Salvioli S, Tenedini E, Tagliafico E, Franceschi C, Malorni W.

Age (Dordr). 2012 Dec;34(6):1341-59. doi: 10.1007/s11357-011-9307-4. Epub 2011 Sep 9.

46.

Stochastic analysis of a miRNA-protein toggle switch.

Giampieri E, Remondini D, de Oliveira L, Castellani G, Lió P.

Mol Biosyst. 2011 Oct;7(10):2796-803. doi: 10.1039/c1mb05086a. Epub 2011 Jun 30.

PMID:
21717010
47.

Pooled genome-wide analysis to identify novel risk loci for pediatric allergic asthma.

Ricci G, Astolfi A, Remondini D, Cipriani F, Formica S, Dondi A, Pession A.

PLoS One. 2011 Feb 16;6(2):e16912. doi: 10.1371/journal.pone.0016912.

48.

Molecular remodeling of potassium channels in fibroblasts from centenarians: a marker of longevity?

Zironi I, Gaibani P, Remondini D, Salvioli S, Altilia S, Pierini M, Aicardi G, Verondini E, Milanesi L, Bersani F, Gravina S, Roninson IB, Franceschi C, Castellani G.

Mech Ageing Dev. 2010 Nov-Dec;131(11-12):674-81. doi: 10.1016/j.mad.2010.09.004. Epub 2010 Sep 19.

PMID:
20858515
49.

Network, degeneracy and bow tie. Integrating paradigms and architectures to grasp the complexity of the immune system.

Tieri P, Grignolio A, Zaikin A, Mishto M, Remondini D, Castellani GC, Franceschi C.

Theor Biol Med Model. 2010 Aug 11;7:32. doi: 10.1186/1742-4682-7-32.

50.

Complex patterns of gene expression in human T cells during in vivo aging.

Remondini D, Salvioli S, Francesconi M, Pierini M, Mazzatti DJ, Powell JR, Zironi I, Bersani F, Castellani G, Franceschi C.

Mol Biosyst. 2010 Oct;6(10):1983-92. doi: 10.1039/c004635c. Epub 2010 Aug 5.

PMID:
20686723

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