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[Digital Image Processing and Deep Neural Networks in Ophthalmology - Current Trends].

Bartschat A, Allgeier S, Bohn S, Scherr T, Blessing D, Reichert KM, Reischl M, Stachs O, Koehler B, Mikut R.

Klin Monbl Augenheilkd. 2019 Dec;236(12):1399-1406. doi: 10.1055/a-1008-9400. Epub 2019 Oct 31. German.


Machine Learning Methods for Automated Quantification of Ventricular Dimensions.

Schutera M, Just S, Gierten J, Mikut R, Reischl M, Pylatiuk C.

Zebrafish. 2019 Dec;16(6):542-545. doi: 10.1089/zeb.2019.1754. Epub 2019 Oct 3.


Comparison of PD-L1 expression between paired cytologic and histologic specimens from non-small cell lung cancer patients.

Kuempers C, van der Linde LIS, Reischl M, Vogel W, Stellmacher F, Reck M, Heigener D, Rabe KF, Kirfel J, Perner S, Welker L.

Virchows Arch. 2019 Aug 7. doi: 10.1007/s00428-019-02632-7. [Epub ahead of print]


mTORC1 and PKB/Akt control the muscle response to denervation by regulating autophagy and HDAC4.

Castets P, Rion N, Théodore M, Falcetta D, Lin S, Reischl M, Wild F, Guérard L, Eickhorst C, Brockhoff M, Guridi M, Ibebunjo C, Cruz J, Sinnreich M, Rudolf R, Glass DJ, Rüegg MA.

Nat Commun. 2019 Jul 18;10(1):3187. doi: 10.1038/s41467-019-11227-4.


Diffusive Steel Scrap Melting in Carbon-Saturated Hot Metal-Phenomenological Investigation at the Solid⁻Liquid Interface.

Penz FM, Schenk J, Ammer R, Klösch G, Pastucha K, Reischl M.

Materials (Basel). 2019 Apr 25;12(8). pii: E1358. doi: 10.3390/ma12081358.


DIY Automated Feeding and Motion Recording System for the Analysis of Fish Behavior.

Pylatiuk C, Zhao H, Gursky E, Reischl M, Peravali R, Foulkes N, Loosli F.

SLAS Technol. 2019 Aug;24(4):394-398. doi: 10.1177/2472630319841412. Epub 2019 Apr 23.


A Novel Optical Tissue Clearing Protocol for Mouse Skeletal Muscle to Visualize Endplates in Their Tissue Context.

Williams MPI, Rigon M, Straka T, Hörner SJ, Thiel M, Gretz N, Hafner M, Reischl M, Rudolf R.

Front Cell Neurosci. 2019 Feb 27;13:49. doi: 10.3389/fncel.2019.00049. eCollection 2019.


The HMG box transcription factors Sox1a and Sox1b specify a new class of glycinergic interneuron in the spinal cord of zebrafish embryos.

Gerber V, Yang L, Takamiya M, Ribes V, Gourain V, Peravali R, Stegmaier J, Mikut R, Reischl M, Ferg M, Rastegar S, Strähle U.

Development. 2019 Feb 20;146(4). pii: dev172510. doi: 10.1242/dev.172510.


Distinct amino acid motifs carrying multiple positive charges regulate membrane targeting of dysferlin and MG53.

Zhou L, Middel V, Reischl M, Strähle U, Nienhaus GU.

PLoS One. 2018 Aug 9;13(8):e0202052. doi: 10.1371/journal.pone.0202052. eCollection 2018.


A hybrid auricular control system: direct, simultaneous, and proportional myoelectric control of two degrees of freedom in prosthetic hands.

Schmalfuss L, Hahne J, Farina D, Hewitt M, Kogut A, Doneit W, Reischl M, Rupp R, Liebetanz D.

J Neural Eng. 2018 Oct;15(5):056028. doi: 10.1088/1741-2552/aad727. Epub 2018 Jul 31.


Cortical representation of auricular muscles in humans: A robot-controlled TMS mapping and fMRI study.

Meincke J, Hewitt M, Reischl M, Rupp R, Schmidt-Samoa C, Liebetanz D.

PLoS One. 2018 Jul 27;13(7):e0201277. doi: 10.1371/journal.pone.0201277. eCollection 2018.


Droplet microarray: miniaturized platform for rapid formation and high-throughput screening of embryoid bodies.

Tronser T, Demir K, Reischl M, Bastmeyer M, Levkin PA.

Lab Chip. 2018 Jul 24;18(15):2257-2269. doi: 10.1039/c8lc00450a.


Prognostic Value of the New Prostate Cancer International Society of Urological Pathology Grade Groups.

Offermann A, Hohensteiner S, Kuempers C, Ribbat-Idel J, Schneider F, Becker F, Hupe MC, Duensing S, Merseburger AS, Kirfel J, Reischl M, Lubczyk V, Kuefer R, Perner S.

Front Med (Lausanne). 2017 Sep 29;4:157. doi: 10.3389/fmed.2017.00157. eCollection 2017.


Evaluation of the Droplet-Microarray Platform for High-Throughput Screening of Suspension Cells.

Popova AA, Depew C, Permana KM, Trubitsyn A, Peravali R, Ordiano JÁ, Reischl M, Levkin PA.

SLAS Technol. 2017 Apr;22(2):163-175. doi: 10.1177/2211068216677204. Epub 2016 Nov 15.


The tumor-associated YB-1 protein: new player in the circadian control of cell proliferation.

Pagano C, di Martino O, Ruggiero G, Maria Guarino A, Mueller N, Siauciunaite R, Reischl M, Simon Foulkes N, Vallone D, Calabrò V.

Oncotarget. 2017 Jan 24;8(4):6193-6205. doi: 10.18632/oncotarget.14051.


A novel brain tumour model in zebrafish reveals the role of YAP activation in MAPK- and PI3K-induced malignant growth.

Mayrhofer M, Gourain V, Reischl M, Affaticati P, Jenett A, Joly JS, Benelli M, Demichelis F, Poliani PL, Sieger D, Mione M.

Dis Model Mech. 2017 Jan 1;10(1):15-28. doi: 10.1242/dmm.026500. Epub 2016 Nov 24.


A New Feedback-Based Method for Parameter Adaptation in Image Processing Routines.

Khan AU, Mikut R, Reischl M.

PLoS One. 2016 Oct 20;11(10):e0165180. doi: 10.1371/journal.pone.0165180. eCollection 2016.


Dysferlin-mediated phosphatidylserine sorting engages macrophages in sarcolemma repair.

Middel V, Zhou L, Takamiya M, Beil T, Shahid M, Roostalu U, Grabher C, Rastegar S, Reischl M, Nienhaus GU, Strähle U.

Nat Commun. 2016 Sep 19;7:12875. doi: 10.1038/ncomms12875.


Automated phenotype pattern recognition of zebrafish for high-throughput screening.

Schutera M, Dickmeis T, Mione M, Peravali R, Marcato D, Reischl M, Mikut R, Pylatiuk C.

Bioengineered. 2016 Jul 3;7(4):261-5. doi: 10.1080/21655979.2016.1197710.


Sympathetic innervation controls homeostasis of neuromuscular junctions in health and disease.

Khan MM, Lustrino D, Silveira WA, Wild F, Straka T, Issop Y, O'Connor E, Cox D, Reischl M, Marquardt T, Labeit D, Labeit S, Benoit E, Molgó J, Lochmüller H, Witzemann V, Kettelhut IC, Navegantes LC, Pozzan T, Rudolf R.

Proc Natl Acad Sci U S A. 2016 Jan 19;113(3):746-50. doi: 10.1073/pnas.1524272113. Epub 2016 Jan 5. Erratum in: Proc Natl Acad Sci U S A. 2017 Jun 19;:.


Small angle X-ray scattering as a high-throughput method to classify antimicrobial modes of action.

von Gundlach AR, Garamus VM, Gorniak T, Davies HA, Reischl M, Mikut R, Hilpert K, Rosenhahn A.

Biochim Biophys Acta. 2016 May;1858(5):918-25. doi: 10.1016/j.bbamem.2015.12.022. Epub 2015 Dec 28.


Improving short antimicrobial peptides despite elusive rules for activity.

Mikut R, Ruden S, Reischl M, Breitling F, Volkmer R, Hilpert K.

Biochim Biophys Acta. 2016 May;1858(5):1024-33. doi: 10.1016/j.bbamem.2015.12.013. Epub 2015 Dec 11.


Steer by ear: Myoelectric auricular control of powered wheelchairs for individuals with spinal cord injury.

Schmalfuß L, Rupp R, Tuga MR, Kogut A, Hewitt M, Meincke J, Klinker F, Duttenhoefer W, Eck U, Mikut R, Reischl M, Liebetanz D.

Restor Neurol Neurosci. 2015;34(1):79-95. doi: 10.3233/RNN-150579.


A Zebrafish Drug-Repurposing Screen Reveals sGC-Dependent and sGC-Independent Pro-Inflammatory Activities of Nitric Oxide.

Wittmann C, Reischl M, Shah AH, Kronfuss E, Mikut R, Liebel U, Grabher C.

PLoS One. 2015 Oct 7;10(10):e0137286. doi: 10.1371/journal.pone.0137286. eCollection 2015.


XPIWIT--an XML pipeline wrapper for the Insight Toolkit.

Bartschat A, Hübner E, Reischl M, Mikut R, Stegmaier J.

Bioinformatics. 2016 Jan 15;32(2):315-7. doi: 10.1093/bioinformatics/btv559. Epub 2015 Sep 28.


A Benchmark Data Set to Evaluate the Illumination Robustness of Image Processing Algorithms for Object Segmentation and Classification.

Khan AU, Mikut R, Reischl M.

PLoS One. 2015 Jul 20;10(7):e0131098. doi: 10.1371/journal.pone.0131098. eCollection 2015.


Clinical and molecular implications of MED15 in head and neck squamous cell carcinoma.

Shaikhibrahim Z, Offermann A, Halbach R, Vogel W, Braun M, Kristiansen G, Bootz F, Wenzel J, Mikut R, Lengerke C, Reischl M, Schröck A, Perner S.

Am J Pathol. 2015 Apr;185(4):1114-22. doi: 10.1016/j.ajpath.2014.12.010. Epub 2015 Mar 16.


Autophagy impairment in muscle induces neuromuscular junction degeneration and precocious aging.

Carnio S, LoVerso F, Baraibar MA, Longa E, Khan MM, Maffei M, Reischl M, Canepari M, Loefler S, Kern H, Blaauw B, Friguet B, Bottinelli R, Rudolf R, Sandri M.

Cell Rep. 2014 Sep 11;8(5):1509-21. doi: 10.1016/j.celrep.2014.07.061. Epub 2014 Aug 28.


Automatic zebrafish heartbeat detection and analysis for zebrafish embryos.

Pylatiuk C, Sanchez D, Mikut R, Alshut R, Reischl M, Hirth S, Rottbauer W, Just S.

Zebrafish. 2014 Aug;11(4):379-83. doi: 10.1089/zeb.2014.1002. Epub 2014 Jul 8.


Role of autophagy, SQSTM1, SH3GLB1, and TRIM63 in the turnover of nicotinic acetylcholine receptors.

Khan MM, Strack S, Wild F, Hanashima A, Gasch A, Brohm K, Reischl M, Carnio S, Labeit D, Sandri M, Labeit S, Rudolf R.

Autophagy. 2014 Jan;10(1):123-36. doi: 10.4161/auto.26841. Epub 2013 Nov 8.


Automated prior knowledge-based quantification of neuronal patterns in the spinal cord of zebrafish.

Stegmaier J, Shahid M, Takamiya M, Yang L, Rastegar S, Reischl M, Strähle U, Mikut R.

Bioinformatics. 2014 Mar 1;30(5):726-33. doi: 10.1093/bioinformatics/btt600. Epub 2013 Oct 17.


Concept of a Co-Adaptive Training Environment for Human-Machine Interfaces Based on EMG-Control.

Tuga MR, Rupp R, Liebetanz D, Mikut R, Reischl M.

Biomed Tech (Berl). 2013 Aug;58 Suppl 1. pii: /j/bmte.2013.58.issue-s1-P/bmt-2013-4388/bmt-2013-4388.xml. doi: 10.1515/bmt-2013-4388. Epub 2013 Sep 7. No abstract available.


Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos.

Armant O, März M, Schmidt R, Ferg M, Diotel N, Ertzer R, Bryne JC, Yang L, Baader I, Reischl M, Legradi J, Mikut R, Stemple D, van IJcken W, van der Sloot A, Lenhard B, Strähle U, Rastegar S.

Dev Biol. 2013 Aug 15;380(2):351-62. doi: 10.1016/j.ydbio.2013.05.006. Epub 2013 May 14.


Targeting Mycobacterium tuberculosis and other microbial pathogens using improved synthetic antibacterial peptides.

Ramón-García S, Mikut R, Ng C, Ruden S, Volkmer R, Reischl M, Hilpert K, Thompson CJ.

Antimicrob Agents Chemother. 2013 May;57(5):2295-303. doi: 10.1128/AAC.00175-13. Epub 2013 Mar 11.


Facilitating drug discovery: an automated high-content inflammation assay in zebrafish.

Wittmann C, Reischl M, Shah AH, Mikut R, Liebel U, Grabher C.

J Vis Exp. 2012 Jul 16;(65):e4203. doi: 10.3791/4203.


Participation of myosin Va and Pka type I in the regeneration of neuromuscular junctions.

Röder IV, Strack S, Reischl M, Dahley O, Khan MM, Kassel O, Zaccolo M, Rudolf R.

PLoS One. 2012;7(7):e40860. doi: 10.1371/journal.pone.0040860. Epub 2012 Jul 16.


Rapsyn mediates subsynaptic anchoring of PKA type I and stabilisation of acetylcholine receptor in vivo.

Choi KR, Berrera M, Reischl M, Strack S, Albrizio M, Röder IV, Wagner A, Petersen Y, Hafner M, Zaccolo M, Rudolf R.

J Cell Sci. 2012 Feb 1;125(Pt 3):714-23. doi: 10.1242/jcs.092361. Epub 2012 Feb 13.


Relevance of cohort design for studying the frequency of the ERG rearrangement in prostate cancer.

Braun M, Scheble VJ, Menon R, Scharf G, Wilbertz T, Petersen K, Beschorner C, Reischl M, Kuefer R, Schilling D, Stenzl A, Kristiansen G, Rubin MA, Fend F, Perner S.

Histopathology. 2011 Jun;58(7):1028-36. doi: 10.1111/j.1365-2559.2011.03862.x.


A novel labeling approach identifies three stability levels of acetylcholine receptors in the mouse neuromuscular junction in vivo.

Strack S, Petersen Y, Wagner A, Röder IV, Albrizio M, Reischl M, Wacker IU, Wilhelm C, Rudolf R.

PLoS One. 2011;6(6):e20524. doi: 10.1371/journal.pone.0020524. Epub 2011 Jun 2.


Frequency and clinicopathologic correlates of KRAS amplification in non-small cell lung carcinoma.

Wagner PL, Stiedl AC, Wilbertz T, Petersen K, Scheble V, Menon R, Reischl M, Mikut R, Rubin MA, Fend F, Moch H, Soltermann A, Weder W, Altorki NK, Perner S.

Lung Cancer. 2011 Oct;74(1):118-23. doi: 10.1016/j.lungcan.2011.01.029. Epub 2011 Apr 8.


SOX2 gene amplification and protein overexpression are associated with better outcome in squamous cell lung cancer.

Wilbertz T, Wagner P, Petersen K, Stiedl AC, Scheble VJ, Maier S, Reischl M, Mikut R, Altorki NK, Moch H, Fend F, Staebler A, Bass AJ, Meyerson M, Rubin MA, Soltermann A, Lengerke C, Perner S.

Mod Pathol. 2011 Jul;24(7):944-53. doi: 10.1038/modpathol.2011.49. Epub 2011 Apr 1.


SOX2 amplification is a common event in squamous cell carcinomas of different organ sites.

Maier S, Wilbertz T, Braun M, Scheble V, Reischl M, Mikut R, Menon R, Nikolov P, Petersen K, Beschorner C, Moch H, Kakies C, Protzel C, Bauer J, Soltermann A, Fend F, Staebler A, Lengerke C, Perner S.

Hum Pathol. 2011 Aug;42(8):1078-88. doi: 10.1016/j.humpath.2010.11.010. Epub 2011 Feb 21.


OrthoJacket: an active FES-hybrid orthosis for the paralysed upper extremity.

Schill O, Wiegand R, Schmitz B, Matthies R, Eck U, Pylatiuk C, Reischl M, Schulz S, Rupp R.

Biomed Tech (Berl). 2011 Feb;56(1):35-44. doi: 10.1515/BMT.2010.056. Epub 2011 Jan 7.


Surface modifications using a water-stable silanetriol in neutral aqueous media.

Spirk S, Ehmann HM, Kargl R, Hurkes N, Reischl M, Novak J, Resel R, Wu M, Pietschnig R, Ribitsch V.

ACS Appl Mater Interfaces. 2010 Oct;2(10):2956-62. doi: 10.1021/am100644r.


ERG rearrangement in small cell prostatic and lung cancer.

Scheble VJ, Braun M, Wilbertz T, Stiedl AC, Petersen K, Schilling D, Reischl M, Seitz G, Fend F, Kristiansen G, Perner S.

Histopathology. 2010 Jun;56(7):937-43. doi: 10.1111/j.1365-2559.2010.03564.x.


ERG rearrangement is specific to prostate cancer and does not occur in any other common tumor.

Scheble VJ, Braun M, Beroukhim R, Mermel CH, Ruiz C, Wilbertz T, Stiedl AC, Petersen K, Reischl M, Kuefer R, Schilling D, Fend F, Kristiansen G, Meyerson M, Rubin MA, Bubendorf L, Perner S.

Mod Pathol. 2010 Aug;23(8):1061-7. doi: 10.1038/modpathol.2010.87. Epub 2010 May 14.


Myosin Va cooperates with PKA RIalpha to mediate maintenance of the endplate in vivo.

Röder IV, Choi KR, Reischl M, Petersen Y, Diefenbacher ME, Zaccolo M, Pozzan T, Rudolf R.

Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):2031-6. doi: 10.1073/pnas.0914087107. Epub 2010 Jan 19.


Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos.

Gehrig J, Reischl M, Kalmár E, Ferg M, Hadzhiev Y, Zaucker A, Song C, Schindler S, Liebel U, Müller F.

Nat Methods. 2009 Dec;6(12):911-6. doi: 10.1038/nmeth.1396. Epub 2009 Nov 8.


Zebrafish embryos as models for embryotoxic and teratological effects of chemicals.

Yang L, Ho NY, Alshut R, Legradi J, Weiss C, Reischl M, Mikut R, Liebel U, Müller F, Strähle U.

Reprod Toxicol. 2009 Sep;28(2):245-53. doi: 10.1016/j.reprotox.2009.04.013. Epub 2009 May 4. Review.


Oscillating streaming potential measurement system for macroscopic surfaces.

Reischl M, Köstler S, Kellner G, Stana-Kleinschek K, Ribitsch V.

Rev Sci Instrum. 2008 Nov;79(11):113902. doi: 10.1063/1.3020699.


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