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Items: 21

1.

Genomic encoding of transcriptional burst kinetics.

Larsson AJM, Johnsson P, Hagemann-Jensen M, Hartmanis L, Faridani OR, Reinius B, Segerstolpe Å, Rivera CM, Ren B, Sandberg R.

Nature. 2019 Jan;565(7738):251-254. doi: 10.1038/s41586-018-0836-1. Epub 2019 Jan 2.

PMID:
30602787
2.

Reply to 'High prevalence of clonal monoallelic expression'.

Reinius B, Sandberg R.

Nat Genet. 2018 Sep;50(9):1199-1200. doi: 10.1038/s41588-018-0189-6. No abstract available.

PMID:
30082784
3.

Parental haplotype-specific single-cell transcriptomics reveal incomplete epigenetic reprogramming in human female germ cells.

Vértesy Á, Arindrarto W, Roost MS, Reinius B, Torrens-Juaneda V, Bialecka M, Moustakas I, Ariyurek Y, Kuijk E, Mei H, Sandberg R, van Oudenaarden A, Chuva de Sousa Lopes SM.

Nat Commun. 2018 May 14;9(1):1873. doi: 10.1038/s41467-018-04215-7.

4.

Comparative Analysis of Single-Cell RNA Sequencing Methods.

Ziegenhain C, Vieth B, Parekh S, Reinius B, Guillaumet-Adkins A, Smets M, Leonhardt H, Heyn H, Hellmann I, Enard W.

Mol Cell. 2017 Feb 16;65(4):631-643.e4. doi: 10.1016/j.molcel.2017.01.023.

5.

Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq.

Reinius B, Mold JE, Ramsköld D, Deng Q, Johnsson P, Michaëlsson J, Frisén J, Sandberg R.

Nat Genet. 2016 Nov;48(11):1430-1435. doi: 10.1038/ng.3678. Epub 2016 Sep 26.

6.

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos.

Petropoulos S, Edsgärd D, Reinius B, Deng Q, Panula SP, Codeluppi S, Reyes AP, Linnarsson S, Sandberg R, Lanner F.

Cell. 2016 Sep 22;167(1):285. doi: 10.1016/j.cell.2016.08.009. No abstract available.

7.

scphaser: haplotype inference using single-cell RNA-seq data.

Edsgärd D, Reinius B, Sandberg R.

Bioinformatics. 2016 Oct 1;32(19):3038-40. doi: 10.1093/bioinformatics/btw484. Epub 2016 Aug 6.

8.

Single-cell analyses of X Chromosome inactivation dynamics and pluripotency during differentiation.

Chen G, Schell JP, Benitez JA, Petropoulos S, Yilmaz M, Reinius B, Alekseenko Z, Shi L, Hedlund E, Lanner F, Sandberg R, Deng Q.

Genome Res. 2016 Oct;26(10):1342-1354. Epub 2016 Aug 2.

9.

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos.

Petropoulos S, Edsgärd D, Reinius B, Deng Q, Panula SP, Codeluppi S, Plaza Reyes A, Linnarsson S, Sandberg R, Lanner F.

Cell. 2016 May 5;165(4):1012-26. doi: 10.1016/j.cell.2016.03.023. Epub 2016 Apr 7. Erratum in: Cell. 2016 Sep 22;167(1):285.

10.

Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation.

Reinius B, Sandberg R.

Nat Rev Genet. 2015 Nov;16(11):653-64. doi: 10.1038/nrg3888. Epub 2015 Oct 7. Review.

PMID:
26442639
11.

MEG3 long noncoding RNA regulates the TGF-β pathway genes through formation of RNA-DNA triplex structures.

Mondal T, Subhash S, Vaid R, Enroth S, Uday S, Reinius B, Mitra S, Mohammed A, James AR, Hoberg E, Moustakas A, Gyllensten U, Jones SJ, Gustafsson CM, Sims AH, Westerlund F, Gorab E, Kanduri C.

Nat Commun. 2015 Jul 24;6:7743. doi: 10.1038/ncomms8743.

12.

Conditional targeting of medium spiny neurons in the striatal matrix.

Reinius B, Blunder M, Brett FM, Eriksson A, Patra K, Jonsson J, Jazin E, Kullander K.

Front Behav Neurosci. 2015 Mar 27;9:71. doi: 10.3389/fnbeh.2015.00071. eCollection 2015.

13.

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects.

Picelli S, Björklund AK, Reinius B, Sagasser S, Winberg G, Sandberg R.

Genome Res. 2014 Dec;24(12):2033-40. doi: 10.1101/gr.177881.114. Epub 2014 Jul 30.

14.

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells.

Deng Q, Ramsköld D, Reinius B, Sandberg R.

Science. 2014 Jan 10;343(6167):193-6. doi: 10.1126/science.1245316.

PMID:
24408435
15.

Elevated expression of H19 and Igf2 in the female mouse eye.

Reinius B, Kanduri C.

PLoS One. 2013;8(2):e56611. doi: 10.1371/journal.pone.0056611. Epub 2013 Feb 20.

16.

RNA-binding protein QKI regulates Glial fibrillary acidic protein expression in human astrocytes.

Radomska KJ, Halvardson J, Reinius B, Lindholm Carlström E, Emilsson L, Feuk L, Jazin E.

Hum Mol Genet. 2013 Apr 1;22(7):1373-82. doi: 10.1093/hmg/dds553. Epub 2013 Jan 15.

PMID:
23321059
17.

Abundance of female-biased and paucity of male-biased somatically expressed genes on the mouse X-chromosome.

Reinius B, Johansson MM, Radomska KJ, Morrow EH, Pandey GK, Kanduri C, Sandberg R, Williams RW, Jazin E.

BMC Genomics. 2012 Nov 10;13:607. doi: 10.1186/1471-2164-13-607.

18.

Female-biased expression of long non-coding RNAs in domains that escape X-inactivation in mouse.

Reinius B, Shi C, Hengshuo L, Sandhu KS, Radomska KJ, Rosen GD, Lu L, Kullander K, Williams RW, Jazin E.

BMC Genomics. 2010 Nov 3;11:614. doi: 10.1186/1471-2164-11-614.

19.

VGLUT2-dependent sensory neurons in the TRPV1 population regulate pain and itch.

Lagerström MC, Rogoz K, Abrahamsen B, Persson E, Reinius B, Nordenankar K, Olund C, Smith C, Mendez JA, Chen ZF, Wood JN, Wallén-Mackenzie A, Kullander K.

Neuron. 2010 Nov 4;68(3):529-42. doi: 10.1016/j.neuron.2010.09.016.

20.

Prenatal sex differences in the human brain.

Reinius B, Jazin E.

Mol Psychiatry. 2009 Nov;14(11):987, 988-9. doi: 10.1038/mp.2009.79. No abstract available.

PMID:
19851278
21.

An evolutionarily conserved sexual signature in the primate brain.

Reinius B, Saetre P, Leonard JA, Blekhman R, Merino-Martinez R, Gilad Y, Jazin E.

PLoS Genet. 2008 Jun 20;4(6):e1000100. doi: 10.1371/journal.pgen.1000100.

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