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Items: 31

1.

Measuring rank robustness in scored protein interaction networks.

Bozhilova LV, Whitmore AV, Wray J, Reinert G, Deane CM.

BMC Bioinformatics. 2019 Aug 28;20(1):446. doi: 10.1186/s12859-019-3036-6.

2.

Efficient method for estimating the number of communities in a network.

Riolo MA, Cantwell GT, Reinert G, Newman MEJ.

Phys Rev E. 2017 Sep;96(3-1):032310. doi: 10.1103/PhysRevE.96.032310. Epub 2017 Sep 14.

PMID:
29346915
3.

CommWalker: correctly evaluating modules in molecular networks in light of annotation bias.

Luecken MD, Page MJT, Crosby AJ, Mason S, Reinert G, Deane CM.

Bioinformatics. 2018 Mar 15;34(6):994-1000. doi: 10.1093/bioinformatics/btx706.

4.

A nonparametric significance test for sampled networks.

Elliott A, Leicht E, Whitmore A, Reinert G, Reed-Tsochas F.

Bioinformatics. 2018 Jan 1;34(1):64-71. doi: 10.1093/bioinformatics/btx419.

5.

Estimating the Number of Communities in a Network.

Newman ME, Reinert G.

Phys Rev Lett. 2016 Aug 12;117(7):078301. doi: 10.1103/PhysRevLett.117.078301. Epub 2016 Aug 11.

PMID:
27564002
6.

Comparison of large networks with sub-sampling strategies.

Ali W, Wegner AE, Gaunt RE, Deane CM, Reinert G.

Sci Rep. 2016 Jul 6;6:28955. doi: 10.1038/srep28955.

7.

Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics.

Ren J, Song K, Deng M, Reinert G, Cannon CH, Sun F.

Bioinformatics. 2016 Apr 1;32(7):993-1000. doi: 10.1093/bioinformatics/btv395. Epub 2015 Jun 30.

8.

Alignment-free protein interaction network comparison.

Ali W, Rito T, Reinert G, Sun F, Deane CM.

Bioinformatics. 2014 Sep 1;30(17):i430-7. doi: 10.1093/bioinformatics/btu447.

9.

New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.

Song K, Ren J, Reinert G, Deng M, Waterman MS, Sun F.

Brief Bioinform. 2014 May;15(3):343-53. doi: 10.1093/bib/bbt067. Epub 2013 Sep 23. Review.

10.

Multiple alignment-free sequence comparison.

Ren J, Song K, Sun F, Deng M, Reinert G.

Bioinformatics. 2013 Nov 1;29(21):2690-8. doi: 10.1093/bioinformatics/btt462. Epub 2013 Aug 29.

11.

Local network patterns in protein-protein interfaces.

Luo Q, Hamer R, Reinert G, Deane CM.

PLoS One. 2013;8(3):e57031. doi: 10.1371/journal.pone.0057031. Epub 2013 Mar 8.

12.

Mutual information and variants for protein domain-domain contact prediction.

Gomes M, Hamer R, Reinert G, Deane CM.

BMC Res Notes. 2012 Aug 31;5:472. doi: 10.1186/1756-0500-5-472.

13.

Normal and compound poisson approximations for pattern occurrences in NGS reads.

Zhai Z, Reinert G, Song K, Waterman MS, Luan Y, Sun F.

J Comput Biol. 2012 Jun;19(6):839-54. doi: 10.1089/cmb.2012.0029.

14.

The importance of age and high degree, in protein-protein interaction networks.

Rito T, Deane CM, Reinert G.

J Comput Biol. 2012 Jun;19(6):785-95. doi: 10.1089/cmb.2012.0054.

PMID:
22697248
15.

New powerful statistics for alignment-free sequence comparison under a pattern transfer model.

Liu X, Wan L, Li J, Reinert G, Waterman MS, Sun F.

J Theor Biol. 2011 Sep 7;284(1):106-16. doi: 10.1016/j.jtbi.2011.06.020. Epub 2011 Jun 25.

16.

Alignment-free sequence comparison (II): theoretical power of comparison statistics.

Wan L, Reinert G, Sun F, Waterman MS.

J Comput Biol. 2010 Nov;17(11):1467-90. doi: 10.1089/cmb.2010.0056. Epub 2010 Oct 25.

17.

How threshold behaviour affects the use of subgraphs for network comparison.

Rito T, Wang Z, Deane CM, Reinert G.

Bioinformatics. 2010 Sep 15;26(18):i611-7. doi: 10.1093/bioinformatics/btq386.

18.

i-Patch: interprotein contact prediction using local network information.

Hamer R, Luo Q, Armitage JP, Reinert G, Deane CM.

Proteins. 2010 Oct;78(13):2781-97. doi: 10.1002/prot.22792.

PMID:
20635422
19.

The power of detecting enriched patterns: an HMM approach.

Zhai Z, Ku SY, Luan Y, Reinert G, Waterman MS, Sun F.

J Comput Biol. 2010 Apr;17(4):581-92. doi: 10.1089/cmb.2009.0218.

20.

Deciphering chemotaxis pathways using cross species comparisons.

Hamer R, Chen PY, Armitage JP, Reinert G, Deane CM.

BMC Syst Biol. 2010 Jan 11;4:3. doi: 10.1186/1752-0509-4-3.

21.

Alignment-free sequence comparison (I): statistics and power.

Reinert G, Chew D, Sun F, Waterman MS.

J Comput Biol. 2009 Dec;16(12):1615-34. doi: 10.1089/cmb.2009.0198.

22.

Predicting and validating protein interactions using network structure.

Chen PY, Deane CM, Reinert G.

PLoS Comput Biol. 2008 Jul 25;4(7):e1000118. doi: 10.1371/journal.pcbi.1000118.

23.

A statistical approach using network structure in the prediction of protein characteristics.

Chen PY, Deane CM, Reinert G.

Bioinformatics. 2007 Sep 1;23(17):2314-21. Epub 2007 Jun 28.

PMID:
17599931
24.

On the length of the longest exact position match in a random sequence.

Reinert G, Waterman MS.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):153-6.

PMID:
17277422
25.

Left ventricular reconstruction benefits patients with ischemic cardiomyopathy and non-viable myocardium.

Ribeiro GA, da Costa CE, Lopes MM, Albuquerque AN, Antoniali F, Reinert GA, Franchini KG.

Eur J Cardiothorac Surg. 2006 Feb;29(2):196-201. Epub 2006 Jan 4.

PMID:
16388958
26.

Probabilistic and statistical properties of words: an overview.

Reinert G, Schbath S, Waterman MS.

J Comput Biol. 2000 Feb-Apr;7(1-2):1-46. Review.

PMID:
10890386
27.
28.

Poisson process approximation for sequence repeats, and sequencing by hybridization.

Arratia R, Martin D, Reinert G, Waterman MS.

J Comput Biol. 1996 Fall;3(3):425-63.

PMID:
8891959
29.

[Reactivity of amino acid side chain groups. II. N-acetyl methylam des of threonine and hydroxyproline].

Zahn H, Reinert G.

Hoppe Seylers Z Physiol Chem. 1968 May;349(5):608-10. German. No abstract available.

PMID:
5697794
30.

[Critical discussion of critical remarks on the theory of differentiation of intelligence].

Reinert G, Baltes PB, Schmidt LR.

Z Exp Angew Psychol. 1966;13(4):602-10. German. No abstract available.

PMID:
5974076
31.

[FACTOR ANALYTIC STUDIES ON THE DIFFERENTIATION HYPOTHESIS OF INTELLIGENCE: THE HYPOTHESIS OF PERFORMANCE DIFFERENTIATION].

REINERT G, BALTES PB, SCHMIDT LR.

Psychol Forsch. 1965 Mar 1;28:246-300. German. No abstract available.

PMID:
14268072

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