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Items: 1 to 50 of 286

1.

Portioning meat and vegetables in four different out of home settings: A win-win for guests, chefs and the planet.

Reinders MJ, van Lieshout L, Pot GK, Neufingerl N, van den Broek E, Battjes-Fries M, Heijnen J.

Appetite. 2019 Nov 25;147:104539. doi: 10.1016/j.appet.2019.104539. [Epub ahead of print]

PMID:
31778730
2.

ImSpectR - R package to quantify immune repertoire diversity in spectratype and repertoire sequencing data.

Cordes M, Pike-Overzet K, van Eggermond M, Vloemans S, Baert MR, Garcia-Perez L, Staal FJT, Reinders MJT, van den Akker E.

Bioinformatics. 2019 Oct 30. pii: btz804. doi: 10.1093/bioinformatics/btz804. [Epub ahead of print]

PMID:
31665245
3.

Instructional design quality in medical Massive Open Online Courses for integration into campus education.

Hendriks RA, de Jong PGM, Admiraal WF, Reinders MEJ.

Med Teach. 2019 Sep 30:1-8. doi: 10.1080/0142159X.2019.1665634. [Epub ahead of print]

PMID:
31566999
4.

Metric Learning on Expression Data for Gene Function Prediction.

Makrodimitris S, Reinders MJT, van Ham RCHJ.

Bioinformatics. 2019 Sep 28. pii: btz731. doi: 10.1093/bioinformatics/btz731. [Epub ahead of print]

PMID:
31562759
5.

From protocolized to person-centered chronic care in general practice: study protocol of an action-based research project (COPILOT).

Bogerd MJL, Slottje P, Schellevis FG, Giebels A, Rijken M, van Hout HPJ, Reinders ME.

Prim Health Care Res Dev. 2019 Sep 24;20:e134. doi: 10.1017/S1463423619000550.

6.

PRECISE: a domain adaptation approach to transfer predictors of drug response from pre-clinical models to tumors.

Mourragui S, Loog M, van de Wiel MA, Reinders MJT, Wessels LFA.

Bioinformatics. 2019 Jul 15;35(14):i510-i519. doi: 10.1093/bioinformatics/btz372.

7.

Diabetic Nephropathy Alters the Distribution of Circulating Angiogenic MicroRNAs Among Extracellular Vesicles, HDL, and Ago-2.

Florijn BW, Duijs JMGJ, Levels JH, Dallinga-Thie GM, Wang Y, Boing AN, Yuana Y, Stam W, Limpens RWAL, Au YW, Nieuwland R, Rabelink TJ, Reinders MEJ, van Zonneveld AJ, Bijkerk R.

Diabetes. 2019 Dec;68(12):2287-2300. doi: 10.2337/db18-1360. Epub 2019 Sep 10.

PMID:
31506344
8.

A comparison of automatic cell identification methods for single-cell RNA sequencing data.

Abdelaal T, Michielsen L, Cats D, Hoogduin D, Mei H, Reinders MJT, Mahfouz A.

Genome Biol. 2019 Sep 9;20(1):194. doi: 10.1186/s13059-019-1795-z.

9.

A meta-analysis of genome-wide association studies identifies multiple longevity genes.

Deelen J, Evans DS, Arking DE, Tesi N, Nygaard M, Liu X, Wojczynski MK, Biggs ML, van der Spek A, Atzmon G, Ware EB, Sarnowski C, Smith AV, Seppälä I, Cordell HJ, Dose J, Amin N, Arnold AM, Ayers KL, Barzilai N, Becker EJ, Beekman M, Blanché H, Christensen K, Christiansen L, Collerton JC, Cubaynes S, Cummings SR, Davies K, Debrabant B, Deleuze JF, Duncan R, Faul JD, Franceschi C, Galan P, Gudnason V, Harris TB, Huisman M, Hurme MA, Jagger C, Jansen I, Jylhä M, Kähönen M, Karasik D, Kardia SLR, Kingston A, Kirkwood TBL, Launer LJ, Lehtimäki T, Lieb W, Lyytikäinen LP, Martin-Ruiz C, Min J, Nebel A, Newman AB, Nie C, Nohr EA, Orwoll ES, Perls TT, Province MA, Psaty BM, Raitakari OT, Reinders MJT, Robine JM, Rotter JI, Sebastiani P, Smith J, Sørensen TIA, Taylor KD, Uitterlinden AG, van der Flier W, van der Lee SJ, van Duijn CM, van Heemst D, Vaupel JW, Weir D, Ye K, Zeng Y, Zheng W, Holstege H, Kiel DP, Lunetta KL, Slagboom PE, Murabito JM.

Nat Commun. 2019 Aug 14;10(1):3669. doi: 10.1038/s41467-019-11558-2.

10.

Beneficial effect of personalized lifestyle advice compared to generic advice on wellbeing among Dutch seniors - An explorative study.

Doets EL, de Hoogh IM, Holthuysen N, Wopereis S, Verain MCD, van den Puttelaar J, Hogenelst K, Boorsma A, Bouwman EP, Timmer M, Pasman WJ, van Erk M, Reinders MJ.

Physiol Behav. 2019 Oct 15;210:112642. doi: 10.1016/j.physbeh.2019.112642. Epub 2019 Aug 5.

11.

Lack of genotype-phenotype correlation in basal cell nevus syndrome: a Dutch multicenter retrospective cohort study.

Cosgun B, Reinders MGHC, van Geel M, Steijlen PM, van Hout AFW, Leter EM, van der Smagt JJ, van Hagen JM, Berger LPV, Kets CM, Wagner A, Aalfs CM, Hes FJ, van der Kolk LE, Gille JJP, Mosterd K.

J Am Acad Dermatol. 2019 Jul 30. pii: S0190-9622(19)32463-6. doi: 10.1016/j.jaad.2019.07.072. [Epub ahead of print] No abstract available.

PMID:
31374299
12.

Infusing Mesenchymal Stromal Cells into Porcine Kidneys during Normothermic Machine Perfusion: Intact MSCs Can Be Traced and Localised to Glomeruli.

Pool M, Eertman T, Sierra Parraga J, 't Hart N, Roemeling-van Rhijn M, Eijken M, Jespersen B, Reinders M, Hoogduijn M, Ploeg R, Leuvenink H, Moers C.

Int J Mol Sci. 2019 Jul 23;20(14). pii: E3607. doi: 10.3390/ijms20143607.

13.

A cross-cultural perspective on impact of health and nutrition claims, country-of-origin and eco-label on consumer choice of new aquaculture products.

Banovic M, Reinders MJ, Claret A, Guerrero L, Krystallis A.

Food Res Int. 2019 Sep;123:36-47. doi: 10.1016/j.foodres.2019.04.031. Epub 2019 Apr 15.

PMID:
31284987
14.

A nonsynonymous mutation in PLCG2 reduces the risk of Alzheimer's disease, dementia with Lewy bodies and frontotemporal dementia, and increases the likelihood of longevity.

van der Lee SJ, Conway OJ, Jansen I, Carrasquillo MM, Kleineidam L, van den Akker E, Hernández I, van Eijk KR, Stringa N, Chen JA, Zettergren A, Andlauer TFM, Diez-Fairen M, Simon-Sanchez J, Lleó A, Zetterberg H, Nygaard M, Blauwendraat C, Savage JE, Mengel-From J, Moreno-Grau S, Wagner M, Fortea J, Keogh MJ, Blennow K, Skoog I, Friese MA, Pletnikova O, Zulaica M, Lage C, de Rojas I, Riedel-Heller S, Illán-Gala I, Wei W, Jeune B, Orellana A, Then Bergh F, Wang X, Hulsman M, Beker N, Tesi N, Morris CM, Indakoetxea B, Collij LE, Scherer M, Morenas-Rodríguez E, Ironside JW, van Berckel BNM, Alcolea D, Wiendl H, Strickland SL, Pastor P, Rodríguez Rodríguez E; DESGESCO (Dementia Genetics Spanish Consortium), EADB (Alzheimer Disease European DNA biobank); EADB (Alzheimer Disease European DNA biobank); IFGC (International FTD-Genomics Consortium), IPDGC (The International Parkinson Disease Genomics Consortium); IPDGC (The International Parkinson Disease Genomics Consortium); RiMod-FTD (Risk and Modifying factors in Fronto-Temporal Dementia); Netherlands Brain Bank (NBB), Boeve BF, Petersen RC, Ferman TJ, van Gerpen JA, Reinders MJT, Uitti RJ, Tárraga L, Maier W, Dols-Icardo O, Kawalia A, Dalmasso MC, Boada M, Zettl UK, van Schoor NM, Beekman M, Allen M, Masliah E, de Munain AL, Pantelyat A, Wszolek ZK, Ross OA, Dickson DW, Graff-Radford NR, Knopman D, Rademakers R, Lemstra AW, Pijnenburg YAL, Scheltens P, Gasser T, Chinnery PF, Hemmer B, Huisman MA, Troncoso J, Moreno F, Nohr EA, Sørensen TIA, Heutink P, Sánchez-Juan P, Posthuma D; GIFT (Genetic Investigation in Frontotemporal Dementia and Alzheimer’s Disease) Study Group, Clarimón J, Christensen K, Ertekin-Taner N, Scholz SW, Ramirez A, Ruiz A, Slagboom E, van der Flier WM, Holstege H.

Acta Neuropathol. 2019 Aug;138(2):237-250. doi: 10.1007/s00401-019-02026-8. Epub 2019 May 27.

15.

Teaching modes and social-epistemological dimensions in medical Massive Open Online Courses: Lessons for integration in campus education.

Hendriks RA, de Jong PGM, Admiraal WF, Reinders MEJ.

Med Teach. 2019 Aug;41(8):917-926. doi: 10.1080/0142159X.2019.1592140. Epub 2019 Apr 22.

PMID:
31008667
16.

Holmium-166 Microsphere Radioembolization of Hepatic Malignancies.

Reinders MTM, Smits MLJ, van Roekel C, Braat AJAT.

Semin Nucl Med. 2019 May;49(3):237-243. doi: 10.1053/j.semnuclmed.2019.01.008. Epub 2019 Feb 1. Review.

PMID:
30954190
17.

Hepatobiliary Imaging in Liver-directed Treatments.

van Roekel C, Reinders MTM, van der Velden S, Lam MGEH, Braat MNGJA.

Semin Nucl Med. 2019 May;49(3):227-236. doi: 10.1053/j.semnuclmed.2019.01.007. Epub 2019 Feb 20. Review.

PMID:
30954189
18.

CyTOFmerge: integrating mass cytometry data across multiple panels.

Abdelaal T, Höllt T, van Unen V, Lelieveldt BPF, Koning F, Reinders MJT, Mahfouz A.

Bioinformatics. 2019 Oct 15;35(20):4063-4071. doi: 10.1093/bioinformatics/btz180.

19.

Predicting Cell Populations in Single Cell Mass Cytometry Data.

Abdelaal T, van Unen V, Höllt T, Koning F, Reinders MJT, Mahfouz A.

Cytometry A. 2019 Jul;95(7):769-781. doi: 10.1002/cyto.a.23738. Epub 2019 Mar 12.

20.

Twelve tips for integrating massive open online course content into classroom teaching.

de Jong PGM, Pickering JD, Hendriks RA, Swinnerton BJ, Goshtasbpour F, Reinders MEJ.

Med Teach. 2019 Mar 12:1-5. doi: 10.1080/0142159X.2019.1571569. [Epub ahead of print]

21.

Presence of intragraft B cells during acute renal allograft rejection is accompanied by changes in peripheral blood B cell subsets.

Heidt S, Vergunst M, Anholts JDH, Swings GMJS, Gielis EMJ, Groeneweg KE, Witkamp MJ, de Fijter JW, Reinders MEJ, Roelen DL, Eikmans M, Claas FHJ.

Clin Exp Immunol. 2019 Jun;196(3):403-414. doi: 10.1111/cei.13269. Epub 2019 Feb 17.

22.

Genetic profiling of basal cell carcinomas detects postzygotic mosaicism in basal cell naevus syndrome.

Reinders MGHC, Cosgun B, Gijezen LMC, van Oosterhoud CN, Kelleners-Smeets NWJ, Vermander E, Vreeburg M, Steijlen PM, Mosterd K, van Geel M.

Br J Dermatol. 2019 Sep;181(3):587-591. doi: 10.1111/bjd.17337. Epub 2018 Dec 5.

PMID:
30520020
23.

RNA sequencing data integration reveals an miRNA interactome of osteoarthritis cartilage.

Coutinho de Almeida R, Ramos YFM, Mahfouz A, den Hollander W, Lakenberg N, Houtman E, van Hoolwerff M, Suchiman HED, Rodríguez Ruiz A, Slagboom PE, Mei H, Kiełbasa SM, Nelissen RGHH, Reinders M, Meulenbelt I.

Ann Rheum Dis. 2019 Feb;78(2):270-277. doi: 10.1136/annrheumdis-2018-213882. Epub 2018 Dec 1.

24.

Author Correction: Pan-cancer subtyping in a 2D-map shows substructures that are driven by specific combinations of molecular characteristics.

Taskesen E, Huisman SMH, Mahfouz A, Krijthe JH, de Ridder J, van de Stolpe A, van den Akker E, Verhaegh W, Reinders MJT.

Sci Rep. 2018 Nov 23;8(1):17304. doi: 10.1038/s41598-018-35518-w.

25.

Blended group-based psychoeducation for somatoform disorders.

Boeschoten RE, van Reedt Dortland AKB, Bozelie K, Reinders M, Kuiper M, Eeckhout GM, van Oppen P.

J Psychosom Res. 2018 Dec;115:125-127. doi: 10.1016/j.jpsychores.2018.10.009. Epub 2018 Oct 19. No abstract available.

PMID:
30470311
26.

An Easy and Sensitive Method to Profile the Antibody Specificities of HLA-specific Memory B Cells.

Karahan GE, Krop J, Wehmeier C, de Vaal YJH, Langerak-Langerak J, Roelen DL, Lardy NM, Bemelman FJ, Ten Berge IJM, Reinders MEJ, van Kooten C, Claas FHJ, Heidt S.

Transplantation. 2019 Apr;103(4):716-723. doi: 10.1097/TP.0000000000002516.

27.

Systemic features of retinal vasculopathy with cerebral leukoencephalopathy and systemic manifestations: a monogenic small vessel disease.

Pelzer N, Hoogeveen ES, Haan J, Bunnik R, Poot CC, van Zwet EW, Inderson A, Fogteloo AJ, Reinders MEJ, Middelkoop HAM, Kruit MC, van den Maagdenberg AMJM, Ferrari MD, Terwindt GM.

J Intern Med. 2019 Mar;285(3):317-332. doi: 10.1111/joim.12848. Epub 2018 Nov 8.

PMID:
30411414
28.

A structural equation model for imaging genetics using spatial transcriptomics.

Huisman SMH, Mahfouz A, Batmanghelich NK, Lelieveldt BPF, Reinders MJT; Alzheimer’s Disease Neuroimaging Initiative.

Brain Inform. 2018 Nov 2;5(2):13. doi: 10.1186/s40708-018-0091-0.

29.

Predicting variant deleteriousness in non-human species: applying the CADD approach in mouse.

Groß C, de Ridder D, Reinders M.

BMC Bioinformatics. 2018 Oct 12;19(1):373. doi: 10.1186/s12859-018-2337-5.

30.

Centenarian controls increase variant effect sizes by an average twofold in an extreme case-extreme control analysis of Alzheimer's disease.

Tesi N, van der Lee SJ, Hulsman M, Jansen IE, Stringa N, van Schoor N, Meijers-Heijboer H, Huisman M, Scheltens P, Reinders MJT, van der Flier WM, Holstege H.

Eur J Hum Genet. 2019 Feb;27(2):244-253. doi: 10.1038/s41431-018-0273-5. Epub 2018 Sep 26.

31.

How Metabolic State May Regulate Fear: Presence of Metabolic Receptors in the Fear Circuitry.

Koorneef LL, Bogaards M, Reinders MJT, Meijer OC, Mahfouz A.

Front Neurosci. 2018 Aug 27;12:594. doi: 10.3389/fnins.2018.00594. eCollection 2018.

32.

Improving protein function prediction using protein sequence and GO-term similarities.

Makrodimitris S, van Ham RCHJ, Reinders MJT.

Bioinformatics. 2019 Apr 1;35(7):1116-1124. doi: 10.1093/bioinformatics/bty751.

33.

Early Steroid Withdrawal Compared With Standard Immunosuppression in Kidney Transplantation - Interim Analysis of the Amsterdam-Leiden-Groningen Randomized Controlled Trial.

van Sandwijk MS, de Vries APJ, Bakker SJL, Ten Berge IJM, Berger SP, Bouatou YR, de Fijter JW, Florquin S, Homan van der Heide JJ, Idu MM, Krikke C, van der Pant KAMI, Reinders ME, Ringers J, van der Weerd NC, Bemelman FJ, Sanders JS.

Transplant Direct. 2018 May 15;4(6):e354. doi: 10.1097/TXD.0000000000000794. eCollection 2018 Jun.

34.

Dutch Law Approves Opt-out System.

Reinders MEJ, Reiger-van de Wijdeven JMMPJ, de Jonge J, Haase-Kromwijk BJJM.

Transplantation. 2018 Aug;102(8):1202-1204. doi: 10.1097/TP.0000000000002234. No abstract available.

PMID:
30044363
35.

PTCH1 isoform 1b is the major transcript in the development of basal cell nevus syndrome.

Gielen RCAM, Reinders MGHC, Koillinen HK, Paulussen ADC, Mosterd K, van Geel M.

J Hum Genet. 2018 Sep;63(9):965-969. doi: 10.1038/s10038-018-0485-0. Epub 2018 Jun 21.

PMID:
29930296
36.

Radioembolisation in Europe: A Survey Amongst CIRSE Members.

Reinders MTM, Mees E, Powerski MJ, Bruijnen RCG, van den Bosch MAAJ, Lam MGEH, Smits MLJ.

Cardiovasc Intervent Radiol. 2018 Oct;41(10):1579-1589. doi: 10.1007/s00270-018-1982-4. Epub 2018 May 8.

37.

A survey of functional genomic variation in domesticated chickens.

Derks MFL, Megens HJ, Bosse M, Visscher J, Peeters K, Bink MCAM, Vereijken A, Gross C, de Ridder D, Reinders MJT, Groenen MAM.

Genet Sel Evol. 2018 Apr 16;50(1):17. doi: 10.1186/s12711-018-0390-1.

38.

Nucleus-specific expression in the multinuclear mushroom-forming fungus Agaricus bisporus reveals different nuclear regulatory programs.

Gehrmann T, Pelkmans JF, Ohm RA, Vos AM, Sonnenberg ASM, Baars JJP, Wösten HAB, Reinders MJT, Abeel T.

Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4429-4434. doi: 10.1073/pnas.1721381115. Epub 2018 Apr 11.

39.

No indications for platelet activation in acute clinical myocardial or renal ischemia/reperfusion injury.

Kortekaas KA, de Vries DK, Roest M, Reinders ME, van der Veer EP, Klautz RJ, de Groot PG, Schaapherder AF, Lindeman JH.

Am J Transl Res. 2018 Mar 15;10(3):816-826. eCollection 2018.

40.

New mutations and an updated database for the patched-1 (PTCH1) gene.

Reinders MG, van Hout AF, Cosgun B, Paulussen AD, Leter EM, Steijlen PM, Mosterd K, van Geel M, Gille JJ.

Mol Genet Genomic Med. 2018 May;6(3):409-415. doi: 10.1002/mgg3.380. Epub 2018 Mar 25.

41.

A pharmacological rationale for improved everolimus dosing in oncology and transplant patients.

Ter Heine R, van Erp NP, Guchelaar HJ, de Fijter JW, Reinders MEJ, van Herpen CM, Burger DM, Moes DJAR.

Br J Clin Pharmacol. 2018 Jul;84(7):1575-1586. doi: 10.1111/bcp.13591. Epub 2018 May 6.

42.

Introducing the innovative technique of 360° virtual reality in kidney transplant education.

Pieterse AD, Huurman VAL, Hierck BP, Reinders MEJ.

Transpl Immunol. 2018 Aug;49:5-6. doi: 10.1016/j.trim.2018.03.001. Epub 2018 Mar 18. No abstract available.

43.

Author Correction: Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy.

Doorenweerd N, Mahfouz A, van Putten M, Kaliyaperumal R, T' Hoen PAC, Hendriksen JGM, Aartsma-Rus AM, Verschuuren JJGM, Niks EH, Reinders MJT, Kan HE, Lelieveldt BPF.

Sci Rep. 2018 Mar 1;8(1):4058. doi: 10.1038/s41598-018-22154-7.

44.

Response to letter to the editor PD-17-0390, a comment on "Comparing methods for fetal fraction determination and quality control of NIPT samples".

van Beek DM, Straver R, Weiss MM, Boon EMJ, Huijsdens-van Amsterdam K, Oudejans CBM, Reinders MJT, Sistermans EA.

Prenat Diagn. 2017 Dec;37(12):1266-1267. doi: 10.1002/pd.5170. No abstract available.

45.

Bioinformatics in the Netherlands: the value of a nationwide community.

van Gelder CWG, Hooft RWW, van Rijswijk MN, van den Berg L, Kok RG, Reinders M, Mons B, Heringa J.

Brief Bioinform. 2018 Mar 1;19(2):359. doi: 10.1093/bib/bbx171. No abstract available.

46.

WISExome: a within-sample comparison approach to detect copy number variations in whole exome sequencing data.

Straver R, Weiss MM, Waisfisz Q, Sistermans EA, Reinders MJT.

Eur J Hum Genet. 2017 Dec;25(12):1354-1363. doi: 10.1038/s41431-017-0005-2. Epub 2017 Nov 8.

47.

Co-expression Patterns between ATN1 and ATXN2 Coincide with Brain Regions Affected in Huntington's Disease.

Keo A, Aziz NA, Dzyubachyk O, van der Grond J, van Roon-Mom WMC, Lelieveldt BPF, Reinders MJT, Mahfouz A.

Front Mol Neurosci. 2017 Nov 30;10:399. doi: 10.3389/fnmol.2017.00399. eCollection 2017.

48.

The human kidney capsule contains a functionally distinct mesenchymal stromal cell population.

Leuning DG, Engelse MA, Lievers E, Bijkerk R, Reinders MEJ, de Boer HC, van Kooten C, Rabelink TJ.

PLoS One. 2017 Dec 5;12(12):e0187118. doi: 10.1371/journal.pone.0187118. eCollection 2017.

49.

Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types.

van Unen V, Höllt T, Pezzotti N, Li N, Reinders MJT, Eisemann E, Koning F, Vilanova A, Lelieveldt BPF.

Nat Commun. 2017 Nov 23;8(1):1740. doi: 10.1038/s41467-017-01689-9.

50.

Circulating Endothelial Markers in Retinal Vasculopathy With Cerebral Leukoencephalopathy and Systemic Manifestations.

Pelzer N, Bijkerk R, Reinders MEJ, van Zonneveld AJ, Ferrari MD, van den Maagdenberg AMJM, Eikenboom J, Terwindt GM.

Stroke. 2017 Dec;48(12):3301-3307. doi: 10.1161/STROKEAHA.117.018556. Epub 2017 Nov 7.

PMID:
29114091

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