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Items: 1 to 50 of 239

1.

From Group-Level Statistics to Single-Subject Prediction: Machine Learning Detection of Concussion in Retired Athletes.

Boshra R, Dhindsa K, Boursalie O, Ruiter KI, Sonnadara R, Samavi R, Doyle TE, Reilly JP, Connolly JF.

IEEE Trans Neural Syst Rehabil Eng. 2019 Jun 12. doi: 10.1109/TNSRE.2019.2922553. [Epub ahead of print]

PMID:
31199262
2.

ETD-Cleavable Linker for Confident Cross-linked Peptide Identifications.

Zhao B, Reilly CP, Reilly JP.

J Am Soc Mass Spectrom. 2019 May 16. doi: 10.1007/s13361-019-02227-1. [Epub ahead of print]

PMID:
31098958
3.

Acute Respiratory Distress Syndrome Phenotypes.

Reilly JP, Calfee CS, Christie JD.

Semin Respir Crit Care Med. 2019 Feb;40(1):19-30. doi: 10.1055/s-0039-1684049. Epub 2019 May 6.

PMID:
31060085
4.

Postreperfusion plasma endothelial activation markers are associated with acute kidney injury after lung transplantation.

Forker CM, Miano TA, Reilly JP, Oyster ML, Porteous MK, Cantu EE 3rd, Ware LB, Diamond JM, Christie JD, Shashaty MGS.

Am J Transplant. 2019 Apr 24. doi: 10.1111/ajt.15402. [Epub ahead of print]

PMID:
31017370
5.

Identification of N-terminal protein processing sites by chemical labeling mass spectrometry.

Misal SA, Li S, Tang H, Radivojac P, Reilly JP.

Rapid Commun Mass Spectrom. 2019 Jun 15;33(11):1015-1023. doi: 10.1002/rcm.8435.

PMID:
30884002
6.

Closing the gender gap (but not the generation gap) in acute coronary syndromes.

Parikh PB, Reilly JP.

Catheter Cardiovasc Interv. 2019 Mar 1;93(4):E259-E260. doi: 10.1002/ccd.28059.

PMID:
30859727
7.

Clear as Mud: Diagnostic Uncertainty in Acute Respiratory Distress Syndrome.

Bonk MP, Reilly JP.

Ann Am Thorac Soc. 2019 Feb;16(2):197-199. doi: 10.1513/AnnalsATS.201810-697ED. No abstract available.

PMID:
30707063
8.

Septic arthritis of the hip and knee treated surgically in pediatric patients: Analysis of the Kids' Inpatient Database.

Tretiakov M, Cautela FS, Walker SE, Dekis JC, Beyer GA, Newman JM, Shah NV, Borrelli J, Shah ST, Gonzales AS 3rd, Cushman JM, Reilly JP, Schwartz JM, Scott CB, Hesham K.

J Orthop. 2019 Jan 4;16(1):97-100. doi: 10.1016/j.jor.2018.12.017. eCollection 2019 Jan-Feb.

PMID:
30655655
9.

Renal Denervation Prevents Heart Failure Progression Via Inhibition of the Renin-Angiotensin System.

Sharp TE 3rd, Polhemus DJ, Li Z, Spaletra P, Jenkins JS, Reilly JP, White CJ, Kapusta DR, Lefer DJ, Goodchild TT.

J Am Coll Cardiol. 2018 Nov 27;72(21):2609-2621. doi: 10.1016/j.jacc.2018.08.2186.

PMID:
30466519
10.

A Machine Learning Framework for Automatic and Continuous MMN Detection with Preliminary Results for Coma Outcome Prediction.

Armanfard N, Komeili M, Reilly JP, Connoly J.

IEEE J Biomed Health Inform. 2018 Oct 24. doi: 10.1109/JBHI.2018.2877738. [Epub ahead of print]

PMID:
30369457
11.

Plasma angiopoietin-2 as a potential causal marker in sepsis-associated ARDS development: evidence from Mendelian randomization and mediation analysis.

Reilly JP, Wang F, Jones TK, Palakshappa JA, Anderson BJ, Shashaty MGS, Dunn TG, Johansson ED, Riley TR, Lim B, Abbott J, Ittner CAG, Cantu E, Lin X, Mikacenic C, Wurfel MM, Christiani DC, Calfee CS, Matthay MA, Christie JD, Feng R, Meyer NJ.

Intensive Care Med. 2018 Nov;44(11):1849-1858. doi: 10.1007/s00134-018-5328-0. Epub 2018 Oct 21.

PMID:
30343317
12.

Quantitative peripheral muscle ultrasound in sepsis: Muscle area superior to thickness.

Palakshappa JA, Reilly JP, Schweickert WD, Anderson BJ, Khoury V, Shashaty MG, Fitzgerald D, Forker C, Butler K, Ittner CA, Feng R, Files DC, Bonk MP, Christie JD, Meyer NJ.

J Crit Care. 2018 Oct;47:324-330. doi: 10.1016/j.jcrc.2018.04.003.

PMID:
30224027
13.

Low to Moderate Air Pollutant Exposure and Acute Respiratory Distress Syndrome after Severe Trauma.

Reilly JP, Zhao Z, Shashaty MGS, Koyama T, Christie JD, Lanken PN, Wang C, Balmes JR, Matthay MA, Calfee CS, Ware LB.

Am J Respir Crit Care Med. 2019 Jan 1;199(1):62-70. doi: 10.1164/rccm.201803-0435OC.

PMID:
30067389
14.

Why do we avoid radial procedures?

Reilly JP.

Catheter Cardiovasc Interv. 2018 Jun;91(7):1281-1282. doi: 10.1002/ccd.27675.

PMID:
29894596
15.

Unusual fragmentation of derivatized cysteine-containing peptides.

DeGraan-Weber N, Zhao B, Reilly JP.

Rapid Commun Mass Spectrom. 2018 Jun 6. doi: 10.1002/rcm.8196. [Epub ahead of print]

PMID:
29874404
16.

Genome-Wide Association Study in African Americans with Acute Respiratory Distress Syndrome Identifies the Selectin P Ligand Gene as a Risk Factor.

Bime C, Pouladi N, Sammani S, Batai K, Casanova N, Zhou T, Kempf CL, Sun X, Camp SM, Wang T, Kittles RA, Lussier YA, Jones TK, Reilly JP, Meyer NJ, Christie JD, Karnes JH, Gonzalez-Garay M, Christiani DC, Yates CR, Wurfel MM, Meduri GU, Garcia JGN.

Am J Respir Crit Care Med. 2018 Jun 1;197(11):1421-1432. doi: 10.1164/rccm.201705-0961OC.

17.

Trends and Epidemiology of Tennis-Related Sprains/Strains in the United States, 2010 to 2016.

Chevinsky JD, Newman JM, Shah NV, Pancholi N, Holliman J, Sodhi N, Eldib A, Naziri Q, Zikria BA, Reilly JP, Barbash SE, Urban WP.

Surg Technol Int. 2017 Dec 22;31:333-338.

PMID:
29315449
18.

Use of Cysteine Aminoethylation To Identify the Hypervariable Peptides of an Antibody.

DeGraan-Weber N, Reilly JP.

Anal Chem. 2018 Feb 6;90(3):1608-1612. doi: 10.1021/acs.analchem.7b02732. Epub 2018 Jan 19.

PMID:
29236482
19.

Myeloperoxidase-derived 2-chlorofatty acids contribute to human sepsis mortality via acute respiratory distress syndrome.

Meyer NJ, Reilly JP, Feng R, Christie JD, Hazen SL, Albert CJ, Franke JD, Hartman CL, McHowat J, Ford DA.

JCI Insight. 2017 Dec 7;2(23). pii: 96432. doi: 10.1172/jci.insight.96432.

20.

Mortality Benefit of Recombinant Human Interleukin-1 Receptor Antagonist for Sepsis Varies by Initial Interleukin-1 Receptor Antagonist Plasma Concentration.

Meyer NJ, Reilly JP, Anderson BJ, Palakshappa JA, Jones TK, Dunn TG, Shashaty MGS, Feng R, Christie JD, Opal SM.

Crit Care Med. 2018 Jan;46(1):21-28. doi: 10.1097/CCM.0000000000002749.

21.

A Novel Triethylphosphonium Charge Tag on Peptides: Synthesis, Derivatization, and Fragmentation.

DeGraan-Weber N, Ward SA, Reilly JP.

J Am Soc Mass Spectrom. 2017 Sep;28(9):1889-1900. doi: 10.1007/s13361-017-1694-z. Epub 2017 May 30.

22.

Resistant hypertension in 2017.

Hans S, Reilly JP.

Curr Opin Cardiol. 2017 Jul;32(4):389-396. doi: 10.1097/HCO.0000000000000412. Review.

PMID:
28505045
23.

Fifty Years of Research in ARDS. Genomic Contributions and Opportunities.

Reilly JP, Christie JD, Meyer NJ.

Am J Respir Crit Care Med. 2017 Nov 1;196(9):1113-1121. doi: 10.1164/rccm.201702-0405CP. Review.

24.

Left Atrial Appendage Occlusion for Stroke Prevention.

Chanda A, Reilly JP.

Prog Cardiovasc Dis. 2017 May - Jun;59(6):626-635. doi: 10.1016/j.pcad.2017.04.003. Epub 2017 Apr 28. Review.

PMID:
28457791
25.

Women and men, the same and different.

Oleck S, Reilly JP.

Catheter Cardiovasc Interv. 2017 Mar 1;89(4):638-639. doi: 10.1002/ccd.27016. No abstract available.

PMID:
28342254
26.

Logistic Localized Modeling of the Sample Space for Feature Selection and Classification.

Armanfard N, Reilly JP, Komeili M.

IEEE Trans Neural Netw Learn Syst. 2018 May;29(5):1396-1413. doi: 10.1109/TNNLS.2017.2676101. Epub 2017 Mar 21.

PMID:
28333643
27.

Automatic and continuous assessment of ERPs for mismatch negativity detection.

Armanfard N, Komeili M, Reilly JP, Mah R, Connolly JF.

Conf Proc IEEE Eng Med Biol Soc. 2016 Aug;2016:969-972. doi: 10.1109/EMBC.2016.7590863.

PMID:
28268485
28.

Mechanisms and Effects of Transcranial Direct Current Stimulation.

Giordano J, Bikson M, Kappenman ES, Clark VP, Coslett HB, Hamblin MR, Hamilton R, Jankord R, Kozumbo WJ, McKinley RA, Nitsche MA, Reilly JP, Richardson J, Wurzman R, Calabrese E.

Dose Response. 2017 Feb 9;15(1):1559325816685467. doi: 10.1177/1559325816685467. eCollection 2017 Jan-Mar.

29.

EEG and fMRI agree: Mental arithmetic is the easiest form of imagery to detect.

Harrison AH, Noseworthy MD, Reilly JP, Guan W, Connolly JF.

Conscious Cogn. 2017 Feb;48:104-116. doi: 10.1016/j.concog.2016.10.006. Epub 2016 Nov 14.

PMID:
27855346
30.

Admission plasma levels of the neuronal injury marker neuron-specific enolase are associated with mortality and delirium in sepsis.

Anderson BJ, Reilly JP, Shashaty MGS, Palakshappa JA, Wysoczanski A, Dunn TG, Kazi A, Tommasini A, Mikkelsen ME, Schweickert WD, Kolson DL, Christie JD, Meyer NJ.

J Crit Care. 2016 Dec;36:18-23. doi: 10.1016/j.jcrc.2016.06.012. Epub 2016 Jun 23.

31.

Distinguishing Aspartic and Isoaspartic Acids in Peptides by Several Mass Spectrometric Fragmentation Methods.

DeGraan-Weber N, Zhang J, Reilly JP.

J Am Soc Mass Spectrom. 2016 Dec;27(12):2041-2053. Epub 2016 Sep 9.

32.

Renal Denervation for Resistant Hypertension.

Reilly JP, White CJ.

Prog Cardiovasc Dis. 2016 Nov - Dec;59(3):295-302. doi: 10.1016/j.pcad.2016.10.003. Epub 2016 Oct 24. Review.

PMID:
27789315
33.

Using the Minimally Invasive Impella 5.0 via the Right Subclavian Artery Cutdown for Acute on Chronic Decompensated Heart Failure as a Bridge to Decision.

Bansal A, Bhama JK, Patel R, Desai S, Mandras SA, Patel H, Collins T, Reilly JP, Ventura HO, Parrino PE.

Ochsner J. 2016 Fall;16(3):210-6.

34.

Impact of Amidination on Peptide Fragmentation and Identification in Shotgun Proteomics.

Li S, Dabir A, Misal SA, Tang H, Radivojac P, Reilly JP.

J Proteome Res. 2016 Oct 7;15(10):3656-3665. Epub 2016 Sep 27.

35.

Neutropenic sepsis is associated with distinct clinical and biological characteristics: a cohort study of severe sepsis.

Reilly JP, Anderson BJ, Hudock KM, Dunn TG, Kazi A, Tommasini A, Charles D, Shashaty MG, Mikkelsen ME, Christie JD, Meyer NJ.

Crit Care. 2016 Jul 18;20(1):222. doi: 10.1186/s13054-016-1398-y.

36.

"Won't Get Fooled Again".

White CJ, Reilly JP.

JACC Cardiovasc Interv. 2016 Jun 27;9(12):1300-1. doi: 10.1016/j.jcin.2016.04.034. Epub 2016 Jun 20. No abstract available.

37.

Predicting and Eventually Preventing the Future: Sepsis Risk in Community-Dwelling Adults.

Reilly JP.

Crit Care Med. 2016 Jul;44(7):1425-6. doi: 10.1097/CCM.0000000000001755. No abstract available.

38.

Measurement and simulation of unmyelinated nerve electrostimulation: Lumbricus terrestris experiment and numerical model.

Šarolić A, Živković Z, Reilly JP.

Phys Med Biol. 2016 Jun 21;61(12):4364-75. doi: 10.1088/0031-9155/61/12/4364. Epub 2016 May 25.

PMID:
27224060
39.

Survey of numerical electrostimulation models.

Reilly JP.

Phys Med Biol. 2016 Jun 21;61(12):4346-63. doi: 10.1088/0031-9155/61/12/4346. Epub 2016 May 25.

PMID:
27223870
40.

Low-frequency electrical dosimetry: research agenda of the IEEE International Committee on Electromagnetic Safety.

Reilly JP, Hirata A.

Phys Med Biol. 2016 Jun 21;61(12):R138-49. doi: 10.1088/0031-9155/61/12/R138. Epub 2016 May 25. Review.

PMID:
27223463
41.

Special section: Recent progress in low-frequency dosimetry modeling: from induction to electrostimulation.

Hirata A, Reilly JP.

Phys Med Biol. 2016 Jun 21;61(12):E1-2. doi: 10.1088/0031-9155/61/12/E1. Epub 2016 May 25. No abstract available.

PMID:
27223103
42.

Is It Possible to Prevent ARDS?

Reilly JP, Christie JD.

JAMA. 2016 Jun 14;315(22):2403-5. doi: 10.1001/jama.2016.5988. No abstract available.

PMID:
27179673
43.

Ozone and Acute Respiratory Distress Syndrome. It's in the Air We Breathe.

Reilly JP.

Am J Respir Crit Care Med. 2016 May 15;193(10):1079-80. doi: 10.1164/rccm.201512-2517ED. No abstract available.

44.

XLSearch: a Probabilistic Database Search Algorithm for Identifying Cross-Linked Peptides.

Ji C, Li S, Reilly JP, Radivojac P, Tang H.

J Proteome Res. 2016 Jun 3;15(6):1830-41. doi: 10.1021/acs.jproteome.6b00004. Epub 2016 May 6.

45.

Low Plasma Levels of Adiponectin Do Not Explain Acute Respiratory Distress Syndrome Risk: a Prospective Cohort Study of Patients with Severe Sepsis.

Palakshappa JA, Anderson BJ, Reilly JP, Shashaty MG, Ueno R, Wu Q, Ittner CA, Tommasini A, Dunn TG, Charles D, Kazi A, Christie JD, Meyer NJ.

Crit Care. 2016 Mar 16;20:71. doi: 10.1186/s13054-016-1244-2.

46.

Factors Affecting the Production of Aromatic Immonium Ions in MALDI 157 nm Photodissociation Studies.

DeGraan-Weber N, Ashley DC, Keijzer K, Baik MH, Reilly JP.

J Am Soc Mass Spectrom. 2016 May;27(5):834-46. doi: 10.1007/s13361-015-1329-1. Epub 2016 Feb 29.

PMID:
26926443
47.

Plasma Levels of Receptor Interacting Protein Kinase-3 (RIP3), an Essential Mediator of Necroptosis, are Associated with Acute Kidney Injury in Critically Ill Trauma Patients.

Shashaty MG, Reilly JP, Sims CA, Holena DN, Qing D, Forker CM, Hotz MJ, Meyer NJ, Lanken PN, Feldman HI, Christie JD, Mangalmurti NS.

Shock. 2016 Aug;46(2):139-43. doi: 10.1097/SHK.0000000000000596.

48.

Systematic oral hydration with water is similar to parenteral hydration for prevention of contrast-induced nephropathy: an updated meta-analysis of randomised clinical data.

Agarwal SK, Mohareb S, Patel A, Yacoub R, DiNicolantonio JJ, Konstantinidis I, Pathak A, Fnu S, Annapureddy N, Simoes PK, Kamat S, El-Hayek G, Prasad R, Kumbala D, Nascimento RM, Reilly JP, Nadkarni GN, Benjo AM.

Open Heart. 2015 Oct 5;2(1):e000317. doi: 10.1136/openhrt-2015-000317. eCollection 2015.

49.

NYPD Cancer Incidence Rates 1995-2014 Encompassing the Entire World Trade Center Cohort.

Kleinman EJ, Christos PJ, Gerber LM, Reilly JP, Moran WF, Einstein AJ, Neugut AI.

J Occup Environ Med. 2015 Oct;57(10):e101-13. doi: 10.1097/JOM.0000000000000542. Erratum in: J Occup Environ Med. 2015 Dec;57(12):e160.

PMID:
26461871
50.

Local Feature Selection for Data Classification.

Armanfard N, Reilly JP, Komeili M.

IEEE Trans Pattern Anal Mach Intell. 2016 Jun;38(6):1217-27. doi: 10.1109/TPAMI.2015.2478471. Epub 2015 Sep 14.

PMID:
26390448

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