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Items: 1 to 50 of 70

1.

Revealing the Superpowers of PrimPol: rescuing replicating microsatellites.

Reid JE, Fischer T.

EMBO J. 2019 Feb 1;38(3). pii: e101298. doi: 10.15252/embj.2018101298. Epub 2019 Jan 14. No abstract available.

PMID:
30643020
2.

Machine learning based classification of cells into chronological stages using single-cell transcriptomics.

Singh SP, Janjuha S, Chaudhuri S, Reinhardt S, Kränkel A, Dietz S, Eugster A, Bilgin H, Korkmaz S, Zararsız G, Ninov N, Reid JE.

Sci Rep. 2018 Nov 21;8(1):17156. doi: 10.1038/s41598-018-35218-5.

3.

Branch-recombinant Gaussian processes for analysis of perturbations in biological time series.

Penfold CA, Sybirna A, Reid JE, Huang Y, Wernisch L, Ghahramani Z, Grant M, Surani MA.

Bioinformatics. 2018 Sep 1;34(17):i1005-i1013. doi: 10.1093/bioinformatics/bty603.

4.

GPseudoRank: a permutation sampler for single cell orderings.

Strauß ME, Reid JE, Wernisch L.

Bioinformatics. 2019 Feb 15;35(4):611-618. doi: 10.1093/bioinformatics/bty664.

PMID:
30052778
5.

Structure and dynamics of ionic liquids: general discussion.

Addicoat M, Atkin R, Canongia Lopes JN, Costa Gomes M, Firestone M, Gardas R, Halstead S, Hardacre C, Hardwick LJ, Holbrey J, Hunt P, Ivaništšev V, Jacquemin J, Jones R, Kirchner B, Lynden-Bell R, MacFarlane D, Marlair G, Medhi H, Mezger M, Pádua A, Pantenburg I, Perkin S, Reid JESJ, Rutland M, Saha S, Shimizu K, Slattery JM, Swadźba-Kwaśny M, Tiwari S, Tsuzuki S, Uralcan B, van den Bruinhorst A, Watanabe M, Wishart J.

Faraday Discuss. 2018 Jan 1;206:291-337. doi: 10.1039/C7FD90092A. Epub 2017 Nov 30. No abstract available.

PMID:
29188846
6.

Electrochemistry: general discussion.

Abbott A, Aldous L, Borisenko N, Coles S, Fontaine O, Gamarra Garcia JD, Gardas R, Hammond O, Hardwick LJ, Haumesser PH, Hausen F, Horwood C, Jacquemin J, Jones R, Jónsson E, Lahiri A, MacFarlane D, Marlair G, May B, Medhi H, Paschoal VH, Reid JESJ, Schoetz T, Tamura K, Thomas ML, Tiwari S, Uralcan B, van den Bruinhorst A, Watanabe M, Wishart J.

Faraday Discuss. 2018 Jan 1;206:405-426. doi: 10.1039/c7fd90093g. Epub 2017 Nov 29. No abstract available.

PMID:
29186221
7.

Phase behaviour and thermodynamics: general discussion.

Abbott A, Abe H, Aldous L, Atkin R, Bendová M, Busato M, Canongia Lopes JN, Costa Gomes M, Cross B, Dietz C, Everts J, Firestone M, Gardas R, Gras M, Greaves T, Halstead S, Hardacre C, Harper J, Holbrey J, Jacquemin J, Jessop P, MacFarlane D, Maier F, Medhi H, Mezger M, Pádua A, Perkin S, Reid JESJ, Saha S, Slattery JM, Thomas ML, Tiwari S, Tsuzuki S, Uralcan B, Watanabe M, Wishart J, Youngs T.

Faraday Discuss. 2017 Dec 14;206:113-139. doi: 10.1039/c7fd90091k. No abstract available.

PMID:
29185568
8.

RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit.

Milligan L, Sayou C, Tuck A, Auchynnikava T, Reid JE, Alexander R, Alves FL, Allshire R, Spanos C, Rappsilber J, Beggs JD, Kudla G, Tollervey D.

Elife. 2017 Oct 13;6. pii: e27082. doi: 10.7554/eLife.27082.

9.

Structure-property relationships in protic ionic liquids: a study of solvent-solvent and solvent-solute interactions.

Reid JESJ, Bernardes CES, Agapito F, Martins F, Shimizu S, Minas da Piedade ME, Walker AJ.

Phys Chem Chem Phys. 2017 Oct 25;19(41):28133-28138. doi: 10.1039/c7cp05076c.

PMID:
29022017
10.

Analytical validation of a 12-gene molecular test for the prediction of distant recurrence in breast cancer.

Warf MB, Rajamani S, Krappmann K, Doedt J, Cassiano J, Brown K, Reid JE, Kronenwett R, Roa BB.

Future Sci OA. 2017 Jun 5;3(3):FSO221. doi: 10.4155/fsoa-2017-0051. eCollection 2017 Aug.

11.

Structure-property relationships in protic ionic liquids: a thermochemical study.

Reid JESJ, Agapito F, Bernardes CES, Martins F, Walker AJ, Shimizu S, Minas da Piedade ME.

Phys Chem Chem Phys. 2017 Aug 2;19(30):19928-19936. doi: 10.1039/c7cp02230a.

PMID:
28721423
12.

The properties of residual water molecules in ionic liquids: a comparison between direct and inverse Kirkwood-Buff approaches.

Kobayashi T, Reid JESJ, Shimizu S, Fyta M, Smiatek J.

Phys Chem Chem Phys. 2017 Jul 26;19(29):18924-18937. doi: 10.1039/c7cp03717a.

PMID:
28715012
13.

Patterns of retinal hemorrhage associated with pediatric cerebral sinovenous thrombosis.

Binenbaum G, Reid JE, Rogers DL, Jensen AK, Billinghurst LL, Forbes BJ.

J AAPOS. 2017 Feb;21(1):23-27. doi: 10.1016/j.jaapos.2016.10.004. Epub 2017 Jan 11.

PMID:
28087346
14.

Interactions in Water-Ionic Liquid Mixtures: Comparing Protic and Aprotic Systems.

Reid JE, Gammons RJ, Slattery JM, Walker AJ, Shimizu S.

J Phys Chem B. 2017 Jan 26;121(3):599-609. doi: 10.1021/acs.jpcb.6b10562. Epub 2017 Jan 13.

PMID:
28084738
15.

Sixth Nerve Palsy in Paediatric Intracranial Hypertension.

Reid JE, Reem RE, Aylward SC, Rogers DL.

Neuroophthalmology. 2016 Jan 30;40(1):23-27. eCollection 2016 Feb.

16.

Pseudotime estimation: deconfounding single cell time series.

Reid JE, Wernisch L.

Bioinformatics. 2016 Oct 1;32(19):2973-80. doi: 10.1093/bioinformatics/btw372. Epub 2016 Jun 17.

17.

Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling.

Barrass JD, Reid JE, Huang Y, Hector RD, Sanguinetti G, Beggs JD, Granneman S.

Genome Biol. 2015 Dec 17;16:282. doi: 10.1186/s13059-015-0848-1.

18.

Conserved Cis-Regulatory Modules Control Robustness in Msx1 Expression at Single-Cell Resolution.

Vance KW, Woodcock DJ, Reid JE, Bretschneider T, Ott S, Koentges G.

Genome Biol Evol. 2015 Sep 4;7(9):2762-78. doi: 10.1093/gbe/evv179.

19.

Analytical validation of a proliferation-based molecular signature used as a prognostic marker in early stage lung adenocarcinoma.

Warf MB, Fosso PG, Hughes E, Perry M, Brown KL, Reid JE, Kolquist KA, Wagner S, Gutin A, Roa B.

Biomark Med. 2015;9(9):901-10. doi: 10.2217/bmm.15.46. Epub 2015 Jul 9.

PMID:
26158298
20.

Validation of an RNA cell cycle progression score for predicting death from prostate cancer in a conservatively managed needle biopsy cohort.

Cuzick J, Stone S, Fisher G, Yang ZH, North BV, Berney DM, Beltran L, Greenberg D, Møller H, Reid JE, Gutin A, Lanchbury JS, Brawer M, Scardino P.

Br J Cancer. 2015 Jul 28;113(3):382-9. doi: 10.1038/bjc.2015.223. Epub 2015 Jun 23.

21.

Residual water in ionic liquids: clustered or dissociated?

Reid JE, Walker AJ, Shimizu S.

Phys Chem Chem Phys. 2015 Jun 14;17(22):14710-8. doi: 10.1039/c5cp01854d.

PMID:
25974272
22.

Phase II Study of Gemcitabine, Carboplatin, and Iniparib As Neoadjuvant Therapy for Triple-Negative and BRCA1/2 Mutation-Associated Breast Cancer With Assessment of a Tumor-Based Measure of Genomic Instability: PrECOG 0105.

Telli ML, Jensen KC, Vinayak S, Kurian AW, Lipson JA, Flaherty PJ, Timms K, Abkevich V, Schackmann EA, Wapnir IL, Carlson RW, Chang PJ, Sparano JA, Head B, Goldstein LJ, Haley B, Dakhil SR, Reid JE, Hartman AR, Manola J, Ford JM.

J Clin Oncol. 2015 Jun 10;33(17):1895-901. doi: 10.1200/JCO.2014.57.0085. Epub 2015 Apr 6.

23.

STEME: a robust, accurate motif finder for large data sets.

Reid JE, Wernisch L.

PLoS One. 2014 Mar 13;9(3):e90735. doi: 10.1371/journal.pone.0090735. eCollection 2014.

24.

Resident Rounds. Part III. Cutaneous Mycobacterium avium-intracellulare resembling sarcoidosis.

Smith JM, Reid JE, Wilson ML.

J Drugs Dermatol. 2013 Apr;12(4):490-1. No abstract available.

PMID:
23652903
25.

Combretazet-3 a novel synthetic cis-stable combretastatin A-4-azetidinone hybrid with enhanced stability and therapeutic efficacy in colon cancer.

Greene LM, Wang S, O'Boyle NM, Bright SA, Reid JE, Kelly P, Meegan MJ, Zisterer DM.

Oncol Rep. 2013 Jun;29(6):2451-8. doi: 10.3892/or.2013.2379. Epub 2013 Apr 3.

PMID:
23564200
26.

Validation of a cell-cycle progression gene panel to improve risk stratification in a contemporary prostatectomy cohort.

Cooperberg MR, Simko JP, Cowan JE, Reid JE, Djalilvand A, Bhatnagar S, Gutin A, Lanchbury JS, Swanson GP, Stone S, Carroll PR.

J Clin Oncol. 2013 Apr 10;31(11):1428-34. doi: 10.1200/JCO.2012.46.4396. Epub 2013 Mar 4.

27.

Prognostic value of a cell cycle progression signature for prostate cancer death in a conservatively managed needle biopsy cohort.

Cuzick J, Berney DM, Fisher G, Mesher D, Møller H, Reid JE, Perry M, Park J, Younus A, Gutin A, Foster CS, Scardino P, Lanchbury JS, Stone S; Transatlantic Prostate Group.

Br J Cancer. 2012 Mar 13;106(6):1095-9. doi: 10.1038/bjc.2012.39. Epub 2012 Feb 23.

28.

STEME: efficient EM to find motifs in large data sets.

Reid JE, Wernisch L.

Nucleic Acids Res. 2011 Oct;39(18):e126. doi: 10.1093/nar/gkr574. Epub 2011 Jul 23.

29.

Palladium-103 eye plaque brachytherapy for primary adenocarcinoma of the ciliary body epithelium.

Finger PT, Reid JE, Iacob CE.

Brachytherapy. 2011 Nov-Dec;10(6):503-7. doi: 10.1016/j.brachy.2011.01.013. Epub 2011 Mar 9.

PMID:
21393069
30.

Prognostic value of an RNA expression signature derived from cell cycle proliferation genes in patients with prostate cancer: a retrospective study.

Cuzick J, Swanson GP, Fisher G, Brothman AR, Berney DM, Reid JE, Mesher D, Speights VO, Stankiewicz E, Foster CS, Møller H, Scardino P, Warren JD, Park J, Younus A, Flake DD 2nd, Wagner S, Gutin A, Lanchbury JS, Stone S; Transatlantic Prostate Group.

Lancet Oncol. 2011 Mar;12(3):245-55. doi: 10.1016/S1470-2045(10)70295-3.

31.

Prevalence of BRCA1 and BRCA2 mutations in women with breast carcinoma In Situ and referred for genetic testing.

Hall MJ, Reid JE, Wenstrup RJ.

Cancer Prev Res (Phila). 2010 Dec;3(12):1579-85. doi: 10.1158/1940-6207.CAPR-09-0218.

32.

An alignment-free model for comparison of regulatory sequences.

Koohy H, Dyer NP, Reid JE, Koentges G, Ott S.

Bioinformatics. 2010 Oct 1;26(19):2391-7. doi: 10.1093/bioinformatics/btq453. Epub 2010 Aug 9.

PMID:
20696736
33.

The meningococcal vaccine candidate neisserial surface protein A (NspA) binds to factor H and enhances meningococcal resistance to complement.

Lewis LA, Ngampasutadol J, Wallace R, Reid JE, Vogel U, Ram S.

PLoS Pathog. 2010 Jul 29;6(7):e1001027. doi: 10.1371/journal.ppat.1001027.

34.

Interferon regulatory factor-8 modulates the development of tumour-induced CD11b+Gr-1+ myeloid cells.

Stewart TJ, Greeneltch KM, Reid JE, Liewehr DJ, Steinberg SM, Liu K, Abrams SI.

J Cell Mol Med. 2009 Sep;13(9B):3939-50. doi: 10.1111/j.1582-4934.2009.00685.x.

35.

Variable structure motifs for transcription factor binding sites.

Reid JE, Evans KJ, Dyer N, Wernisch L, Ott S.

BMC Genomics. 2010 Jan 14;11:30. doi: 10.1186/1471-2164-11-30.

36.

Transcriptional programs: modelling higher order structure in transcriptional control.

Reid JE, Ott S, Wernisch L.

BMC Bioinformatics. 2009 Jul 16;10:218. doi: 10.1186/1471-2105-10-218.

37.

Facile preparation of a new gadofullerene-based magnetic resonance imaging contrast agent with high 1H relaxivity.

Shu C, Corwin FD, Zhang J, Chen Z, Reid JE, Sun M, Xu W, Sim JH, Wang C, Fatouros PP, Esker AR, Gibson HW, Dorn HC.

Bioconjug Chem. 2009 Jun;20(6):1186-93. doi: 10.1021/bc900051d.

38.

Syntheses and structures of phenyl-C81-butyric acid methyl esters (PCBMs) from M3N@C80.

Shu C, Xu W, Slebodnick C, Champion H, Fu W, Reid JE, Azurmendi H, Wang C, Harich K, Dorn HC, Gibson HW.

Org Lett. 2009 Apr 16;11(8):1753-6. doi: 10.1021/ol9002527.

PMID:
19309087
39.

BRCA1 and BRCA2 mutations in women of different ethnicities undergoing testing for hereditary breast-ovarian cancer.

Hall MJ, Reid JE, Burbidge LA, Pruss D, Deffenbaugh AM, Frye C, Wenstrup RJ, Ward BE, Scholl TA, Noll WW.

Cancer. 2009 May 15;115(10):2222-33. doi: 10.1002/cncr.24200. Erratum in: Cancer. 2009 Jun 15;115(12):2804.

40.

Highly regioselective derivatization of trimetallic nitride templated endohedral metallofullerenes via a facile photochemical reaction.

Shu C, Slebodnick C, Xu L, Champion H, Fuhrer T, Cai T, Reid JE, Fu W, Harich K, Dorn HC, Gibson HW.

J Am Chem Soc. 2008 Dec 31;130(52):17755-60. doi: 10.1021/ja804909t.

PMID:
19055362
41.

Selective formation of a symmetric Sc3N@C78 bisadduct: adduct docking controlled by an internal trimetallic nitride cluster.

Cai T, Xu L, Shu C, Champion HA, Reid JE, Anklin C, Anderson MR, Gibson HW, Dorn HC.

J Am Chem Soc. 2008 Feb 20;130(7):2136-7. doi: 10.1021/ja077630m. Epub 2008 Jan 25. No abstract available.

PMID:
18217757
42.

Prediction of MLH1 and MSH2 mutations in Lynch syndrome.

Balmaña J, Stockwell DH, Steyerberg EW, Stoffel EM, Deffenbaugh AM, Reid JE, Ward B, Scholl T, Hendrickson B, Tazelaar J, Burbidge LA, Syngal S.

JAMA. 2006 Sep 27;296(12):1469-78.

PMID:
17003395
43.

Nutritional and safety assessments of foods and feeds nutritionally improved through biotechnology.

Chassy B, Hlywka JJ, Kleter GA, Kok EJ, Kuiper HA, McGloughlin M, Munro IC, Phipps RH, Reid JE, Stein J, Zabik J; Task Force for the International Life Sciences Institutue International Food Biotechnology Committee.

Food Nutr Bull. 2005 Dec;26(4):436-42. Review. No abstract available.

PMID:
16465993
44.

Synthesis and purification of a metallic nitride fullerene bisadduct: exploring the reactivity of Gd3N@C80.

Stevenson S, Stephen RR, Amos TM, Cadorette VR, Reid JE, Phillips JP.

J Am Chem Soc. 2005 Sep 21;127(37):12776-7.

PMID:
16159252
45.

Pyramidalization of Gd3N inside a C80 cage. The synthesis and structure of Gd3N@C80.

Stevenson S, Phillips JP, Reid JE, Olmstead MM, Rath SP, Balch AL.

Chem Commun (Camb). 2004 Dec 21;(24):2814-5. Epub 2004 Nov 16.

PMID:
15599420
46.

Manual versus target-controlled infusions of propofol.

Breslin DS, Mirakhur RK, Reid JE, Kyle A.

Anaesthesia. 2004 Nov;59(11):1059-63.

47.

Hazard ratio in clinical trials.

Spruance SL, Reid JE, Grace M, Samore M.

Antimicrob Agents Chemother. 2004 Aug;48(8):2787-92. Review. No abstract available.

48.

Genetic polymorphisms of the beta-adrenergic system: association with essential hypertension and response to beta-blockade.

Filigheddu F, Reid JE, Troffa C, PinnaParpaglia P, Argiolas G, Testa A, Skolnick M, Glorioso N.

Pharmacogenomics J. 2004;4(3):154-60. No abstract available.

PMID:
15069461
49.

Stochastic finite element analysis of biological systems: comparison of a simple intervertebral disc model with experimental results.

Espino DM, Meakin JR, Hukins DW, Reid JE.

Comput Methods Biomech Biomed Engin. 2003 Aug;6(4):243-8.

PMID:
12959758

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