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Correction to: NSAID use and somatic exomic mutations in Barrett's esophagus.

Galipeau PC, Oman KM, Paulson TG, Sanchez CA, Zhang Q, Marty JA, Delrow JJ, Kuhner MK, Vaughan TL, Reid BJ, Li X.

Genome Med. 2019 Mar 12;11(1):14. doi: 10.1186/s13073-019-0625-y.


No Association Between Vitamin D Status and Risk of Barrett's Esophagus or Esophageal Adenocarcinoma: A Mendelian Randomization Study.

Dong J, Gharahkhani P, Chow WH, Gammon MD, Liu G, Caldas C, Wu AH, Ye W, Onstad L, Anderson LA, Bernstein L, Pharoah PD, Risch HA, Corley DA, Fitzgerald RC; Stomach and Esophageal Cancer Study Consortium, Iyer PG, Reid BJ, Lagergren J, Shaheen NJ, Vaughan TL, MacGregor S, Love S, Palles C, Tomlinson I, Gockel I, May A, Gerges C, Anders M, Böhmer AC, Becker J, Kreuser N, Thieme R, Noder T, Venerito M, Veits L, Schmidt T, Schmidt C, Izbicki JR, Hölscher AH, Lang H, Lorenz D, Schumacher B, Mayershofer R, Vashist Y, Ott K, Vieth M, Weismüller J, Nöthen MM, Moebus S, Knapp M, Peters WHM, Neuhaus H, Rösch T, Ell C, Jankowski J, Schumacher J, Neale RE, Whiteman DC, Thrift AP.

Clin Gastroenterol Hepatol. 2019 Oct;17(11):2227-2235.e1. doi: 10.1016/j.cgh.2019.01.041. Epub 2019 Feb 1.


Organic Carbon Amendments Affect the Chemodiversity of Soil Dissolved Organic Matter and Its Associations with Soil Microbial Communities.

Li XM, Chen QL, He C, Shi Q, Chen SC, Reid BJ, Zhu YG, Sun GX.

Environ Sci Technol. 2019 Jan 2;53(1):50-59. doi: 10.1021/acs.est.8b04673. Epub 2018 Dec 11.


Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett's Esophagus.

Dong J, Levine DM, Buas MF, Zhang R, Onstad L, Fitzgerald RC; Stomach and Oesophageal Cancer Study (SOCS) Consortium, Corley DA, Shaheen NJ, Lagergren J, Hardie LJ, Reid BJ, Iyer PG, Risch HA, Caldas C, Caldas I, Pharoah PD, Liu G, Gammon MD, Chow WH, Bernstein L, Bird NC, Ye W, Wu AH, Anderson LA, MacGregor S, Whiteman DC, Vaughan TL, Thrift AP.

Clin Gastroenterol Hepatol. 2018 Oct;16(10):1598-1606.e4. doi: 10.1016/j.cgh.2018.03.007. Epub 2018 Mar 15.


NSAID use and somatic exomic mutations in Barrett's esophagus.

Galipeau PC, Oman KM, Paulson TG, Sanchez CA, Zhang Q, Marty JA, Delrow JJ, Kuhner MK, Vaughan TL, Reid BJ, Li X.

Genome Med. 2018 Feb 27;10(1):17. doi: 10.1186/s13073-018-0520-y. Erratum in: Genome Med. 2019 Mar 12;11(1):14.


Evolution of Barrett's esophagus through space and time at single-crypt and whole-biopsy levels.

Martinez P, Mallo D, Paulson TG, Li X, Sanchez CA, Reid BJ, Graham TA, Kuhner MK, Maley CC.

Nat Commun. 2018 Feb 23;9(1):794. doi: 10.1038/s41467-017-02621-x.


Potential for natural and enhanced attenuation of sulphanilamide in a contaminated chalk aquifer.

Bennett KA, Kelly SD, Tang X, Reid BJ.

J Environ Sci (China). 2017 Dec;62:39-48. doi: 10.1016/j.jes.2017.08.010. Epub 2017 Aug 30.


Quantification of Multiple Tumor Clones Using Gene Array and Sequencing Data.

Cheng Y, Dai JY, Paulson TG, Wang X, Li X, Reid BJ, Kooperberg C.

Ann Appl Stat. 2017 Jun;11(2):967-991. doi: 10.1214/17-AOAS1026. Epub 2017 Jul 20.


Determining Risk of Barrett's Esophagus and Esophageal Adenocarcinoma Based on Epidemiologic Factors and Genetic Variants.

Dong J, Buas MF, Gharahkhani P, Kendall BJ, Onstad L, Zhao S, Anderson LA, Wu AH, Ye W, Bird NC, Bernstein L, Chow WH, Gammon MD, Liu G, Caldas C, Pharoah PD, Risch HA, Iyer PG, Reid BJ, Hardie LJ, Lagergren J, Shaheen NJ, Corley DA, Fitzgerald RC; Stomach and Oesophageal Cancer Study (SOCS) consortium, Whiteman DC, Vaughan TL, Thrift AP.

Gastroenterology. 2018 Apr;154(5):1273-1281.e3. doi: 10.1053/j.gastro.2017.12.003. Epub 2017 Dec 13.


Early Diagnosis of Gastroesophageal Cancers and the Cytosponge: A Work in Progress.

Fitzgerald RC, Reid BJ.

Cell Mol Gastroenterol Hepatol. 2017 Aug 14;4(3):447. doi: 10.1016/j.jcmgh.2017.07.004. eCollection 2017 Nov. No abstract available.


Enhanced biodegradation of PAHs in historically contaminated soil by M. gilvum inoculated biochar.

Xiong B, Zhang Y, Hou Y, Arp HPH, Reid BJ, Cai C.

Chemosphere. 2017 Sep;182:316-324. doi: 10.1016/j.chemosphere.2017.05.020. Epub 2017 May 5.


Genomics, Endoscopy, and Control of Gastroesophageal Cancers: A Perspective.

Reid BJ.

Cell Mol Gastroenterol Hepatol. 2017 Feb 20;3(3):359-366. doi: 10.1016/j.jcmgh.2017.02.005. eCollection 2017 May. Review.


A review of source tracking techniques for fine sediment within a catchment.

Guan Z, Tang XY, Yang JE, Ok YS, Xu Z, Nishimura T, Reid BJ.

Environ Geochem Health. 2017 Dec;39(6):1221-1243. doi: 10.1007/s10653-017-9959-9. Epub 2017 Apr 28. Review.


Optimizing Peri-URban Ecosystems (PURE) to re-couple urban-rural symbiosis.

Zhu YG, Reid BJ, Meharg AA, Banwart SA, Fu BJ.

Sci Total Environ. 2017 May 15;586:1085-1090. doi: 10.1016/j.scitotenv.2017.02.094. Epub 2017 Feb 15. Review.


Candidate serum metabolite biomarkers for differentiating gastroesophageal reflux disease, Barrett's esophagus, and high-grade dysplasia/esophageal adenocarcinoma.

Buas MF, Gu H, Djukovic D, Zhu J, Onstad L, Reid BJ, Raftery D, Vaughan TL.

Metabolomics. 2017 Mar;13(3). pii: 23. doi: 10.1007/s11306-016-1154-y. Epub 2017 Jan 20.


Mitigating cadmium accumulation in greenhouse lettuce production using biochar.

Zheng R, Sun G, Li C, Reid BJ, Xie Z, Zhang B, Wang Q.

Environ Sci Pollut Res Int. 2017 Mar;24(7):6532-6542. doi: 10.1007/s11356-016-8282-9. Epub 2017 Jan 10.


Modest amendment of sewage sludge biochar to reduce the accumulation of cadmium into rice(Oryza sativa L.): A field study.

Zhang Y, Chen T, Liao Y, Reid BJ, Chi H, Hou Y, Cai C.

Environ Pollut. 2016 Sep;216:819-825. doi: 10.1016/j.envpol.2016.06.053. Epub 2016 Jun 28.


Surrogate Markers: Lessons from the Next Gen?

Reid BJ.

Cancer Prev Res (Phila). 2016 Jul;9(7):512-7. doi: 10.1158/1940-6207.CAPR-16-0059. Epub 2016 May 2.


Adsorption of linear alkylbenzene sulfonates on carboxyl modified multi-walled carbon nanotubes.

Guan Z, Tang XY, Nishimura T, Huang YM, Reid BJ.

J Hazard Mater. 2017 Jan 15;322(Pt A):205-214. doi: 10.1016/j.jhazmat.2016.02.067. Epub 2016 Mar 2.


Limitations of the Driver/Passenger Model in Cancer Prevention.

Kuhner MK, Kostadinov R, Reid BJ.

Cancer Prev Res (Phila). 2016 May;9(5):335-8. doi: 10.1158/1940-6207.CAPR-15-0343. Epub 2016 Mar 1.


Forty-five years of cell-cycle genetics.

Reid BJ, Culotti JG, Nash RS, Pringle JR.

Mol Biol Cell. 2015 Dec 1;26(24):4307-12. doi: 10.1091/mbc.E14-10-1484.


Widespread Natural Occurrence of Hydroxyurea in Animals.

Fraser DI, Liu KT, Reid BJ, Hawkins E, Sevier A, Pyle M, Robinson JW, Ouellette PH, Ballantyne JS.

PLoS One. 2015 Nov 24;10(11):e0142890. doi: 10.1371/journal.pone.0142890. eCollection 2015.


Research Needs for Understanding the Biology of Overdiagnosis in Cancer Screening.

Srivastava S, Reid BJ, Ghosh S, Kramer BS.

J Cell Physiol. 2016 Sep;231(9):1870-5. doi: 10.1002/jcp.25227. Epub 2016 Apr 29. Review.


Polymorphisms in Genes of Relevance for Oestrogen and Oxytocin Pathways and Risk of Barrett's Oesophagus and Oesophageal Adenocarcinoma: A Pooled Analysis from the BEACON Consortium.

Lagergren K, Ek WE, Levine D, Chow WH, Bernstein L, Casson AG, Risch HA, Shaheen NJ, Bird NC, Reid BJ, Corley DA, Hardie LJ, Wu AH, Fitzgerald RC, Pharoah P, Caldas C, Romero Y, Vaughan TL, MacGregor S, Whiteman D, Westberg L, Nyren O, Lagergren J.

PLoS One. 2015 Sep 25;10(9):e0138738. doi: 10.1371/journal.pone.0138738. eCollection 2015.


Obesity and inflammation markers in relation to leukocyte telomere length in a cross-sectional study of persons with Barrett's esophagus.

Hardikar S, Song X, Risques RA, Montine TJ, Duggan C, Blount PL, Reid BJ, Anderson GL, Kratz M, White E, Vaughan TL.

BMC Obes. 2015 Sep 10;2:32. doi: 10.1186/s40608-015-0063-3. eCollection 2015.


A newly identified susceptibility locus near FOXP1 modifies the association of gastroesophageal reflux with Barrett's esophagus.

Dai JY, de Dieu Tapsoba J, Buas MF, Onstad LE, Levine DM, Risch HA, Chow WH, Bernstein L, Ye W, Lagergren J, Bird NC, Corley DA, Shaheen NJ, Wu AH, Reid BJ, Hardie LJ, Whiteman DC, Vaughan TL.

Cancer Epidemiol Biomarkers Prev. 2015 Nov;24(11):1739-47. doi: 10.1158/1055-9965.EPI-15-0507. Epub 2015 Sep 16.


High Goblet Cell Count Is Inversely Associated with Ploidy Abnormalities and Risk of Adenocarcinoma in Barrett's Esophagus.

Srivastava A, Golden KL, Sanchez CA, Liu K, Fong PY, Li X, Cowan DS, Rabinovitch PS, Reid BJ, Blount PL, Odze RD.

PLoS One. 2015 Jul 31;10(7):e0133403. doi: 10.1371/journal.pone.0133403. eCollection 2015.


Genetic Insights in Barrett's Esophagus and Esophageal Adenocarcinoma.

Reid BJ, Paulson TG, Li X.

Gastroenterology. 2015 Oct;149(5):1142-1152.e3. doi: 10.1053/j.gastro.2015.07.010. Epub 2015 Jul 21. Review.


Assessment of Esophageal Adenocarcinoma Risk Using Somatic Chromosome Alterations in Longitudinal Samples in Barrett's Esophagus.

Li X, Paulson TG, Galipeau PC, Sanchez CA, Liu K, Kuhner MK, Maley CC, Self SG, Vaughan TL, Reid BJ, Blount PL.

Cancer Prev Res (Phila). 2015 Sep;8(9):845-56. doi: 10.1158/1940-6207.CAPR-15-0130. Epub 2015 Jun 30.


Biochar increased water holding capacity but accelerated organic carbon leaching from a sloping farmland soil in China.

Liu C, Wang H, Tang X, Guan Z, Reid BJ, Rajapaksha AU, Ok YS, Sun H.

Environ Sci Pollut Res Int. 2016 Jan;23(2):995-1006. doi: 10.1007/s11356-015-4885-9. Epub 2015 Jun 25.


Bacterial Composition of the Human Upper Gastrointestinal Tract Microbiome Is Dynamic and Associated with Genomic Instability in a Barrett's Esophagus Cohort.

Gall A, Fero J, McCoy C, Claywell BC, Sanchez CA, Blount PL, Li X, Vaughan TL, Matsen FA, Reid BJ, Salama NR.

PLoS One. 2015 Jun 15;10(6):e0129055. doi: 10.1371/journal.pone.0129055. eCollection 2015.


MiRNA-Related SNPs and Risk of Esophageal Adenocarcinoma and Barrett's Esophagus: Post Genome-Wide Association Analysis in the BEACON Consortium.

Buas MF, Onstad L, Levine DM, Risch HA, Chow WH, Liu G, Fitzgerald RC, Bernstein L, Ye W, Bird NC, Romero Y, Casson AG, Corley DA, Shaheen NJ, Wu AH, Gammon MD, Reid BJ, Hardie LJ, Peters U, Whiteman DC, Vaughan TL.

PLoS One. 2015 Jun 3;10(6):e0128617. doi: 10.1371/journal.pone.0128617. eCollection 2015.


Application of sewage sludge and sewage sludge biochar to reduce polycyclic aromatic hydrocarbons (PAH) and potentially toxic elements (PTE) accumulation in tomato.

Waqas M, Li G, Khan S, Shamshad I, Reid BJ, Qamar Z, Chao C.

Environ Sci Pollut Res Int. 2015 Aug;22(16):12114-23. doi: 10.1007/s11356-015-4432-8. Epub 2015 Apr 17.


Mitigating heavy metal accumulation into rice (Oryza sativa L.) using biochar amendment--a field experiment in Hunan, China.

Zheng R, Chen Z, Cai C, Tie B, Liu X, Reid BJ, Huang Q, Lei M, Sun G, Baltrėnaitė E.

Environ Sci Pollut Res Int. 2015 Jul;22(14):11097-108. doi: 10.1007/s11356-015-4268-2. Epub 2015 Mar 22.


Polymorphisms near TBX5 and GDF7 are associated with increased risk for Barrett's esophagus.

Palles C, Chegwidden L, Li X, Findlay JM, Farnham G, Castro Giner F, Peppelenbosch MP, Kovac M, Adams CL, Prenen H, Briggs S, Harrison R, Sanders S, MacDonald D, Haigh C, Tucker A, Love S, Nanji M, deCaestecker J, Ferry D, Rathbone B, Hapeshi J, Barr H, Moayyedi P, Watson P, Zietek B, Maroo N, Gay L, Underwood T, Boulter L, McMurtry H, Monk D, Patel P, Ragunath K, Al Dulaimi D, Murray I, Koss K, Veitch A, Trudgill N, Nwokolo C, Rembacken B, Atherfold P, Green E, Ang Y, Kuipers EJ, Chow W, Paterson S, Kadri S, Beales I, Grimley C, Mullins P, Beckett C, Farrant M, Dixon A, Kelly S, Johnson M, Wajed S, Dhar A, Sawyer E, Roylance R, Onstad L, Gammon MD, Corley DA, Shaheen NJ, Bird NC, Hardie LJ, Reid BJ, Ye W, Liu G, Romero Y, Bernstein L, Wu AH, Casson AG, Fitzgerald R, Whiteman DC, Risch HA, Levine DM, Vaughan TL, Verhaar AP, van den Brande J, Toxopeus EL, Spaander MC, Wijnhoven BP, van der Laan LJ, Krishnadath K, Wijmenga C, Trynka G, McManus R, Reynolds JV, O'Sullivan J, MacMathuna P, McGarrigle SA, Kelleher D, Vermeire S, Cleynen I, Bisschops R, Tomlinson I, Jankowski J.

Gastroenterology. 2015 Feb;148(2):367-78. doi: 10.1053/j.gastro.2014.10.041. Epub 2014 Nov 5.


Integrative post-genome-wide association analysis of CDKN2A and TP53 SNPs and risk of esophageal adenocarcinoma.

Buas MF, Levine DM, Makar KW, Utsugi H, Onstad L, Li X, Galipeau PC, Shaheen NJ, Hardie LJ, Romero Y, Bernstein L, Gammon MD, Casson AG, Bird NC, Risch HA, Ye W, Liu G, Corley DA, Blount PL, Fitzgerald RC, Whiteman DC, Wu AH, Reid BJ, Vaughan TL.

Carcinogenesis. 2014 Dec;35(12):2740-7. doi: 10.1093/carcin/bgu207. Epub 2014 Oct 3.


Obesity and risk of esophageal adenocarcinoma and Barrett's esophagus: a Mendelian randomization study.

Thrift AP, Shaheen NJ, Gammon MD, Bernstein L, Reid BJ, Onstad L, Risch HA, Liu G, Bird NC, Wu AH, Corley DA, Romero Y, Chanock SJ, Chow WH, Casson AG, Levine DM, Zhang R, Ek WE, MacGregor S, Ye W, Hardie LJ, Vaughan TL, Whiteman DC.

J Natl Cancer Inst. 2014 Sep 30;106(11). pii: dju252. doi: 10.1093/jnci/dju252. Print 2014 Nov.


Inflammation and oxidative stress markers and esophageal adenocarcinoma incidence in a Barrett's esophagus cohort.

Hardikar S, Onstad L, Song X, Wilson AM, Montine TJ, Kratz M, Anderson GL, Blount PL, Reid BJ, White E, Vaughan TL.

Cancer Epidemiol Biomarkers Prev. 2014 Nov;23(11):2393-403. doi: 10.1158/1055-9965.EPI-14-0384. Epub 2014 Aug 8.


Intraindividual variability over time in plasma biomarkers of inflammation and effects of long-term storage.

Hardikar S, Song X, Kratz M, Anderson GL, Blount PL, Reid BJ, Vaughan TL, White E.

Cancer Causes Control. 2014 Aug;25(8):969-76. doi: 10.1007/s10552-014-0396-0. Epub 2014 May 17.


Application of biochar to soil reduces cancer risk via rice consumption: a case study in Miaoqian village, Longyan, China.

Khan S, Reid BJ, Li G, Zhu YG.

Environ Int. 2014 Jul;68:154-61. doi: 10.1016/j.envint.2014.03.017. Epub 2014 Apr 14.


Quantification of population benefit in evaluation of biomarkers: practical implications for disease detection and prevention.

Li X, Blount PL, Reid BJ, Vaughan TL.

BMC Med Inform Decis Mak. 2014 Mar 6;14:15. doi: 10.1186/1472-6947-14-15.


Risk of esophageal adenocarcinoma decreases with height, based on consortium analysis and confirmed by Mendelian randomization.

Thrift AP, Risch HA, Onstad L, Shaheen NJ, Casson AG, Bernstein L, Corley DA, Levine DM, Chow WH, Reid BJ, Romero Y, Hardie LJ, Liu G, Wu AH, Bird NC, Gammon MD, Ye W, Whiteman DC, Vaughan TL.

Clin Gastroenterol Hepatol. 2014 Oct;12(10):1667-76.e1. doi: 10.1016/j.cgh.2014.01.039. Epub 2014 Feb 12.


Changing the terminology of cancer--reply.

Esserman LJ, Thompson IM, Reid BJ.

JAMA. 2014 Jan 8;311(2):203. doi: 10.1001/jama.2013.283385. No abstract available.


The effects of sewage sludge and sewage sludge biochar on PAHs and potentially toxic element bioaccumulation in Cucumis sativa L.

Waqas M, Khan S, Qing H, Reid BJ, Chao C.

Chemosphere. 2014 Jun;105:53-61. doi: 10.1016/j.chemosphere.2013.11.064. Epub 2013 Dec 19.


Feasibility of RNA and DNA extraction from fresh pipelle and archival endometrial tissues for use in gene expression and SNP arrays.

Kissel HD, Paulson TG, Liu K, Li X, Swisher E, Garcia R, Sanchez CA, Reid BJ, Reed SD, Doherty JA.

Obstet Gynecol Int. 2013;2013:576842. doi: 10.1155/2013/576842. Epub 2013 Oct 26.


Temporal and spatial evolution of somatic chromosomal alterations: a case-cohort study of Barrett's esophagus.

Li X, Galipeau PC, Paulson TG, Sanchez CA, Arnaudo J, Liu K, Sather CL, Kostadinov RL, Odze RD, Kuhner MK, Maley CC, Self SG, Vaughan TL, Blount PL, Reid BJ.

Cancer Prev Res (Phila). 2014 Jan;7(1):114-27. doi: 10.1158/1940-6207.CAPR-13-0289. Epub 2013 Nov 19.


Germline genetic contributions to risk for esophageal adenocarcinoma, Barrett's esophagus, and gastroesophageal reflux.

Ek WE, Levine DM, D'Amato M, Pedersen NL, Magnusson PK, Bresso F, Onstad LE, Schmidt PT, Törnblom H, Nordenstedt H, Romero Y; Mayo Clinic Esophageal Adenocarcinoma and Barrett’s Esophagus Registry Consortium, Chow WH, Murray LJ, Gammon MD, Liu G, Bernstein L, Casson AG, Risch HA, Shaheen NJ, Bird NC, Reid BJ, Corley DA, Hardie LJ, Ye W, Wu AH, Zucchelli M, Spector TD, Hysi P, Vaughan TL, Whiteman DC, MacGregor S; BEACON study investigators.

J Natl Cancer Inst. 2013 Nov 20;105(22):1711-8. doi: 10.1093/jnci/djt303. Epub 2013 Oct 29.


A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett's esophagus.

Levine DM, Ek WE, Zhang R, Liu X, Onstad L, Sather C, Lao-Sirieix P, Gammon MD, Corley DA, Shaheen NJ, Bird NC, Hardie LJ, Murray LJ, Reid BJ, Chow WH, Risch HA, Nyrén O, Ye W, Liu G, Romero Y, Bernstein L, Wu AH, Casson AG, Chanock SJ, Harrington P, Caldas I, Debiram-Beecham I, Caldas C, Hayward NK, Pharoah PD, Fitzgerald RC, Macgregor S, Whiteman DC, Vaughan TL.

Nat Genet. 2013 Dec;45(12):1487-93. doi: 10.1038/ng.2796. Epub 2013 Oct 13.


Influence of biochar on isoproturon partitioning and bioaccessibility in soil.

Reid BJ, Pickering FL, Freddo A, Whelan MJ, Coulon F.

Environ Pollut. 2013 Oct;181:44-50. doi: 10.1016/j.envpol.2013.05.042. Epub 2013 Jun 26.


NSAIDs modulate clonal evolution in Barrett's esophagus.

Kostadinov RL, Kuhner MK, Li X, Sanchez CA, Galipeau PC, Paulson TG, Sather CL, Srivastava A, Odze RD, Blount PL, Vaughan TL, Reid BJ, Maley CC.

PLoS Genet. 2013 Jun;9(6):e1003553. doi: 10.1371/journal.pgen.1003553. Epub 2013 Jun 13.

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