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Items: 25

1.

A residue of motif III positions the helicase domains of motor subunit HsdR in restriction-modification enzyme EcoR124I.

Sinha D, Bialevich V, Shamayeva K, Guzanova A, Sisakova A, Csefalvay E, Reha D, Krejci L, Carey J, Weiserova M, Ettrich R.

J Mol Model. 2018 Jun 26;24(7):176. doi: 10.1007/s00894-018-3722-8.

PMID:
29943199
2.

Aggregation and metal-complexation behaviour of THPP porphyrin in ethanol/water solutions as function of pH.

Zannotti M, Giovannetti R, Minofar B, Řeha D, Plačková L, D'Amato CA, Rommozzi E, Dudko HV, Kari N, Minicucci M.

Spectrochim Acta A Mol Biomol Spectrosc. 2018 Mar 15;193:235-248. doi: 10.1016/j.saa.2017.12.021. Epub 2017 Dec 7.

PMID:
29247920
3.

Transmembrane helix connectivity in Orai1 controls two gates for calcium-dependent transcription.

Frischauf I, Litviňuková M, Schober R, Zayats V, Svobodová B, Bonhenry D, Lunz V, Cappello S, Tociu L, Reha D, Stallinger A, Hochreiter A, Pammer T, Butorac C, Muik M, Groschner K, Bogeski I, Ettrich RH, Romanin C, Schindl R.

Sci Signal. 2017 Nov 28;10(507). pii: eaao0358. doi: 10.1126/scisignal.aao0358.

4.

Theoretical and experimental study of the antifreeze protein AFP752, trehalose and dimethyl sulfoxide cryoprotection mechanism: correlation with cryopreserved cell viability.

Kratochvílová I, Golan M, Pomeisl K, Richter J, Sedláková S, Šebera J, Mičová J, Falk M, Falková I, Řeha D, Elliott KW, Varga K, Follett SE, Šimek D.

RSC Adv. 2017;7(1):352-360. doi: 10.1039/C6RA25095E. Epub 2016 Dec 23.

5.

The mechanism of the glycosylase reaction with hOGG1 base-excision repair enzyme: concerted effect of Lys249 and Asp268 during excision of 8-oxoguanine.

Šebera J, Hattori Y, Sato D, Reha D, Nencka R, Kohno T, Kojima C, Tanaka Y, Sychrovský V.

Nucleic Acids Res. 2017 May 19;45(9):5231-5242. doi: 10.1093/nar/gkx157.

6.

The helical domain of the EcoR124I motor subunit participates in ATPase activity and dsDNA translocation.

Bialevich V, Sinha D, Shamayeva K, Guzanova A, Řeha D, Csefalvay E, Carey J, Weiserova M, Ettrich RH.

PeerJ. 2017 Jan 18;5:e2887. doi: 10.7717/peerj.2887. eCollection 2017.

7.

Quantum Calculations Indicate Effective Electron Transfer between FMN and Benzoquinone in a New Crystal Structure of Escherichia coli WrbA.

Degtjarik O, Brynda J, Ettrichova O, Kuty M, Sinha D, Kuta Smatanova I, Carey J, Ettrich R, Řeha D.

J Phys Chem B. 2016 Jun 9;120(22):4867-77. doi: 10.1021/acs.jpcb.5b11958. Epub 2016 May 31.

PMID:
27183467
8.

Influence of ligand binding on structure and thermostability of human α1-acid glycoprotein.

Kopecký V Jr, Ettrich R, Pazderka T, Hofbauerová K, Řeha D, Baumruk V.

J Mol Recognit. 2016 Feb;29(2):70-9. doi: 10.1002/jmr.2496. Epub 2015 Sep 24.

PMID:
26400697
9.

Molecular dynamics comparison of E. coli WrbA apoprotein and holoprotein.

Reha D, Harish B, Sinha D, Kukacka Z, McSally J, Ettrichova O, Novak P, Carey J, Ettrich R.

J Mol Model. 2014 Sep;20(9):2400. doi: 10.1007/s00894-014-2400-8. Epub 2014 Aug 26.

PMID:
25152065
10.

Interdomain communication in the endonuclease/motor subunit of type I restriction-modification enzyme EcoR124I.

Sinha D, Shamayeva K, Ramasubramani V, Řeha D, Bialevich V, Khabiri M, Guzanová A, Milbar N, Weiserová M, Csefalvay E, Carey J, Ettrich R.

J Mol Model. 2014 Jul;20(7):2334. doi: 10.1007/s00894-014-2334-1. Epub 2014 Jun 28.

PMID:
24972799
11.

Binding-competent states for L-arginine in E. coli arginine repressor apoprotein.

Pandey SK, Řeha D, Zayats V, Melichercik M, Carey J, Ettrich R.

J Mol Model. 2014 Jul;20(7):2330. doi: 10.1007/s00894-014-2330-5. Epub 2014 Jun 21.

PMID:
24952066
12.

1.2 Å resolution crystal structure of Escherichia coli WrbA holoprotein.

Kishko I, Carey J, Reha D, Brynda J, Winkler R, Harish B, Guerra R, Ettrichova O, Kukacka Z, Sheryemyetyeva O, Novak P, Kuty M, Kuta Smatanova I, Ettrich R, Lapkouski M.

Acta Crystallogr D Biol Crystallogr. 2013 Sep;69(Pt 9):1748-57. doi: 10.1107/S0907444913017162. Epub 2013 Aug 15.

PMID:
23999298
13.

Biphasic kinetic behavior of E. coli WrbA, an FMN-dependent NAD(P)H:quinone oxidoreductase.

Kishko I, Harish B, Zayats V, Reha D, Tenner B, Beri D, Gustavsson T, Ettrich R, Carey J.

PLoS One. 2012;7(8):e43902. doi: 10.1371/journal.pone.0043902. Epub 2012 Aug 29.

14.

An in silico design for a DNA nanomechanical switch.

Řeha D, Voityuk AA, Harris SA.

ACS Nano. 2010 Oct 26;4(10):5737-42. doi: 10.1021/nn1014038.

PMID:
20828145
15.

Theoretical study of the stability of the DNA duplexes modified by a series of hydrophobic base analogues.

Zendlová L, Reha D, Hocek M, Hobza P.

Chemistry. 2009 Aug 3;15(31):7601-10. doi: 10.1002/chem.200802170.

PMID:
19569131
16.

A multi-scale method for the calculation of charge transfer rates through the Pi-stack of DNA: application to DNA dynamics.

Reha D, Barford W, Harris S.

Phys Chem Chem Phys. 2008 Sep 21;10(35):5436-44. doi: 10.1039/b719619a. Epub 2008 Jul 3.

PMID:
18766241
17.

Potential-energy and free-energy surfaces of glycyl-phenylalanyl-alanine (GFA) tripeptide: experiment and theory.

Valdes H, Spiwok V, Rezac J, Reha D, Abo-Riziq AG, de Vries MS, Hobza P.

Chemistry. 2008;14(16):4886-98. doi: 10.1002/chem.200800085.

PMID:
18421727
21.

Structure and IR spectrum of phenylalanyl-glycyl-glycine tripetide in the gas-phase: IR/UV experiments, ab initio quantum chemical calculations, and molecular dynamic simulations.

Reha D, Valdés H, Vondrásek J, Hobza P, Abu-Riziq A, Crews B, de Vries MS.

Chemistry. 2005 Nov 18;11(23):6803-17.

PMID:
16092140
22.
23.

Racemization barriers of 1,1'-binaphthyl and 1,1'-binaphthalene-2,2'-diol: a DFT study.

Meca L, Reha D, Havlas Z.

J Org Chem. 2003 Jul 11;68(14):5677-80.

PMID:
12839462
24.

Intercalators. 1. Nature of stacking interactions between intercalators (ethidium, daunomycin, ellipticine, and 4',6-diaminide-2-phenylindole) and DNA base pairs. Ab initio quantum chemical, density functional theory, and empirical potential study.

Reha D, Kabelác M, Ryjácek F, Sponer J, Sponer JE, Elstner M, Suhai S, Hobza P.

J Am Chem Soc. 2002 Apr 3;124(13):3366-76. Erratum in: J Am Chem Soc. 2003 May 7;125(18):folllowing 5580.

PMID:
11916422
25.

MSMS Health Education Foundation provides funding for many worthy community-based projects.

Reha D.

Mich Med. 1994 Apr;93(4):22-3. No abstract available.

PMID:
8035704

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