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Items: 1 to 50 of 223

1.

Mobile Affinity Sorbent Chromatography.

Li Z, Kim J, Regnier FE.

Anal Chem. 2018 Feb 6;90(3):1668-1676. doi: 10.1021/acs.analchem.7b03117. Epub 2018 Jan 9.

2.

Proteins and Proteoforms: New Separation Challenges.

Regnier FE, Kim J.

Anal Chem. 2018 Jan 2;90(1):361-373. doi: 10.1021/acs.analchem.7b05007. Epub 2017 Dec 18. Review. No abstract available.

3.

Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma.

Abbatiello SE, Schilling B, Mani DR, Zimmerman LJ, Hall SC, MacLean B, Albertolle M, Allen S, Burgess M, Cusack MP, Gosh M, Hedrick V, Held JM, Inerowicz HD, Jackson A, Keshishian H, Kinsinger CR, Lyssand J, Makowski L, Mesri M, Rodriguez H, Rudnick P, Sadowski P, Sedransk N, Shaddox K, Skates SJ, Kuhn E, Smith D, Whiteaker JR, Whitwell C, Zhang S, Borchers CH, Fisher SJ, Gibson BW, Liebler DC, MacCoss MJ, Neubert TA, Paulovich AG, Regnier FE, Tempst P, Carr SA.

Mol Cell Proteomics. 2015 Sep;14(9):2357-74. doi: 10.1074/mcp.M114.047050. Epub 2015 Feb 18.

4.

Accelerating trypsin digestion: the immobilized enzyme reactor.

Regnier FE, Kim J.

Bioanalysis. 2014;6(19):2685-98. doi: 10.4155/bio.14.216. Review.

PMID:
25411709
5.

Simple, miniaturized blood plasma extraction method.

Kim JH, Woenker T, Adamec J, Regnier FE.

Anal Chem. 2013 Dec 3;85(23):11501-8. doi: 10.1021/ac402735y. Epub 2013 Nov 7.

PMID:
24156552
6.

Disparities between immobilized enzyme and solution based digestion of transferrin with trypsin.

Rivera-Burgos D, Regnier FE.

J Sep Sci. 2013 Feb;36(3):454-60. doi: 10.1002/jssc.201200740. Epub 2012 Dec 26.

PMID:
23281316
7.

Mass-linked immuno-selective assays in targeted proteomics.

Madian AG, Rochelle NS, Regnier FE.

Anal Chem. 2013 Jan 15;85(2):737-48. doi: 10.1021/ac302071k. Epub 2012 Nov 13. Review. No abstract available.

PMID:
22950521
8.

Native protein proteolysis in an immobilized enzyme reactor as a function of temperature.

Rivera-Burgos D, Regnier FE.

Anal Chem. 2012 Aug 21;84(16):7021-8. doi: 10.1021/ac301114m. Epub 2012 Jul 30.

PMID:
22845770
9.

Effect of single amino acid substitution on oxidative modifications of the Parkinson's disease-related protein, DJ-1.

Madian AG, Hindupur J, Hulleman JD, Diaz-Maldonado N, Mishra VR, Guigard E, Kay CM, Rochet JC, Regnier FE.

Mol Cell Proteomics. 2012 Feb;11(2):M111.010892. doi: 10.1074/mcp.M111.010892. Epub 2011 Nov 21.

10.

Determining the effects of antioxidants on oxidative stress induced carbonylation of proteins.

Madian AG, Myracle AD, Diaz-Maldonado N, Rochelle NS, Janle EM, Regnier FE.

Anal Chem. 2011 Dec 15;83(24):9328-36. doi: 10.1021/ac201856g. Epub 2011 Nov 2.

11.

Oxidative stress induced carbonylation in human plasma.

Madian AG, Diaz-Maldonado N, Gao Q, Regnier FE.

J Proteomics. 2011 Oct 19;74(11):2395-416. doi: 10.1016/j.jprot.2011.07.014. Epub 2011 Jul 30.

12.

Differential carbonylation of proteins as a function of in vivo oxidative stress.

Madian AG, Myracle AD, Diaz-Maldonado N, Rochelle NS, Janle EM, Regnier FE.

J Proteome Res. 2011 Sep 2;10(9):3959-72. doi: 10.1021/pr200140x. Epub 2011 Jul 29.

13.

A large, consistent plasma proteomics data set from prospectively collected breast cancer patient and healthy volunteer samples.

Riley CP, Zhang X, Nakshatri H, Schneider B, Regnier FE, Adamec J, Buck C.

J Transl Med. 2011 May 27;9:80. doi: 10.1186/1479-5876-9-80.

14.

Coupling protein complex analysis to peptide based proteomics.

Gao Q, Madian AG, Liu X, Adamec J, Regnier FE.

J Chromatogr A. 2010 Dec 3;1217(49):7661-8. doi: 10.1016/j.chroma.2010.09.071. Epub 2010 Oct 29.

PMID:
21036361
15.

Dynamics of protein damage in yeast frataxin mutant exposed to oxidative stress.

Kim JH, Sedlak M, Gao Q, Riley CP, Regnier FE, Adamec J.

OMICS. 2010 Dec;14(6):689-99. doi: 10.1089/omi.2010.0051. Epub 2010 Oct 20.

16.

Sialylated Lewis x antigen bearing glycoproteins in human plasma.

Cho W, Jung K, Regnier FE.

J Proteome Res. 2010 Nov 5;9(11):5960-8. doi: 10.1021/pr100747p. Epub 2010 Oct 11.

17.

A lectin affinity workflow targeting glycosite-specific, cancer-related carbohydrate structures in trypsin-digested human plasma.

Drake PM, Schilling B, Niles RK, Braten M, Johansen E, Liu H, Lerch M, Sorensen DJ, Li B, Allen S, Hall SC, Witkowska HE, Regnier FE, Gibson BW, Fisher SJ.

Anal Biochem. 2011 Jan 1;408(1):71-85. doi: 10.1016/j.ab.2010.08.010. Epub 2010 Aug 10.

18.

Proteomic identification of carbonylated proteins and their oxidation sites.

Madian AG, Regnier FE.

J Proteome Res. 2010 Aug 6;9(8):3766-80. doi: 10.1021/pr1002609. Review.

19.

Screening antibody and immunosorbent selectivity by two-dimensional liquid chromatography-MS/MS (2-D LC-MS/MS).

Cho W, Jung K, Regnier FE.

J Sep Sci. 2010 Jun;33(10):1438-47. doi: 10.1002/jssc.200900860.

PMID:
20405482
20.

Multi-dimensional liquid chromatography in proteomics--a review.

Zhang X, Fang A, Riley CP, Wang M, Regnier FE, Buck C.

Anal Chim Acta. 2010 Apr 7;664(2):101-13. doi: 10.1016/j.aca.2010.02.001. Epub 2010 Feb 6. Review.

21.

Profiling carbonylated proteins in human plasma.

Madian AG, Regnier FE.

J Proteome Res. 2010 Mar 5;9(3):1330-43. doi: 10.1021/pr900890k.

PMID:
20121119
22.

Analytical validation of protein-based multiplex assays: a workshop report by the NCI-FDA interagency oncology task force on molecular diagnostics.

Rodriguez H, Tezak Z, Mesri M, Carr SA, Liebler DC, Fisher SJ, Tempst P, Hiltke T, Kessler LG, Kinsinger CR, Philip R, Ransohoff DF, Skates SJ, Regnier FE, Anderson NL, Mansfield E; Workshop Participants.

Clin Chem. 2010 Feb;56(2):237-43. doi: 10.1373/clinchem.2009.136416. Epub 2009 Dec 10. Review.

23.

Protein-based multiplex assays: mock presubmissions to the US Food and Drug Administration.

Regnier FE, Skates SJ, Mesri M, Rodriguez H, Tezak Z, Kondratovich MV, Alterman MA, Levin JD, Roscoe D, Reilly E, Callaghan J, Kelm K, Brown D, Philip R, Carr SA, Liebler DC, Fisher SJ, Tempst P, Hiltke T, Kessler LG, Kinsinger CR, Ransohoff DF, Mansfield E, Anderson NL.

Clin Chem. 2010 Feb;56(2):165-71. doi: 10.1373/clinchem.2009.140087. Epub 2009 Dec 10.

24.

In vitro stable isotope labeling for discovery of novel metabolites by liquid chromatography-mass spectrometry: Confirmation of gamma-tocopherol metabolism in human A549 cell.

Yang WC, Regnier FE, Jiang Q, Adamec J.

J Chromatogr A. 2010 Jan 29;1217(5):667-75. doi: 10.1016/j.chroma.2009.12.002. Epub 2009 Dec 4.

25.

Sweetening the pot: adding glycosylation to the biomarker discovery equation.

Drake PM, Cho W, Li B, Prakobphol A, Johansen E, Anderson NL, Regnier FE, Gibson BW, Fisher SJ.

Clin Chem. 2010 Feb;56(2):223-36. doi: 10.1373/clinchem.2009.136333. Epub 2009 Dec 3. Review.

26.

Oxidative stress studies in yeast with a frataxin mutant: a proteomics perspective.

Kim JH, Sedlak M, Gao Q, Riley CP, Regnier FE, Adamec J.

J Proteome Res. 2010 Feb 5;9(2):730-6. doi: 10.1021/pr900538e.

PMID:
19957947
27.

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry.

Tabb DL, Vega-Montoto L, Rudnick PA, Variyath AM, Ham AJ, Bunk DM, Kilpatrick LE, Billheimer DD, Blackman RK, Cardasis HL, Carr SA, Clauser KR, Jaffe JD, Kowalski KA, Neubert TA, Regnier FE, Schilling B, Tegeler TJ, Wang M, Wang P, Whiteaker JR, Zimmerman LJ, Fisher SJ, Gibson BW, Kinsinger CR, Mesri M, Rodriguez H, Stein SE, Tempst P, Paulovich AG, Liebler DC, Spiegelman C.

J Proteome Res. 2010 Feb 5;9(2):761-76. doi: 10.1021/pr9006365.

28.

Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.

Paulovich AG, Billheimer D, Ham AJ, Vega-Montoto L, Rudnick PA, Tabb DL, Wang P, Blackman RK, Bunk DM, Cardasis HL, Clauser KR, Kinsinger CR, Schilling B, Tegeler TJ, Variyath AM, Wang M, Whiteaker JR, Zimmerman LJ, Fenyo D, Carr SA, Fisher SJ, Gibson BW, Mesri M, Neubert TA, Regnier FE, Rodriguez H, Spiegelman C, Stein SE, Tempst P, Liebler DC.

Mol Cell Proteomics. 2010 Feb;9(2):242-54. doi: 10.1074/mcp.M900222-MCP200. Epub 2009 Oct 26.

29.

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses.

Rudnick PA, Clauser KR, Kilpatrick LE, Tchekhovskoi DV, Neta P, Blonder N, Billheimer DD, Blackman RK, Bunk DM, Cardasis HL, Ham AJ, Jaffe JD, Kinsinger CR, Mesri M, Neubert TA, Schilling B, Tabb DL, Tegeler TJ, Vega-Montoto L, Variyath AM, Wang M, Wang P, Whiteaker JR, Zimmerman LJ, Carr SA, Fisher SJ, Gibson BW, Paulovich AG, Regnier FE, Rodriguez H, Spiegelman C, Tempst P, Liebler DC, Stein SE.

Mol Cell Proteomics. 2010 Feb;9(2):225-41. doi: 10.1074/mcp.M900223-MCP200. Epub 2009 Oct 16.

30.

A lectin HPLC method to enrich selectively-glycosylated peptides from complex biological samples.

Johansen E, Schilling B, Lerch M, Niles RK, Liu H, Li B, Allen S, Hall SC, Witkowska HE, Regnier FE, Gibson BW, Fisher SJ, Drake PM.

J Vis Exp. 2009 Oct 1;(32). pii: 1398. doi: 10.3791/1398.

31.

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma.

Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham AJ, Keshishian H, Hall SC, Allen S, Blackman RK, Borchers CH, Buck C, Cardasis HL, Cusack MP, Dodder NG, Gibson BW, Held JM, Hiltke T, Jackson A, Johansen EB, Kinsinger CR, Li J, Mesri M, Neubert TA, Niles RK, Pulsipher TC, Ransohoff D, Rodriguez H, Rudnick PA, Smith D, Tabb DL, Tegeler TJ, Variyath AM, Vega-Montoto LJ, Wahlander A, Waldemarson S, Wang M, Whiteaker JR, Zhao L, Anderson NL, Fisher SJ, Liebler DC, Paulovich AG, Regnier FE, Tempst P, Carr SA.

Nat Biotechnol. 2009 Jul;27(7):633-41. doi: 10.1038/nbt.1546. Epub 2009 Jun 28. Erratum in: Nat Biotechnol. 2009 Sep;27(9):864.

32.

Glycoproteomic profiling of serum peptides in canine lymphoma and transitional cell carcinoma.

Wilson CR, Regnier FE, Knapp DW, Raskin RE, Andrews DA, Hooser SB.

Vet Comp Oncol. 2008 Sep;6(3):171-81. doi: 10.1111/j.1476-5829.2008.00158.x.

PMID:
19178677
33.

Glycoproteomics of plasma based on narrow selectivity lectin affinity chromatography.

Jung K, Cho W, Regnier FE.

J Proteome Res. 2009 Feb;8(2):643-50. doi: 10.1021/pr8007495.

PMID:
19099503
34.
35.

Simultaneous quantification of metabolites involved in central carbon and energy metabolism using reversed-phase liquid chromatography-mass spectrometry and in vitro 13C labeling.

Yang WC, Sedlak M, Regnier FE, Mosier N, Ho N, Adamec J.

Anal Chem. 2008 Dec 15;80(24):9508-16. doi: 10.1021/ac801693c.

PMID:
19007244
36.

Stable isotope-coded quaternization for comparative quantification of estrogen metabolites by high-performance liquid chromatography-electrospray ionization mass spectrometry.

Yang WC, Regnier FE, Sliva D, Adamec J.

J Chromatogr B Analyt Technol Biomed Life Sci. 2008 Jul 15;870(2):233-40. doi: 10.1016/j.jchromb.2008.06.026. Epub 2008 Jun 20.

37.

Use of glycan targeting antibodies to identify cancer-associated glycoproteins in plasma of breast cancer patients.

Cho W, Jung K, Regnier FE.

Anal Chem. 2008 Jul 15;80(14):5286-92. doi: 10.1021/ac8008675. Epub 2008 Jun 18.

PMID:
18558770
38.

Two-dimensional correlation optimized warping algorithm for aligning GC x GC-MS data.

Zhang D, Huang X, Regnier FE, Zhang M.

Anal Chem. 2008 Apr 15;80(8):2664-71. doi: 10.1021/ac7024317. Epub 2008 Mar 20.

PMID:
18351753
39.

Comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry peak sorting algorithm.

Oh C, Huang X, Regnier FE, Buck C, Zhang X.

J Chromatogr A. 2008 Feb 1;1179(2):205-15. Epub 2007 Dec 3.

40.
41.

Adaptive interferometry of protein on a BioCD.

Peng L, Varma MM, Cho W, Regnier FE, Nolte DD.

Appl Opt. 2007 Aug 1;46(22):5384-95.

PMID:
17676154
42.

Enhancement of the LC/MS analysis of fatty acids through derivatization and stable isotope coding.

Yang WC, Adamec J, Regnier FE.

Anal Chem. 2007 Jul 15;79(14):5150-7. Epub 2007 May 11.

PMID:
17492837
43.
44.

Destabilization of DJ-1 by familial substitution and oxidative modifications: implications for Parkinson's disease.

Hulleman JD, Mirzaei H, Guigard E, Taylor KL, Ray SS, Kay CM, Regnier FE, Rochet JC.

Biochemistry. 2007 May 15;46(19):5776-89. Epub 2007 Apr 24.

PMID:
17451229
45.

Neural network prediction of peptide separation in strong anion exchange chromatography.

Oh C, Zak SH, Mirzaei H, Buck C, Regnier FE, Zhang X.

Bioinformatics. 2007 Jan 1;23(1):114-8. Epub 2006 Nov 8.

PMID:
17092987
46.
47.
48.

Enhancement of amino acid detection and quantification by electrospray ionization mass spectrometry.

Yang WC, Mirzaei H, Liu X, Regnier FE.

Anal Chem. 2006 Jul 1;78(13):4702-8.

PMID:
16808485
49.

Primary amine coding as a path to comparative proteomics.

Regnier FE, Julka S.

Proteomics. 2006 Jul;6(14):3968-79. Review.

PMID:
16800033
50.

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