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Structure and genetics of Escherichia coli O antigens.

Liu B, Furevi A, Perepelov AV, Guo X, Cao H, Wang Q, Reeves PR, Knirel YA, Wang L, Widmalm G.

FEMS Microbiol Rev. 2019 Nov 28. pii: fuz028. doi: 10.1093/femsre/fuz028. [Epub ahead of print]


Changing Molecular Epidemiology of Vibrio cholerae Outbreaks in Shanghai, China.

Hu D, Yin Z, Yuan C, Yang P, Qian C, Wei Y, Zhang S, Wang Y, Yuan J, Wang M, Reeves PR, Tu L, Chen M, Huang D, Liu B.

mSystems. 2019 Nov 26;4(6). pii: e00561-19. doi: 10.1128/mSystems.00561-19.


Living Trees: High Quality Reproducible and Reusable Construction of Bacterial Phylogenetic Trees.

Hu D, Liu B, Wang L, Reeves PR.

Mol Biol Evol. 2019 Oct 21. pii: msz241. doi: 10.1093/molbev/msz241. [Epub ahead of print]


Two extremely divergent sequence forms of the genes that define Escherichia coli group 3 capsules suggest a very long history since their common ancestor.

Hong Y, Cunneen MM, Reeves PR.

FEMS Microbiol Lett. 2019 Apr 1;366(8). pii: fnz091. doi: 10.1093/femsle/fnz091.


Customizable Cloning of Whole Polysaccharide Gene Clusters by Yeast Homologous Recombination.

Liu MA, Reeves PR.

Methods Mol Biol. 2019;1954:1-14. doi: 10.1007/978-1-4939-9154-9_1.


Wzx flippases exhibiting complex O-unit preferences require a new model for Wzx-substrate interactions.

Liu MA, Morris P, Reeves PR.

Microbiologyopen. 2019 Mar;8(3):e00655. doi: 10.1002/mbo3.655. Epub 2018 Jun 10.


Progress in Our Understanding of Wzx Flippase for Translocation of Bacterial Membrane Lipid-Linked Oligosaccharide.

Hong Y, Liu MA, Reeves PR.

J Bacteriol. 2017 Dec 5;200(1). pii: e00154-17. doi: 10.1128/JB.00154-17. Print 2018 Jan 1. Review.


Genetics and evolution of Yersinia pseudotuberculosis O-specific polysaccharides: a novel pattern of O-antigen diversity.

Kenyon JJ, Cunneen MM, Reeves PR.

FEMS Microbiol Rev. 2017 Mar 1;41(2):200-217. doi: 10.1093/femsre/fux002. Review.


Rapid customised operon assembly by yeast recombinational cloning.

Liu MA, Kenyon JJ, Lee J, Reeves PR.

Appl Microbiol Biotechnol. 2017 Jun;101(11):4569-4580. doi: 10.1007/s00253-017-8213-9. Epub 2017 Mar 21.


Origins of the current seventh cholera pandemic.

Hu D, Liu B, Feng L, Ding P, Guo X, Wang M, Cao B, Reeves PR, Wang L.

Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7730-E7739. Epub 2016 Nov 14.


Model for the Controlled Synthesis of O-Antigen Repeat Units Involving the WaaL Ligase.

Hong Y, Reeves PR.

mSphere. 2015 Dec 30;1(1). pii: e00074-15. doi: 10.1128/mSphere.00074-15. eCollection 2016 Jan-Feb.


Serotype O:8 isolates in the Yersinia pseudotuberculosis complex have different O-antigen gene clusters and produce various forms of rough LPS.

Kenyon JJ, Duda KA, De Felice A, Cunneen MM, Molinaro A, Laitinen J, Skurnik M, Holst O, Reeves PR, De Castro C.

Innate Immun. 2016 Apr;22(3):205-17. doi: 10.1177/1753425916631403. Epub 2016 Feb 11.


Three Wzy polymerases are specific for particular forms of an internal linkage in otherwise identical O units.

Hong Y, Morcilla VA, Liu MA, Russell ELM, Reeves PR.

Microbiology. 2015 Aug;161(8):1639-1647. doi: 10.1099/mic.0.000113. Epub 2015 May 18.


Inefficient translocation of a truncated O unit by a Salmonella Wzx affects both O-antigen production and cell growth.

Liu MA, Stent TL, Hong Y, Reeves PR.

FEMS Microbiol Lett. 2015 May;362(9). pii: fnv053. doi: 10.1093/femsle/fnv053. Epub 2015 Apr 2.


Diversity of o-antigen repeat unit structures can account for the substantial sequence variation of wzx translocases.

Hong Y, Reeves PR.

J Bacteriol. 2014 May;196(9):1713-22. doi: 10.1128/JB.01323-13. Epub 2014 Feb 14.


The Wzy O-antigen polymerase of Yersinia pseudotuberculosis O:2a has a dependence on the Wzz chain-length determinant for efficient polymerization.

Kenyon JJ, Reeves PR.

FEMS Microbiol Lett. 2013 Dec;349(2):163-70. doi: 10.1111/1574-6968.12311. Epub 2013 Nov 6.


Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types.

Pang S, Octavia S, Feng L, Liu B, Reeves PR, Lan R, Wang L.

BMC Genomics. 2013 Oct 20;14:718. doi: 10.1186/1471-2164-14-718.


The WbaK acetyltransferase of Salmonella enterica group E gives insights into O antigen evolution.

Hong Y, Duda KA, Cunneen MM, Holst O, Reeves PR.

Microbiology. 2013 Nov;159(Pt 11):2316-2322. doi: 10.1099/mic.0.069823-0. Epub 2013 Sep 6.


Diversity in the major polysaccharide antigen of Acinetobacter baumannii assessed by DNA sequencing, and development of a molecular serotyping scheme.

Hu D, Liu B, Dijkshoorn L, Wang L, Reeves PR.

PLoS One. 2013 Jul 29;8(7):e70329. doi: 10.1371/journal.pone.0070329. Print 2013.


Genetics and evolution of the Salmonella galactose-initiated set of o antigens.

Reeves PR, Cunneen MM, Liu B, Wang L.

PLoS One. 2013 Jul 18;8(7):e69306. doi: 10.1371/journal.pone.0069306. Print 2013.


Structural diversity in Salmonella O antigens and its genetic basis.

Liu B, Knirel YA, Feng L, Perepelov AV, Senchenkova SN, Reeves PR, Wang L.

FEMS Microbiol Rev. 2014 Jan;38(1):56-89. doi: 10.1111/1574-6976.12034. Epub 2013 Aug 2. Review.


Biosynthesis of UDP-GlcNAc, UndPP-GlcNAc and UDP-GlcNAcA involves three easily distinguished 4-epimerase enzymes, Gne, Gnu and GnaB.

Cunneen MM, Liu B, Wang L, Reeves PR.

PLoS One. 2013 Jun 14;8(6):e67646. doi: 10.1371/journal.pone.0067646. Print 2013.


Population structure and evolution of non-O1/non-O139 Vibrio cholerae by multilocus sequence typing.

Octavia S, Salim A, Kurniawan J, Lam C, Leung Q, Ahsan S, Reeves PR, Nair GB, Lan R.

PLoS One. 2013 Jun 11;8(6):e65342. doi: 10.1371/journal.pone.0065342. Print 2013.


Mutation accumulation and fitness in mutator subpopulations of Escherichia coli.

Maharjan RP, Liu B, Li Y, Reeves PR, Wang L, Ferenci T.

Biol Lett. 2012 Dec 5;9(1):20120961. doi: 10.1098/rsbl.2012.0961. Print 2013 Feb 23.


The O-specific polysaccharide structure and gene cluster of serotype O:12 of the Yersinia pseudotuberculosis complex, and the identification of a novel L-quinovose biosynthesis gene.

De Castro C, Kenyon JJ, Cunneen MM, Molinaro A, Holst O, Skurnik M, Reeves PR.

Glycobiology. 2013 Mar;23(3):346-53. doi: 10.1093/glycob/cws145. Epub 2012 Oct 16.


Characterization of the CDP-D-mannitol biosynthetic pathway in Streptococcus pneumoniae 35A.

Wang Q, Xu Y, Perepelov AV, Knirel YA, Reeves PR, Shashkov AS, Ding P, Guo X, Feng L.

Glycobiology. 2012 Dec;22(12):1760-7. doi: 10.1093/glycob/cws113. Epub 2012 Jul 24.


The multiplicity of divergence mechanisms in a single evolving population.

Maharjan RP, Ferenci T, Reeves PR, Li Y, Liu B, Wang L.

Genome Biol. 2012 Jun 8;13(6):R41. doi: 10.1186/gb-2012-13-6-r41.


Multi-locus variable number tandem repeat analysis of 7th pandemic Vibrio cholerae.

Lam C, Octavia S, Reeves PR, Lan R.

BMC Microbiol. 2012 May 24;12:82. doi: 10.1186/1471-2180-12-82.


The Wzx translocases for Salmonella enterica O-antigen processing have unexpected serotype specificity.

Hong Y, Cunneen MM, Reeves PR.

Mol Microbiol. 2012 May;84(4):620-30. doi: 10.1111/j.1365-2958.2012.08048.x. Epub 2012 Apr 13.


Biochemical characterization of the CDP-D-arabinitol biosynthetic pathway in Streptococcus pneumoniae 17F.

Wang Q, Xu Y, Perepelov AV, Knirel YA, Reeves PR, Shashkov AS, Guo X, Ding P, Feng L.

J Bacteriol. 2012 Apr;194(8):1868-74. doi: 10.1128/JB.06487-11. Epub 2012 Feb 10.


Genetic relationships of phage types and single nucleotide polymorphism typing of Salmonella enterica Serovar Typhimurium.

Pang S, Octavia S, Reeves PR, Wang Q, Gilbert GL, Sintchenko V, Lan R.

J Clin Microbiol. 2012 Mar;50(3):727-34. doi: 10.1128/JCM.01284-11. Epub 2012 Jan 11.


Development of a multiplex PCR assay for detection and genogrouping of Neisseria meningitidis.

Zhu H, Wang Q, Wen L, Xu J, Shao Z, Chen M, Chen M, Reeves PR, Cao B, Wang L.

J Clin Microbiol. 2012 Jan;50(1):46-51. doi: 10.1128/JCM.00918-11. Epub 2011 Nov 16.


Rates of mutation and host transmission for an Escherichia coli clone over 3 years.

Reeves PR, Liu B, Zhou Z, Li D, Guo D, Ren Y, Clabots C, Lan R, Johnson JR, Wang L.

PLoS One. 2011;6(10):e26907. doi: 10.1371/journal.pone.0026907. Epub 2011 Oct 27.


Genetic analysis of the O-antigen gene clusters of Yersinia pseudotuberculosis O:6 and O:7.

Cunneen MM, Pacinelli E, Song WC, Reeves PR.

Glycobiology. 2011 Sep;21(9):1140-6. doi: 10.1093/glycob/cwr010. Epub 2011 Feb 16.


The genetics and structure of the O-specific polysaccharide of Yersinia pseudotuberculosis serotype O:10 and its relationship with Escherichia coli O111 and Salmonella enterica O35.

Kenyon JJ, De Castro C, Cunneen MM, Reeves PR, Molinaro A, Holst O, Skurnik M.

Glycobiology. 2011 Sep;21(9):1131-9. doi: 10.1093/glycob/cwr006. Epub 2011 Feb 14.


Insight into evolution of Bordetella pertussis from comparative genomic analysis: evidence of vaccine-driven selection.

Octavia S, Maharjan RP, Sintchenko V, Stevenson G, Reeves PR, Gilbert GL, Lan R.

Mol Biol Evol. 2011 Jan;28(1):707-15. doi: 10.1093/molbev/msq245. Epub 2010 Sep 10.


Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation.

Wang L, Spira B, Zhou Z, Feng L, Maharjan RP, Li X, Li F, McKenzie C, Reeves PR, Ferenci T.

Genome Biol Evol. 2010 Jul 16;2:478-87. doi: 10.1093/gbe/evq035.


The variation of O antigens in gram-negative bacteria.

Wang L, Wang Q, Reeves PR.

Subcell Biochem. 2010;53:123-52. doi: 10.1007/978-90-481-9078-2_6.


Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli.

Maharjan R, Zhou Z, Ren Y, Li Y, Gaffé J, Schneider D, McKenzie C, Reeves PR, Ferenci T, Wang L.

J Bacteriol. 2010 Sep;192(17):4517-21. doi: 10.1128/JB.00368-10. Epub 2010 Jun 11.


Genetic characterisation and structural analysis of the O-specific polysaccharide of Yersinia pseudotuberculosis serotype O:1c.

De Castro C, Kenyon JJ, Cunneen MM, Reeves PR, Molinaro A, Holst O, Skurnik M.

Innate Immun. 2011 Apr;17(2):183-90. doi: 10.1177/1753425910364425. Epub 2010 Apr 23.


Bordetella pertussis clones identified by multilocus variable-number tandem-repeat analysis.

Kurniawan J, Maharjan RP, Chan WF, Reeves PR, Sintchenko V, Gilbert GL, Mooi FR, Lan R.

Emerg Infect Dis. 2010 Feb;16(2):297-300. doi: 10.3201/eid1602.081707.


Derivation of Escherichia coli O157:H7 from its O55:H7 precursor.

Zhou Z, Li X, Liu B, Beutin L, Xu J, Ren Y, Feng L, Lan R, Reeves PR, Wang L.

PLoS One. 2010 Jan 14;5(1):e8700. doi: 10.1371/journal.pone.0008700.


The O-specific polysaccharide structure and biosynthetic gene cluster of Yersinia pseudotuberculosis serotype O:11.

Cunneen MM, De Castro C, Kenyon J, Parrilli M, Reeves PR, Molinaro A, Holst O, Skurnik M.

Carbohydr Res. 2009 Aug 17;344(12):1533-40. doi: 10.1016/j.carres.2009.04.030. Epub 2009 May 3.


Population structure, origins and evolution of major Salmonella enterica clones.

Lan R, Reeves PR, Octavia S.

Infect Genet Evol. 2009 Sep;9(5):996-1005. doi: 10.1016/j.meegid.2009.04.011. Epub 2009 Apr 23. Review.


Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12.

Ferenci T, Zhou Z, Betteridge T, Ren Y, Liu Y, Feng L, Reeves PR, Wang L.

J Bacteriol. 2009 Jun;191(12):4025-9. doi: 10.1128/JB.00118-09. Epub 2009 Apr 17.


Rapid and accurate typing of Bordetella pertussis targeting genes encoding acellular vaccine antigens using real time PCR and High Resolution Melt analysis.

Chan WF, Maharjan RP, Reeves PR, Sintchenko V, Gilbert GL, Lan R.

J Microbiol Methods. 2009 Jun;77(3):326-9. doi: 10.1016/j.mimet.2009.03.007. Epub 2009 Mar 31.


A recalibrated molecular clock and independent origins for the cholera pandemic clones.

Feng L, Reeves PR, Lan R, Ren Y, Gao C, Zhou Z, Ren Y, Cheng J, Wang W, Wang J, Qian W, Li D, Wang L.

PLoS One. 2008;3(12):e4053. doi: 10.1371/journal.pone.0004053. Epub 2008 Dec 30.


Importation of the major pilin TcpA gene and frequent recombination drive the divergence of the Vibrio pathogenicity island in Vibrio cholerae.

Tay CY, Reeves PR, Lan R.

FEMS Microbiol Lett. 2008 Dec;289(2):210-8. doi: 10.1111/j.1574-6968.2008.01385.x.


Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencing.

Maharjan RP, Gu C, Reeves PR, Sintchenko V, Gilbert GL, Lan R.

Res Microbiol. 2008 Nov-Dec;159(9-10):602-8. doi: 10.1016/j.resmic.2008.08.004. Epub 2008 Aug 26.


Membrane topology of the Salmonella enterica serovar Typhimurium Group B O-antigen translocase Wzx.

Cunneen MM, Reeves PR.

FEMS Microbiol Lett. 2008 Oct;287(1):76-84. doi: 10.1111/j.1574-6968.2008.01295.x. Epub 2008 Aug 14.

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