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Items: 44

1.

Activation-induced deaminase and its splice variants associate with trisomy 12 in chronic lymphocytic leukemia.

Zaprazna K, Reblova K, Svobodova V, Radova L, Bystry V, Baloun J, Durechova K, Tom N, Loja T, Buresova M, Stranska K, Oltova A, Doubek M, Atchison ML, Trbusek M, Malcikova J, Pospisilova S.

Ann Hematol. 2018 Oct 27. doi: 10.1007/s00277-018-3520-5. [Epub ahead of print]

PMID:
30368590
2.

Lymphoproliferation, immunodeficiency and early-onset inflammatory bowel disease associated with a novel mutation in Caspase 8.

Kanderova V, Grombirikova H, Zentsova I, Reblova K, Klocperk A, Fejtkova M, Bloomfield M, Ravcukova B, Kalina T, Freiberger T, Sediva A.

Haematologica. 2019 Jan;104(1):e32-e34. doi: 10.3324/haematol.2018.201673. Epub 2018 Oct 18. No abstract available.

3.

A novel germline mutation in GP1BA gene N-terminal domain in monoallelic Bernard-Soulier syndrome.

Trizuljak J, Kozubík KS, Radová L, Pešová M, Pál K, Réblová K, Stehlíková O, Smejkal P, Zavřelová J, Pacejka M, Mayer J, Pospíšilová Š, Doubek M.

Platelets. 2018 Dec;29(8):827-833. doi: 10.1080/09537104.2018.1529300. Epub 2018 Oct 17.

PMID:
30332551
4.

C-terminal RUNX1 mutation in familial platelet disorder with predisposition to myeloid malignancies.

Staňo Kozubík K, Radová L, Pešová M, Réblová K, Trizuljak J, Plevová K, Fiamoli V, Gumulec J, Urbánková H, Szotkowski T, Mayer J, Pospíšilová Š, Doubek M.

Int J Hematol. 2018 Dec;108(6):652-657. doi: 10.1007/s12185-018-2514-3. Epub 2018 Aug 6.

PMID:
30083851
5.

Role of Inosine⁻Uracil Base Pairs in the Canonical RNA Duplexes.

Špačková N, Réblová K.

Genes (Basel). 2018 Jun 28;9(7). pii: E324. doi: 10.3390/genes9070324.

6.

Phylogenetic classification and generic delineation of Calyptosphaeria gen. nov., Lentomitella, Spadicoides and Torrentispora (Sordariomycetes).

Réblová M, Miller AN, Réblová K, Štěpánek V.

Stud Mycol. 2018 Mar;89:1-62. doi: 10.1016/j.simyco.2017.11.004. Epub 2017 Dec 6.

7.

DNA mutation motifs in the genes associated with inherited diseases.

Růžička M, Kulhánek P, Radová L, Čechová A, Špačková N, Fajkusová L, Réblová K.

PLoS One. 2017 Aug 2;12(8):e0182377. doi: 10.1371/journal.pone.0182377. eCollection 2017.

8.

Functional and structural characterisation of 5 missense mutations of the phenylalanine hydroxylase.

Pecimonova M, Polak E, Csicsay F, Reblova K, Stojiljkovic M, Levarski Z, Skultety L, Kadasi L, Soltysova A.

Gen Physiol Biophys. 2017 Oct;36(4):361-371. doi: 10.4149/gpb_2017003. Epub 2017 Jun 27.

PMID:
28653649
9.

Label-free chronopotentiometric glycoprofiling of prostate specific antigen using sialic acid recognizing lectins.

Belicky S, Černocká H, Bertok T, Holazova A, Réblová K, Paleček E, Tkac J, Ostatná V.

Bioelectrochemistry. 2017 Oct;117:89-94. doi: 10.1016/j.bioelechem.2017.06.005. Epub 2017 Jun 19.

10.

rRNA C-Loops: Mechanical Properties of a Recurrent Structural Motif.

Dršata T, Réblová K, Beššeová I, Šponer J, Lankaš F.

J Chem Theory Comput. 2017 Jul 11;13(7):3359-3371. doi: 10.1021/acs.jctc.7b00061. Epub 2017 Jun 29.

PMID:
28617589
11.

Functional analysis of the p.(Leu15Pro) and p.(Gly20Arg) sequence changes in the signal sequence of LDL receptor.

Pavloušková J, Réblová K, Tichý L, Freiberger T, Fajkusová L.

Atherosclerosis. 2016 Jul;250:9-14. doi: 10.1016/j.atherosclerosis.2016.04.022. Epub 2016 Apr 27.

PMID:
27175606
12.

Molecular systematics of Barbatosphaeria (Sordariomycetes): multigene phylogeny and secondary ITS structure.

Réblová M, Réblová K, Štěpánek V.

Persoonia. 2015 Dec;35:21-38. doi: 10.3767/003158515X687434. Epub 2015 Feb 2.

13.

Phylogenetic Reconstruction of the Calosphaeriales and Togniniales Using Five Genes and Predicted RNA Secondary Structures of ITS, and Flabellascus tenuirostris gen. et sp. nov.

Réblová M, Jaklitsch WM, Réblová K, Štěpánek V.

PLoS One. 2015 Dec 23;10(12):e0144616. doi: 10.1371/journal.pone.0144616. eCollection 2015.

14.

Autosomal recessive congenital ichthyoses in the Czech Republic.

Bučková H, Nosková H, Borská R, Réblová K, Pinková B, Zapletalová E, Kopečková L, Horký O, Němečková J, Gaillyová R, Nagy Z, Veselý K, Hermanová M, Stehlíková K, Fajkusová L.

Br J Dermatol. 2016 Feb;174(2):405-7. doi: 10.1111/bjd.13918. Epub 2015 Nov 14. No abstract available.

PMID:
25998749
15.

Computational study of missense mutations in phenylalanine hydroxylase.

Réblová K, Kulhánek P, Fajkusová L.

J Mol Model. 2015 Apr;21(4):70. doi: 10.1007/s00894-015-2620-6. Epub 2015 Mar 7.

PMID:
25750018
16.

Wobble pairs of the HDV ribozyme play specific roles in stabilization of active site dynamics.

Sripathi KN, Banáš P, Réblová K, Šponer J, Otyepka M, Walter NG.

Phys Chem Chem Phys. 2015 Feb 28;17(8):5887-900. doi: 10.1039/c4cp05083e.

17.

Role of S-turn2 in the structure, dynamics, and function of mitochondrial ribosomal A-site. A bioinformatics and molecular dynamics simulation study.

Panecka J, Havrila M, Réblová K, Šponer J, Trylska J.

J Phys Chem B. 2014 Jun 19;118(24):6687-701. doi: 10.1021/jp5030685. Epub 2014 Jun 6.

PMID:
24845793
18.

CLCN1 mutations in Czech patients with myotonia congenita, in silico analysis of novel and known mutations in the human dimeric skeletal muscle chloride channel.

Skálová D, Zídková J, Voháňka S, Mazanec R, Mušová Z, Vondráček P, Mrázová L, Kraus J, Réblová K, Fajkusová L.

PLoS One. 2013 Dec 11;8(12):e82549. doi: 10.1371/journal.pone.0082549. eCollection 2013.

19.

Isosteric and nonisosteric base pairs in RNA motifs: molecular dynamics and bioinformatics study of the sarcin-ricin internal loop.

Havrila M, Réblová K, Zirbel CL, Leontis NB, Šponer J.

J Phys Chem B. 2013 Nov 21;117(46):14302-19. doi: 10.1021/jp408530w. Epub 2013 Nov 12.

20.

Novel evolutionary lineages revealed in the Chaetothyriales (fungi) based on multigene phylogenetic analyses and comparison of its secondary structure.

Réblová M, Untereiner WA, Réblová K.

PLoS One. 2013 May 28;8(5):e63547. doi: 10.1371/journal.pone.0063547. Print 2013. Erratum in: PLoS One. 2013;8(11). doi:10.1371/annotation/acfe0686-dd9d-4673-8cc9-3bb9f457a8c4.

21.

Bioinformatics and molecular dynamics simulation study of L1 stalk non-canonical rRNA elements: kink-turns, loops, and tetraloops.

Krepl M, Réblová K, Koča J, Sponer J.

J Phys Chem B. 2013 May 9;117(18):5540-55. doi: 10.1021/jp401482m. Epub 2013 Apr 24.

PMID:
23534440
22.

Hyperphenylalaninemia in the Czech Republic: genotype-phenotype correlations and in silico analysis of novel missense mutations.

Réblová K, Hrubá Z, Procházková D, Pazdírková R, Pouchlá S, Zeman J, Fajkusová L.

Clin Chim Acta. 2013 Apr 18;419:1-10. doi: 10.1016/j.cca.2013.01.006. Epub 2013 Jan 26. Erratum in: Clin Chim Acta. 2013 Nov 15;426:157. Zeman, Jiří [added].

PMID:
23357515
23.

Structure and mechanical properties of the ribosomal L1 stalk three-way junction.

Réblová K, Sponer J, Lankas F.

Nucleic Acids Res. 2012 Jul;40(13):6290-303. doi: 10.1093/nar/gks258. Epub 2012 Mar 26.

24.

A-minor tertiary interactions in RNA kink-turns. Molecular dynamics and quantum chemical analysis.

Réblová K, Šponer JE, Špačková N, Beššeová I, Šponer J.

J Phys Chem B. 2011 Dec 1;115(47):13897-910. doi: 10.1021/jp2065584. Epub 2011 Nov 7.

PMID:
21999672
25.

Understanding RNA Flexibility Using Explicit Solvent Simulations: The Ribosomal and Group I Intron Reverse Kink-Turn Motifs.

Sklenovský P, Florová P, Banáš P, Réblová K, Lankaš F, Otyepka M, Šponer J.

J Chem Theory Comput. 2011 Sep 13;7(9):2963-80. doi: 10.1021/ct200204t. Epub 2011 Aug 5.

PMID:
26605485
26.

An RNA molecular switch: Intrinsic flexibility of 23S rRNA Helices 40 and 68 5'-UAA/5'-GAN internal loops studied by molecular dynamics methods.

Réblová K, Střelcová Z, Kulhánek P, Beššeová I, Mathews DH, Nostrand KV, Yildirim I, Turner DH, Sponer J.

J Chem Theory Comput. 2010 Jan 1;2010(6):910-929.

28.

Molecular dynamics simulations suggest that RNA three-way junctions can act as flexible RNA structural elements in the ribosome.

Besseová I, Réblová K, Leontis NB, Sponer J.

Nucleic Acids Res. 2010 Oct;38(18):6247-64. doi: 10.1093/nar/gkq414. Epub 2010 May 27.

29.

Extensive molecular dynamics simulations showing that canonical G8 and protonated A38H+ forms are most consistent with crystal structures of hairpin ribozyme.

Mlýnský V, Banás P, Hollas D, Réblová K, Walter NG, Sponer J, Otyepka M.

J Phys Chem B. 2010 May 20;114(19):6642-52. doi: 10.1021/jp1001258.

30.

An RNA Molecular Switch: Intrinsic Flexibility of 23S rRNA Helices 40 and 68 5'-UAA/5'-GAN Internal Loops Studied by Molecular Dynamics Methods.

Réblová K, Střelcová Z, Kulhánek P, Beššeová I, Mathews DH, Van Nostrand K, Yildirim I, Turner DH, Šponer J.

J Chem Theory Comput. 2010 Mar 9;6(3):910-29. doi: 10.1021/ct900440t.

PMID:
26613316
31.

Dependence of A-RNA simulations on the choice of the force field and salt strength.

Besseová I, Otyepka M, Réblová K, Sponer J.

Phys Chem Chem Phys. 2009 Dec 7;11(45):10701-11. doi: 10.1039/b911169g. Epub 2009 Sep 24.

PMID:
20145814
32.

Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EM.

Réblová K, Rázga F, Li W, Gao H, Frank J, Sponer J.

Nucleic Acids Res. 2010 Mar;38(4):1325-40. doi: 10.1093/nar/gkp1057. Epub 2009 Dec 1.

33.

Conformational transitions of flanking purines in HIV-1 RNA dimerization initiation site kissing complexes studied by CHARMM explicit solvent molecular dynamics.

Sarzyńska J, Réblová K, Sponer J, Kuliński T.

Biopolymers. 2008 Sep;89(9):732-46. doi: 10.1002/bip.21001.

PMID:
18412127
34.

Conformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by molecular dynamics.

Réblová K, Fadrná E, Sarzynska J, Kulinski T, Kulhánek P, Ennifar E, Koca J, Sponer J.

Biophys J. 2007 Dec 1;93(11):3932-49. Epub 2007 Aug 17.

35.

Leading RNA tertiary interactions: structures, energies, and water insertion of A-minor and P-interactions. A quantum chemical view.

Sponer JE, Réblova K, Mokdad A, Sychrovský V, Leszczynski J, Sponer J.

J Phys Chem B. 2007 Aug 2;111(30):9153-64. Epub 2007 Jun 29.

PMID:
17602515
36.

Trapped water molecules are essential to structural dynamics and function of a ribozyme.

Rhodes MM, Réblová K, Sponer J, Walter NG.

Proc Natl Acad Sci U S A. 2006 Sep 5;103(36):13380-5. Epub 2006 Aug 24.

37.

RNA kink-turns as molecular elbows: hydration, cation binding, and large-scale dynamics.

Rázga F, Zacharias M, Réblová K, Koca J, Sponer J.

Structure. 2006 May;14(5):825-35.

38.

Cations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozyme.

Krasovska MV, Sefcikova J, Réblová K, Schneider B, Walter NG, Sponer J.

Biophys J. 2006 Jul 15;91(2):626-38. Epub 2006 Apr 14.

39.

Structure, dynamics, and elasticity of free 16s rRNA helix 44 studied by molecular dynamics simulations.

Réblová K, Lankas F, Rázga F, Krasovska MV, Koca J, Sponer J.

Biopolymers. 2006 Aug 5;82(5):504-20.

PMID:
16538608
40.

Long-residency hydration, cation binding, and dynamics of loop E/helix IV rRNA-L25 protein complex.

Réblová K, Spacková N, Koca J, Leontis NB, Sponer J.

Biophys J. 2004 Nov;87(5):3397-412. Epub 2004 Aug 31.

41.

Ribosomal RNA kink-turn motif--a flexible molecular hinge.

Rázga F, Spackova N, Réblova K, Koca J, Leontis NB, Sponer J.

J Biomol Struct Dyn. 2004 Oct;22(2):183-94.

PMID:
15317479
42.

Molecular dynamics simulations of RNA kissing-loop motifs reveal structural dynamics and formation of cation-binding pockets.

Réblová K, Spacková N, Sponer JE, Koca J, Sponer J.

Nucleic Acids Res. 2003 Dec 1;31(23):6942-52.

43.

Non-Watson-Crick basepairing and hydration in RNA motifs: molecular dynamics of 5S rRNA loop E.

Réblová K, Spacková N, Stefl R, Csaszar K, Koca J, Leontis NB, Sponer J.

Biophys J. 2003 Jun;84(6):3564-82.

44.

Initiation of apoptosis by photodynamic therapy on MCF7 cells.

Kolacaronova H, Reblova K, Strnad M, Lenobel R.

ScientificWorldJournal. 2001 Nov 6;1:122. doi: 10.1100/tsw.2001.219. eCollection 2001. No abstract available.

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