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Items: 40

1.

An Atlas of Transcription Factors Expressed in Male Pupal Terminalia of Drosophila melanogaster.

Vincent BJ, Rice GR, Wong GM, Glassford WJ, Downs KI, Shastay JL, Charles-Obi K, Natarajan M, Gogol M, Zeitlinger J, Rebeiz M.

G3 (Bethesda). 2019 Oct 16. pii: g3.400788.2019. doi: 10.1534/g3.119.400788. [Epub ahead of print]

2.

A standardized nomenclature and atlas of the male terminalia of Drosophila melanogaster.

Rice G, David JR, Kamimura Y, Masly JP, Mcgregor AP, Nagy O, Noselli S, Nunes MDS, O'Grady P, Sánchez-Herrero E, Siegal ML, Toda MJ, Rebeiz M, Courtier-Orgogozo V, Yassin A.

Fly (Austin). 2019 Aug 19:1-14. doi: 10.1080/19336934.2019.1653733. [Epub ahead of print]

PMID:
31401934
3.

Changes throughout a Genetic Network Mask the Contribution of Hox Gene Evolution.

Liu Y, Ramos-Womack M, Han C, Reilly P, Brackett KL, Rogers W, Williams TM, Andolfatto P, Stern DL, Rebeiz M.

Curr Biol. 2019 Jul 8;29(13):2157-2166.e6. doi: 10.1016/j.cub.2019.05.074. Epub 2019 Jun 27.

PMID:
31257142
4.

Evolution: How Many Phenotypes Do Regulatory Mutations Affect?

Rice G, Rebeiz M.

Curr Biol. 2019 Jan 7;29(1):R21-R23. doi: 10.1016/j.cub.2018.11.027.

PMID:
30620910
5.

From pattern to process: studies at the interface of gene regulatory networks, morphogenesis, and evolution.

Smith SJ, Rebeiz M, Davidson L.

Curr Opin Genet Dev. 2018 Aug;51:103-110. doi: 10.1016/j.gde.2018.08.004. Epub 2018 Oct 1. Review.

6.

Augmentation of a wound response element accompanies the origin of a Hox-regulated Drosophila abdominal pigmentation trait.

Grover S, Williams ME, Kaiser R, Hughes JT, Gresham L, Rebeiz M, Williams TM.

Dev Biol. 2018 Sep 1;441(1):159-175. doi: 10.1016/j.ydbio.2018.07.001. Epub 2018 Jul 4.

7.

Cis-regulatory evolution integrated the Bric-à-brac transcription factors into a novel fruit fly gene regulatory network.

Roeske MJ, Camino EM, Grover S, Rebeiz M, Williams TM.

Elife. 2018 Jan 3;7. pii: e32273. doi: 10.7554/eLife.32273.

8.

Automated tools for comparative sequence analysis of genic regions using the GenePalette application.

Smith AF, Posakony JW, Rebeiz M.

Dev Biol. 2017 Sep 1;429(1):158-164. doi: 10.1016/j.ydbio.2017.06.033. Epub 2017 Jun 30.

9.

Enhancer evolution and the origins of morphological novelty.

Rebeiz M, Tsiantis M.

Curr Opin Genet Dev. 2017 Aug;45:115-123. doi: 10.1016/j.gde.2017.04.006. Epub 2017 May 18. Review.

10.

Using Drosophila pigmentation traits to study the mechanisms of cis-regulatory evolution.

Rebeiz M, Williams TM.

Curr Opin Insect Sci. 2017 Feb;19:1-7. doi: 10.1016/j.cois.2016.10.002. Epub 2016 Oct 8. Review.

11.

The evolutionary origination of a novel expression pattern through an extreme heterochronic shift.

Pham T, Day SM, Glassford WJ, Williams TM, Rebeiz M.

Evol Dev. 2017 Mar;19(2):43-55. doi: 10.1111/ede.12215. Epub 2017 Jan 24.

PMID:
28116844
12.

Genetic Convergence in the Evolution of Male-Specific Color Patterns in Drosophila.

Signor SA, Liu Y, Rebeiz M, Kopp A.

Curr Biol. 2016 Sep 26;26(18):2423-2433. doi: 10.1016/j.cub.2016.07.034. Epub 2016 Aug 18.

13.

Co-option of an Ancestral Hox-Regulated Network Underlies a Recently Evolved Morphological Novelty.

Glassford WJ, Johnson WC, Dall NR, Smith SJ, Liu Y, Boll W, Noll M, Rebeiz M.

Dev Cell. 2015 Sep 14;34(5):520-31. doi: 10.1016/j.devcel.2015.08.005. Epub 2015 Sep 3.

14.

Genetic Changes to a Transcriptional Silencer Element Confers Phenotypic Diversity within and between Drosophila Species.

Johnson WC, Ordway AJ, Watada M, Pruitt JN, Williams TM, Rebeiz M.

PLoS Genet. 2015 Jun 26;11(6):e1005279. doi: 10.1371/journal.pgen.1005279. eCollection 2015 Jun.

15.

Unraveling the Tangled Skein: The Evolution of Transcriptional Regulatory Networks in Development.

Rebeiz M, Patel NH, Hinman VF.

Annu Rev Genomics Hum Genet. 2015;16:103-31. doi: 10.1146/annurev-genom-091212-153423. Epub 2015 May 20. Review.

16.

The evolutionary origination and diversification of a dimorphic gene regulatory network through parallel innovations in cis and trans.

Camino EM, Butts JC, Ordway A, Vellky JE, Rebeiz M, Williams TM.

PLoS Genet. 2015 Apr 2;11(4):e1005136. doi: 10.1371/journal.pgen.1005136. eCollection 2015 Apr.

17.

Neural precursor-specific expression of multiple Drosophila genes is driven by dual enhancer modules with overlapping function.

Miller SW, Rebeiz M, Atanasov JE, Posakony JW.

Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17194-9. doi: 10.1073/pnas.1415308111. Epub 2014 Nov 17.

18.

The expansion of body coloration involves coordinated evolution in cis and trans within the pigmentation regulatory network of Drosophila prostipennis.

Ordway AJ, Hancuch KN, Johnson W, Wiliams TM, Rebeiz M.

Dev Biol. 2014 Aug 15;392(2):431-40. doi: 10.1016/j.ydbio.2014.05.023. Epub 2014 Jun 5.

19.

A survey of the trans-regulatory landscape for Drosophila melanogaster abdominal pigmentation.

Rogers WA, Grover S, Stringer SJ, Parks J, Rebeiz M, Williams TM.

Dev Biol. 2014 Jan 15;385(2):417-32. doi: 10.1016/j.ydbio.2013.11.013. Epub 2013 Nov 20.

20.

The evolution of Bab paralog expression and abdominal pigmentation among Sophophora fruit fly species.

Salomone JR, Rogers WA, Rebeiz M, Williams TM.

Evol Dev. 2013 Nov-Dec;15(6):442-57. doi: 10.1111/ede.12053.

PMID:
24261445
21.

Assessing constraints on the path of regulatory sequence evolution.

Glassford WJ, Rebeiz M.

Philos Trans R Soc Lond B Biol Sci. 2013 Nov 11;368(1632):20130026. doi: 10.1098/rstb.2013.0026. Print 2013 Dec 19.

22.

Recurrent modification of a conserved cis-regulatory element underlies fruit fly pigmentation diversity.

Rogers WA, Salomone JR, Tacy DJ, Camino EM, Davis KA, Rebeiz M, Williams TM.

PLoS Genet. 2013 Aug;9(8):e1003740. doi: 10.1371/journal.pgen.1003740. Epub 2013 Aug 29.

23.

Ancestral and conserved cis-regulatory architectures in developmental control genes.

Rebeiz M, Castro B, Liu F, Yue F, Posakony JW.

Dev Biol. 2012 Feb 15;362(2):282-94. doi: 10.1016/j.ydbio.2011.12.011. Epub 2011 Dec 13.

24.

Experimental approaches to evaluate the contributions of candidate cis-regulatory mutations to phenotypic evolution.

Rebeiz M, Williams TM.

Methods Mol Biol. 2011;772:351-75. doi: 10.1007/978-1-61779-228-1_21. Review.

PMID:
22065449
25.

Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences.

Rebeiz M, Jikomes N, Kassner VA, Carroll SB.

Proc Natl Acad Sci U S A. 2011 Jun 21;108(25):10036-43. doi: 10.1073/pnas.1105937108. Epub 2011 May 18.

26.

Notch regulates numb: integration of conditional and autonomous cell fate specification.

Rebeiz M, Miller SW, Posakony JW.

Development. 2011 Jan;138(2):215-25. doi: 10.1242/dev.050161. Epub 2010 Dec 9.

27.

Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population.

Rebeiz M, Pool JE, Kassner VA, Aquadro CF, Carroll SB.

Science. 2009 Dec 18;326(5960):1663-7. doi: 10.1126/science.1178357.

28.

Evolution of the tan locus contributed to pigment loss in Drosophila santomea: a response to Matute et al.

Rebeiz M, Ramos-Womack M, Jeong S, Andolfatto P, Werner T, True J, Stern DL, Carroll SB.

Cell. 2009 Dec 11;139(6):1189-96. doi: 10.1016/j.cell.2009.11.004.

29.

Perceptions of rape and attitudes toward women in a sample of Lebanese students.

Rebeiz MJ, Harb C.

J Interpers Violence. 2010 Apr;25(4):735-52. doi: 10.1177/0886260509334410. Epub 2009 Jun 3.

PMID:
19494244
30.

The evolution of gene regulation underlies a morphological difference between two Drosophila sister species.

Jeong S, Rebeiz M, Andolfatto P, Werner T, True J, Carroll SB.

Cell. 2008 Mar 7;132(5):783-93. doi: 10.1016/j.cell.2008.01.014.

31.

An ancient transcriptional regulatory linkage.

Rebeiz M, Stone T, Posakony JW.

Dev Biol. 2005 May 15;281(2):299-308.

32.

A 1463 gene cattle-human comparative map with anchor points defined by human genome sequence coordinates.

Everts-van der Wind A, Kata SR, Band MR, Rebeiz M, Larkin DM, Everts RE, Green CA, Liu L, Natarajan S, Goldammer T, Lee JH, McKay S, Womack JE, Lewin HA.

Genome Res. 2004 Jul;14(7):1424-37.

33.
34.

Multi-species comparative mapping in silico using the COMPASS strategy.

Liu L, Gong G, Liu Y, Natarajan S, Larkin DM, Everts-van der Wind A, Rebeiz M, Beever JE.

Bioinformatics. 2004 Jan 22;20(2):148-54.

PMID:
14734304
35.

A cattle-human comparative map built with cattle BAC-ends and human genome sequence.

Larkin DM, Everts-van der Wind A, Rebeiz M, Schweitzer PA, Bachman S, Green C, Wright CL, Campos EJ, Benson LD, Edwards J, Liu L, Osoegawa K, Womack JE, de Jong PJ, Lewin HA.

Genome Res. 2003 Aug;13(8):1966-72.

36.

MHC class I-like genes in cattle, MHCLA, with similarity to genes encoding NK cell stimulatory ligands.

Larson JH, Rebeiz MJ, Stiening CM, Windish RL, Beever JE, Lewin HA.

Immunogenetics. 2003 Apr;55(1):16-22. Epub 2003 Mar 29.

PMID:
12679856
37.
38.

An ordered comparative map of the cattle and human genomes.

Band MR, Larson JH, Rebeiz M, Green CA, Heyen DW, Donovan J, Windish R, Steining C, Mahyuddin P, Womack JE, Lewin HA.

Genome Res. 2000 Sep;10(9):1359-68.

39.

Compass of 47,787 cattle ESTs.

Rebeiz M, Lewin HA.

Anim Biotechnol. 2000 Nov;11(2):75-241.

PMID:
10953882

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