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Items: 1 to 50 of 316

1.

The 3D Genome as a Target for Anticancer Therapy.

Kantidze OL, Gurova KV, Studitsky VM, Razin SV.

Trends Mol Med. 2019 Oct 31. pii: S1471-4914(19)30268-0. doi: 10.1016/j.molmed.2019.09.011. [Epub ahead of print] Review.

PMID:
31679987
2.

C-TALE, a new cost-effective method for targeted enrichment of Hi-C/3C-seq libraries.

Golov AK, Ulianov SV, Luzhin AV, Kalabusheva EP, Kantidze OL, Flyamer IM, Razin SV, Gavrilov AA.

Methods. 2019 Jun 26. pii: S1046-2023(18)30478-X. doi: 10.1016/j.ymeth.2019.06.022. [Epub ahead of print]

PMID:
31252062
3.

Nucleolus: A Central Hub for Nuclear Functions.

Iarovaia OV, Minina EP, Sheval EV, Onichtchouk D, Dokudovskaya S, Razin SV, Vassetzky YS.

Trends Cell Biol. 2019 Aug;29(8):647-659. doi: 10.1016/j.tcb.2019.04.003. Epub 2019 Jun 5. Review.

PMID:
31176528
4.

Hypoosmotic stress induces R loop formation in nucleoli and ATR/ATM-dependent silencing of nucleolar transcription.

Velichko AK, Petrova NV, Luzhin AV, Strelkova OS, Ovsyannikova N, Kireev II, Petrova NV, Razin SV, Kantidze OL.

Nucleic Acids Res. 2019 Jul 26;47(13):6811-6825. doi: 10.1093/nar/gkz436.

5.

The anti-cancer drugs curaxins target spatial genome organization.

Kantidze OL, Luzhin AV, Nizovtseva EV, Safina A, Valieva ME, Golov AK, Velichko AK, Lyubitelev AV, Feofanov AV, Gurova KV, Studitsky VM, Razin SV.

Nat Commun. 2019 Mar 29;10(1):1441. doi: 10.1038/s41467-019-09500-7.

6.

Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila.

Ulianov SV, Doronin SA, Khrameeva EE, Kos PI, Luzhin AV, Starikov SS, Galitsyna AA, Nenasheva VV, Ilyin AA, Flyamer IM, Mikhaleva EA, Logacheva MD, Gelfand MS, Chertovich AV, Gavrilov AA, Razin SV, Shevelyov YY.

Nat Commun. 2019 Mar 12;10(1):1176. doi: 10.1038/s41467-019-09185-y.

7.

[Intersubunit Mobility of the Ribosome].

Finkelstein AV, Razin SV, Spirin AS.

Mol Biol (Mosk). 2018 Nov-Dec;52(6):921-934. doi: 10.1134/S0026898418060083. Review. Russian.

8.

Synthetically Lethal Interactions of ATM, ATR, and DNA-PKcs.

Kantidze OL, Velichko AK, Luzhin AV, Petrova NV, Razin SV.

Trends Cancer. 2018 Nov;4(11):755-768. doi: 10.1016/j.trecan.2018.09.007. Epub 2018 Oct 9. Review.

PMID:
30352678
9.

Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes.

Luzhin AV, Flyamer IM, Khrameeva EE, Ulianov SV, Razin SV, Gavrilov AA.

J Cell Biochem. 2019 Mar;120(3):4494-4503. doi: 10.1002/jcb.27737. Epub 2018 Sep 27.

PMID:
30260021
10.

[Role of the Nucleolus in Rearrangements of the IGH Locus].

Iarovaia OV, Ioudinkova ES, Razin SV, Vassetzky YS.

Mol Biol (Mosk). 2018 Mar-Apr;52(2):210-219. doi: 10.7868/S0026898418020040. Review. Russian.

11.

Genetic and Epigenetic Mechanisms of β-Globin Gene Switching.

Iarovaia OV, Kovina AP, Petrova NV, Razin SV, Ioudinkova ES, Vassetzky YS, Ulianov SV.

Biochemistry (Mosc). 2018 Apr;83(4):381-392. doi: 10.1134/S0006297918040090. Review.

12.

Structural-Functional Domains of the Eukaryotic Genome.

Razin SV, Gavrilov AA.

Biochemistry (Mosc). 2018 Apr;83(4):302-312. doi: 10.1134/S0006297918040028. Review.

13.
14.

Gene functioning and storage within a folded genome.

Razin SV, Ulianov SV.

Cell Mol Biol Lett. 2017 Aug 29;22:18. doi: 10.1186/s11658-017-0050-4. eCollection 2017. Review.

15.

Single-cell Hi-C bridges microscopy and genome-wide sequencing approaches to study 3D chromatin organization.

Ulianov SV, Tachibana-Konwalski K, Razin SV.

Bioessays. 2017 Oct;39(10). doi: 10.1002/bies.201700104. Epub 2017 Aug 9. Review.

PMID:
28792605
16.

5-hydroxymethylcytosine in DNA repair: A new player or a red herring?

Kantidze OL, Razin SV.

Cell Cycle. 2017 Aug 18;16(16):1499-1501. doi: 10.1080/15384101.2017.1346761. Epub 2017 Jul 26.

17.

Mammalian Diaphanous-related formin-1 restricts early phases of influenza A/NWS/33 virus (H1N1) infection in LLC-MK2 cells by affecting cytoskeleton dynamics.

De Conto F, Fazzi A, Razin SV, Arcangeletti MC, Medici MC, Belletti S, Chezzi C, Calderaro A.

Mol Cell Biochem. 2018 Jan;437(1-2):185-201. doi: 10.1007/s11010-017-3107-9. Epub 2017 Jul 25.

PMID:
28744815
18.

Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure.

Ulianov SV, Galitsyna AA, Flyamer IM, Golov AK, Khrameeva EE, Imakaev MV, Abdennur NA, Gelfand MS, Gavrilov AA, Razin SV.

Epigenetics Chromatin. 2017 Jul 11;10(1):35. doi: 10.1186/s13072-017-0142-4.

19.

The IGH locus relocalizes to a "recombination compartment" in the perinucleolar region of differentiating B-lymphocytes.

Pichugin A, Iarovaia OV, Gavrilov A, Sklyar I, Barinova N, Barinov A, Ivashkin E, Caron G, Aoufouchi S, Razin SV, Fest T, Lipinski M, Vassetzky YS.

Oncotarget. 2017 Jun 20;8(25):40079-40089. doi: 10.18632/oncotarget.16941.

20.

Study of hydrogen ECR plasma in a simple mirror magnetic trap heated by 75 GHz pulsed gyrotron radiation.

Skalyga VA, Izotov IV, Sidorov AV, Golubev SV, Razin SV.

Rev Sci Instrum. 2017 Mar;88(3):033503. doi: 10.1063/1.4978278.

PMID:
28372417
21.

HIV Tat induces a prolonged MYC relocalization next to IGH in circulating B-cells.

Germini D, Tsfasman T, Klibi M, El-Amine R, Pichugin A, Iarovaia OV, Bilhou-Nabera C, Subra F, Bou Saada Y, Sukhanova A, Boutboul D, Raphaël M, Wiels J, Razin SV, Bury-Moné S, Oksenhendler E, Lipinski M, Vassetzky YS.

Leukemia. 2017 Nov;31(11):2515-2522. doi: 10.1038/leu.2017.106. Epub 2017 Mar 31.

PMID:
28360415
22.

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition.

Flyamer IM, Gassler J, Imakaev M, Brandão HB, Ulianov SV, Abdennur N, Razin SV, Mirny LA, Tachibana-Konwalski K.

Nature. 2017 Apr 6;544(7648):110-114. doi: 10.1038/nature21711. Epub 2017 Mar 29.

23.

Evolution of the Genome 3D Organization: Comparison of Fused and Segregated Globin Gene Clusters.

Kovina AP, Petrova NV, Gushchanskaya ES, Dolgushin KV, Gerasimov ES, Galitsyna AA, Penin AA, Flyamer IM, Ioudinkova ES, Gavrilov AA, Vassetzky YS, Ulianov SV, Iarovaia OV, Razin SV.

Mol Biol Evol. 2017 Jun 1;34(6):1492-1504. doi: 10.1093/molbev/msx100.

PMID:
28333290
24.

[Comparative analysis of the synchronization methods of normal and transformed human cells].

Velichko AK, Petrova NV, Razin SV, Kantidze OL.

Mol Biol (Mosk). 2017 Jan-Feb;51(1):150-156. doi: 10.7868/S0026898416060203. Russian.

25.

[Main regulatory element (MRE) of the Danio rerio α/β-globin gene domain exerts enhancer activity toward the promoters of the embryonic-larval and adult globin genes].

Kovina AP, Petrova NV, Razin SV, Yarovaia OV.

Mol Biol (Mosk). 2016 Nov-Dec;50(6):1020-1029. doi: 10.7868/S0026898416060112. Russian.

26.

Erratum to: 3D genomics imposes evolution of the domain model of eukaryotic genome organization.

Razin SV, Vassetzky YS.

Chromosoma. 2017 Feb;126(1):71. doi: 10.1007/s00412-016-0623-4. No abstract available.

PMID:
27981360
27.

Inducing cellular senescence in vitro by using genetically encoded photosensitizers.

Petrova NV, Luzhin AV, Serebrovskaya EO, Ryumina AP, Velichko AK, Razin SV, Kantidze OL.

Aging (Albany NY). 2016 Oct 14;8(10):2449-2462. doi: 10.18632/aging.101065.

28.

Small molecule compounds that induce cellular senescence.

Petrova NV, Velichko AK, Razin SV, Kantidze OL.

Aging Cell. 2016 Dec;15(6):999-1017. doi: 10.1111/acel.12518. Epub 2016 Sep 14. Review.

29.

Heat Stress-Induced DNA Damage.

Kantidze OL, Velichko AK, Luzhin AV, Razin SV.

Acta Naturae. 2016 Apr-Jun;8(2):75-8.

30.

Single-cell genome-wide studies give new insight into nongenetic cell-to-cell variability in animals.

Golov AK, Razin SV, Gavrilov AA.

Histochem Cell Biol. 2016 Sep;146(3):239-54. doi: 10.1007/s00418-016-1466-z. Epub 2016 Jul 13. Review.

PMID:
27412014
31.

3D genomics imposes evolution of the domain model of eukaryotic genome organization.

Razin SV, Vassetzky YS.

Chromosoma. 2017 Feb;126(1):59-69. doi: 10.1007/s00412-016-0604-7. Epub 2016 Jun 10. Review. Erratum in: Chromosoma. 2017 Feb;126(1):71.

PMID:
27286720
32.

Unraveling the mechanisms of chromatin fibril packaging.

Gavrilov AA, Shevelyov YY, Ulianov SV, Khrameeva EE, Kos P, Chertovich A, Razin SV.

Nucleus. 2016 May 3;7(3):319-24. doi: 10.1080/19491034.2016.1190896.

33.

Automated Analysis of Cell Cycle Phase-Specific DNA Damage Reveals Phase-Specific Differences in Cell Sensitivity to Etoposide.

Luzhin AV, Velichko AK, Razin SV, Kantidze OL.

J Cell Biochem. 2016 Oct;117(10):2209-14. doi: 10.1002/jcb.25615. Epub 2016 Jun 13.

PMID:
27240930
34.

Topologically-associating domains: gene warehouses adapted to serve transcriptional regulation.

Razin SV, Gavrilov AA, Vassetzky YS, Ulianov SV.

Transcription. 2016 May 26;7(3):84-90. doi: 10.1080/21541264.2016.1181489. Epub 2016 Apr 25. Review.

35.

Binding of Protein Factor CTCF within Chicken Genome Alpha-Globin Locus.

Kotova ES, Akopov SB, Didych DA, Petrova NV, Iarovaia OV, Razin SV, Nikolaev LG.

Acta Naturae. 2016 Jan-Mar;8(1):90-7.

36.

Distinct Patterns of Colocalization of the CCND1 and CMYC Genes With Their Potential Translocation Partner IGH at Successive Stages of B-Cell Differentiation.

Sklyar I, Iarovaia OV, Gavrilov AA, Pichugin A, Germini D, Tsfasman T, Caron G, Fest T, Lipinski M, Razin SV, Vassetzky YS.

J Cell Biochem. 2016 Jul;117(7):1506-10. doi: 10.1002/jcb.25516. Epub 2016 Mar 6.

37.

Characterization of the enhancer element of the Danio rerio minor globin gene locus.

Nefedochkina AV, Petrova NV, Ioudinkova ES, Kovina AP, Iarovaia OV, Razin SV.

Histochem Cell Biol. 2016 Apr;145(4):463-73. doi: 10.1007/s00418-016-1413-z. Epub 2016 Feb 4.

PMID:
26847176
38.

[Detection of complementary transcripts in intergenic region of the chicken α-globin gene domain].

Ioudinkova ES, Nefedochkina AV, Iarovaia OV, Razin SV.

Mol Biol (Mosk). 2015 Nov-Dec;49(6):1002-6. doi: 10.7868/S0026898415060221. Russian.

39.

Early S-phase cell hypersensitivity to heat stress.

Petrova NV, Velichko AK, Razin SV, Kantidze OL.

Cell Cycle. 2016;15(3):337-44. doi: 10.1080/15384101.2015.1127477. Epub 2015 Dec 21. Review.

40.

Proteasomes raise the microtubule dynamics in influenza A (H1N1) virus-infected LLC-MK2 cells.

De Conto F, Chezzi C, Fazzi A, Razin SV, Arcangeletti MC, Medici MC, Gatti R, Calderaro A.

Cell Mol Biol Lett. 2015 Dec;20(5):840-66. doi: 10.1515/cmble-2015-0052.

PMID:
26618573
41.

Heat Stress-Induced Transcriptional Repression.

Kantidze OL, Velichko AK, Razin SV.

Biochemistry (Mosc). 2015 Aug;80(8):990-3. doi: 10.1134/S0006297915080039. Review.

PMID:
26547066
42.

Nuclear localization of translocation partners in differentiating B-cells.

Sklyar IV, Pichugin AM, Razin SV, Vassetzky ES, Iarovaia OV.

Dokl Biochem Biophys. 2015;464:312-4. doi: 10.1134/S1607672915050129. Epub 2015 Oct 31.

PMID:
26518556
43.

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.

Ulianov SV, Khrameeva EE, Gavrilov AA, Flyamer IM, Kos P, Mikhaleva EA, Penin AA, Logacheva MD, Imakaev MV, Chertovich A, Gelfand MS, Shevelyov YY, Razin SV.

Genome Res. 2016 Jan;26(1):70-84. doi: 10.1101/gr.196006.115. Epub 2015 Oct 30.

44.

The Role of Crowding Forces in Juxtaposing β-Globin Gene Domain Remote Regulatory Elements in Mouse Erythroid Cells.

Golov AK, Gavrilov AA, Razin SV.

PLoS One. 2015 Oct 5;10(10):e0139855. doi: 10.1371/journal.pone.0139855. eCollection 2015.

45.

Heat stress induces formation of cytoplasmic granules containing HSC70 protein.

Ivanova AA, Velichko AK, Kantidze OL, Razin SV.

Dokl Biochem Biophys. 2015;463:213-5. doi: 10.1134/S1607672915040043. Epub 2015 Sep 3.

PMID:
26335814
46.

[Joint locus of a/b-globin genes in Danio rerio is segregated into structural subdomains active at different stages of development].

Dolgushin KV, Petrova NV, Iudinkova ES, Razin SV, Iarovaia OV.

Mol Biol (Mosk). 2015 May-Jun;49(3):498-506. doi: 10.7868/S0026898415030040. Russian.

47.

[Regulatory elements of the eukaryotic genome controlling transcription].

Razin SV, Gavrilov AA, Ulyanov SV.

Mol Biol (Mosk). 2015 Mar-Apr;49(2):212-23. Review. Russian.

48.

Mechanism of heat stress-induced cellular senescence elucidates the exclusive vulnerability of early S-phase cells to mild genotoxic stress.

Velichko AK, Petrova NV, Razin SV, Kantidze OL.

Nucleic Acids Res. 2015 Jul 27;43(13):6309-20. doi: 10.1093/nar/gkv573. Epub 2015 Jun 1.

49.

[Compartmentalization of the cell nucleus and spatial organization of the genome].

Gavrilov AA, Razin SV.

Mol Biol (Mosk). 2015 Jan-Feb;49(1):26-45. Review. Russian.

50.

[Spatial organization of house-keeping genes in interphase nuclei].

Gushchanskaia ES, Artemov AA, Ul'ianov SV, Penin AA, Logacheva MD, Razin SV, Gavrilov AA.

Mol Biol (Mosk). 2014 Nov-Dec;48(6):1008-18. Russian.

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