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Items: 42


Forming Big Datasets through Latent Class Concatenation of Imperfectly Matched Databases Features.

Bartlett CW, Klamer BG, Buyske S, Petrill SA, Ray WC.

Genes (Basel). 2019 Sep 19;10(9). pii: E727. doi: 10.3390/genes10090727.


In Silico Modeling of Biofilm Formation by Nontypeable Haemophilus influenzae In Vivo.

Brown JR, Jurcisek J, Lakhani V, Snedden A, Ray WC, Mokrzan EM, Bakaletz LO, Das J.

mSphere. 2019 Jul 31;4(4). pii: e00254-19. doi: 10.1128/mSphere.00254-19.


Extracellular DNA and Type IV Pilus Expression Regulate the Structure and Kinetics of Biofilm Formation by Nontypeable Haemophilus influenzae.

Das J, Mokrzan E, Lakhani V, Rosas L, Jurcisek JA, Ray WC, Bakaletz LO.

MBio. 2017 Dec 19;8(6). pii: e01466-17. doi: 10.1128/mBio.01466-17.


Comparison of the Lund and Browder table to computed tomography scan three-dimensional surface area measurement for a pediatric cohort.

Rumpf RW, Stewart WCL, Martinez SK, Gerrard CY, Adolphi NL, Thakkar R, Coleman A, Rajab A, Ray WC, Fabia R.

J Surg Res. 2018 Jan;221:275-284. doi: 10.1016/j.jss.2017.08.019. Epub 2017 Oct 5.


Facilitating surgeon understanding of complex anatomy using a three-dimensional printed model.

Cromeens BP, Ray WC, Hoehne B, Abayneh F, Adler B, Besner GE.

J Surg Res. 2017 Aug;216:18-25. doi: 10.1016/j.jss.2017.04.003. Epub 2017 Apr 21.


In silico modeling identifies CD45 as a regulator of IL-2 synergy in the NKG2D-mediated activation of immature human NK cells.

Mukherjee S, Jensen H, Stewart W, Stewart D, Ray WC, Chen SY, Nolan GP, Lanier LL, Das J.

Sci Signal. 2017 Jun 27;10(485). pii: eaai9062. doi: 10.1126/scisignal.aai9062.


Valve Endothelial Cell-Derived Tgfβ1 Signaling Promotes Nuclear Localization of Sox9 in Interstitial Cells Associated With Attenuated Calcification.

Huk DJ, Austin BF, Horne TE, Hinton RB, Ray WC, Heistad DD, Lincoln J.

Arterioscler Thromb Vasc Biol. 2016 Feb;36(2):328-38. doi: 10.1161/ATVBAHA.115.306091. Epub 2015 Dec 3.


MoFlow: visualizing conformational changes in molecules as molecular flow improves understanding.

Dabdoub SM, Rumpf RW, Shindhelm AD, Ray WC.

BMC Proc. 2015 Aug 13;9(Suppl 6 Proceedings of the 5th Symposium on Biological Data):S5. doi: 10.1186/1753-6561-9-S6-S5. eCollection 2015.


Rational design and engineering of a modified adeno-associated virus (AAV1)-based vector system for enhanced retrograde gene delivery.

Davis AS, Federici T, Ray WC, Boulis NM, OʼConnor D, Clark KR, Bartlett JS.

Neurosurgery. 2015 Feb;76(2):216-25; discussion 225. doi: 10.1227/NEU.0000000000000589.


Host-to-host variation of ecological interactions in polymicrobial infections.

Mukherjee S, Weimer KE, Seok SC, Ray WC, Jayaprakash C, Vieland VJ, Swords WE, Das J.

Phys Biol. 2014 Dec 4;12(1):016003. doi: 10.1088/1478-3975/12/1/016003.


StickWRLD as an Interactive Visual Pre-Filter for Canceromics-Centric Expression Quantitative Trait Locus Data.

Rumpf RW, Wolock SL, Ray WC.

Cancer Inform. 2014 Oct 16;13(Suppl 3):63-9. doi: 10.4137/CIN.S14024. eCollection 2014.


Understanding the sequence requirements of protein families: insights from the BioVis 2013 contests.

Ray WC, Rumpf RW, Sullivan B, Callahan N, Magliery T, Machiraju R, Wong B, Krzywinski M, Bartlett CW.

BMC Proc. 2014 Aug 28;8(Suppl 2 Proceedings of the 3rd Annual Symposium on Biologica):S1. doi: 10.1186/1753-6561-8-S2-S1. eCollection 2014.


Collection and extraction of saliva DNA for next generation sequencing.

Goode MR, Cheong SY, Li N, Ray WC, Bartlett CW.

J Vis Exp. 2014 Aug 27;(90). doi: 10.3791/51697.


Addressing the unmet need for visualizing conditional random fields in biological data.

Ray WC, Wolock SL, Callahan NW, Dong M, Li QQ, Liang C, Magliery TJ, Bartlett CW.

BMC Bioinformatics. 2014 Jul 10;15:202. doi: 10.1186/1471-2105-15-202.


Structure and function of respiratory syncytial virus surface glycoproteins.

McLellan JS, Ray WC, Peeples ME.

Curr Top Microbiol Immunol. 2013;372:83-104. doi: 10.1007/978-3-642-38919-1_4. Review.


The ZZ domain of dystrophin in DMD: making sense of missense mutations.

Vulin A, Wein N, Strandjord DM, Johnson EK, Findlay AR, Maiti B, Howard MT, Kaminoh YJ, Taylor LE, Simmons TR, Ray WC, Montanaro F, Ervasti JM, Flanigan KM.

Hum Mutat. 2014 Feb;35(2):257-64. doi: 10.1002/humu.22479. Epub 2013 Dec 2.


Aberrant community architecture and attenuated persistence of uropathogenic Escherichia coli in the absence of individual IHF subunits.

Justice SS, Li B, Downey JS, Dabdoub SM, Brockson ME, Probst GD, Ray WC, Goodman SD.

PLoS One. 2012;7(10):e48349. doi: 10.1371/journal.pone.0048349. Epub 2012 Oct 25.


An eQTL biological data visualization challenge and approaches from the visualization community.

Bartlett CW, Cheong SY, Hou L, Paquette J, Lum PY, Jäger G, Battke F, Vehlow C, Heinrich J, Nieselt K, Sakai R, Aerts J, Ray WC.

BMC Bioinformatics. 2012;13 Suppl 8:S8. doi: 10.1186/1471-2105-13-S8-S8. Epub 2012 May 18.


Targeting RSV with vaccines and small molecule drugs.

Costello HM, Ray WC, Chaiwatpongsakorn S, Peeples ME.

Infect Disord Drug Targets. 2012 Apr;12(2):110-28. Review.


FIND: a new software tool and development platform for enhanced multicolor flow analysis.

Dabdoub SM, Ray WC, Justice SS.

BMC Bioinformatics. 2011 May 10;12:145. doi: 10.1186/1471-2105-12-145.


Heme utilization by nontypeable Haemophilus influenzae is essential and dependent on Sap transporter function.

Mason KM, Raffel FK, Ray WC, Bakaletz LO.

J Bacteriol. 2011 May;193(10):2527-35. doi: 10.1128/JB.01313-10. Epub 2011 Mar 25.


A dynamically masked Gaussian can efficiently approximate a distance calculation for image segmentation.

Dabdoub SM, Justice SS, Ray WC.

Adv Exp Med Biol. 2011;696:425-32. doi: 10.1007/978-1-4419-7046-6_42. No abstract available.


Dramatically reduced precision in microarray analysis retains quantitative properties and provides additional benefits.

Ray WC.

Adv Exp Med Biol. 2011;696:101-11. doi: 10.1007/978-1-4419-7046-6_11.


Analysis of dystrophin deletion mutations predicts age of cardiomyopathy onset in becker muscular dystrophy.

Kaspar RW, Allen HD, Ray WC, Alvarez CE, Kissel JT, Pestronk A, Weiss RB, Flanigan KM, Mendell JR, Montanaro F.

Circ Cardiovasc Genet. 2009 Dec;2(6):544-51. doi: 10.1161/CIRCGENETICS.109.867242. Epub 2009 Sep 30.


The OxyR regulon in nontypeable Haemophilus influenzae.

Harrison A, Ray WC, Baker BD, Armbruster DW, Bakaletz LO, Munson RS Jr.

J Bacteriol. 2007 Feb;189(3):1004-12. Epub 2006 Dec 1.


Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20.

Harrison A, Dyer DW, Gillaspy A, Ray WC, Mungur R, Carson MB, Zhong H, Gipson J, Gipson M, Johnson LS, Lewis L, Bakaletz LO, Munson RS Jr.

J Bacteriol. 2005 Jul;187(13):4627-36.


MAVL and StickWRLD: visually exploring relationships in nucleic acid sequence alignments.

Ray WC.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W59-63.


Partial analysis of the genomes of two nontypeable Haemophilus influenzae otitis media isolates.

Munson RS Jr, Harrison A, Gillaspy A, Ray WC, Carson M, Armbruster D, Gipson J, Gipson M, Johnson L, Lewis L, Dyer DW, Bakaletz LO.

Infect Immun. 2004 May;72(5):3002-10.


Proteome of Haemophilus ducreyi by 2-D SDS-PAGE and mass spectrometry: strain variation, virulence, and carbohydrate expression.

Scheffler NK, Falick AM, Hall SC, Ray WC, Post DM, Munson RS Jr, Gibson BW.

J Proteome Res. 2003 Sep-Oct;2(5):523-33.


Tricross : using dot-plots in sequence-id space to detect uncataloged intergenic features.

Ray WC, Munson RS Jr, Daniels CJ.

Bioinformatics. 2001 Dec;17(12):1105-12.


Bovine brucellosis: an investigation of latency in progeny of culture-positive cows.

Ray WC, Brown RR, Stringfellow DA, Schnurrenberger PR, Scanlan CM, Swann AI.

J Am Vet Med Assoc. 1988 Jan 15;192(2):182-6.


Postpurchase testing and individualized plans for management of infected herds in brucellosis eradication.

Gue CS Jr, Pickerill PA, Ray WC.

J Am Vet Med Assoc. 1981 Apr 15;178(8):839-44. No abstract available.


45/20 Vaccination in a Brucella infected herd.

Ray WC, Hendrick JB.

Proc Annu Meet U S Anim Health Assoc. 1974;(78):88-103. No abstract available.


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