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Items: 28

1.

Pilot Evaluation of a Fully Automated Bioinformatics System for Analysis of Methicillin-Resistant Staphylococcus aureus Genomes and Detection of Outbreaks.

Brown NM, Blane B, Raven KE, Kumar N, Leek D, Bragin E, Rhodes PA, Enoch DA, Thaxter R, Parkhill J, Peacock SJ.

J Clin Microbiol. 2019 Oct 23;57(11). pii: e00858-19. doi: 10.1128/JCM.00858-19. Print 2019 Nov.

2.

Genomic surveillance of Escherichia coli in municipal wastewater treatment plants as an indicator of clinically relevant pathogens and their resistance genes.

Raven KE, Ludden C, Gouliouris T, Blane B, Naydenova P, Brown NM, Parkhill J, Peacock SJ.

Microb Genom. 2019 May;5(5). doi: 10.1099/mgen.0.000267. Epub 2019 May 20.

3.

Rapid sequencing of MRSA direct from clinical plates in a routine microbiology laboratory.

Blane B, Raven KE, Leek D, Brown N, Parkhill J, Peacock SJ.

J Antimicrob Chemother. 2019 Aug 1;74(8):2153-2156. doi: 10.1093/jac/dkz170.

4.

Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment.

Gouliouris T, Raven KE, Moradigaravand D, Ludden C, Coll F, Blane B, Naydenova P, Horner C, Brown NM, Corander J, Limmathurotsakul D, Parkhill J, Peacock SJ.

Genome Res. 2019 Apr;29(4):626-634. doi: 10.1101/gr.232629.117. Epub 2019 Mar 21.

5.

Methodology for Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates in a Routine Hospital Microbiology Laboratory.

Raven KE, Blane B, Leek D, Churcher C, Kokko-Gonzales P, Pugazhendhi D, Fraser L, Betley J, Parkhill J, Peacock SJ.

J Clin Microbiol. 2019 May 24;57(6). pii: e00180-19. doi: 10.1128/JCM.00180-19. Print 2019 Jun.

6.

One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock.

Ludden C, Raven KE, Jamrozy D, Gouliouris T, Blane B, Coll F, de Goffau M, Naydenova P, Horner C, Hernandez-Garcia J, Wood P, Hadjirin N, Radakovic M, Brown NM, Holmes M, Parkhill J, Peacock SJ.

mBio. 2019 Jan 22;10(1). pii: e02693-18. doi: 10.1128/mBio.02693-18.

7.

Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom.

Gouliouris T, Raven KE, Ludden C, Blane B, Corander J, Horner CS, Hernandez-Garcia J, Wood P, Hadjirin NF, Radakovic M, Holmes MA, de Goffau M, Brown NM, Parkhill J, Peacock SJ.

mBio. 2018 Nov 6;9(6). pii: e01780-18. doi: 10.1128/mBio.01780-18.

8.

Primary Stent Placement for Hepatic Artery Stenosis After Liver Transplantation: Improving Primary Patency and Reintervention Rates.

Sarwar A, Chen C, Khwaja K, Malik R, Raven KE, Weinstein JL, Evenson A, Faintuch S, Fisher R, Curry MP, Ahmed M.

Liver Transpl. 2018 Oct;24(10):1377-1383. doi: 10.1002/lt.25292.

9.

Using Individual Clinical Evaluations to Assess Residents' Clinical Judgment; Feasibility and Residents' Perception.

Calvillo-Ortiz R, Raven KE, Castillo-Angeles M, Watkins AA, Barrows CE, James BC, Boyd CG, Critchlow JF, Kent TS.

J Surg Educ. 2018 Nov;75(6):e31-e37. doi: 10.1016/j.jsurg.2018.06.023. Epub 2018 Oct 4.

PMID:
30292453
10.

Duration of exposure to multiple antibiotics is associated with increased risk of VRE bacteraemia: a nested case-control study.

Gouliouris T, Warne B, Cartwright EJP, Bedford L, Weerasuriya CK, Raven KE, Brown NM, Török ME, Limmathurotsakul D, Peacock SJ.

J Antimicrob Chemother. 2018 Jun 1;73(6):1692-1699. doi: 10.1093/jac/dky075.

11.

Genome-Based Analysis of Enterococcus faecium Bacteremia Associated with Recurrent and Mixed-Strain Infection.

Raven KE, Gouliouris T, Parkhill J, Peacock SJ.

J Clin Microbiol. 2018 Feb 22;56(3). pii: e01520-17. doi: 10.1128/JCM.01520-17. Print 2018 Mar.

12.

Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community.

Coll F, Harrison EM, Toleman MS, Reuter S, Raven KE, Blane B, Palmer B, Kappeler ARM, Brown NM, Török ME, Parkhill J, Peacock SJ.

Sci Transl Med. 2017 Oct 25;9(413). pii: eaak9745. doi: 10.1126/scitranslmed.aak9745. Epub 2017 Oct 25.

13.

Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand.

Runcharoen C, Raven KE, Reuter S, Kallonen T, Paksanont S, Thammachote J, Anun S, Blane B, Parkhill J, Peacock SJ, Chantratita N.

Genome Med. 2017 Sep 6;9(1):81. doi: 10.1186/s13073-017-0471-8.

14.

Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland.

Reuter S, Török ME, Holden MTG, Reynolds R, Raven KE, Blane B, Donker T, Bentley SD, Aanensen DM, Grundmann H, Feil EJ, Spratt BG, Parkhill J, Peacock SJ.

Genome Res. 2017 Sep;27(9):1622. doi: 10.1101/gr.228155.117. No abstract available.

15.

Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom.

Brodrick HJ, Raven KE, Kallonen T, Jamrozy D, Blane B, Brown NM, Martin V, Török ME, Parkhill J, Peacock SJ.

Genome Med. 2017 Jul 25;9(1):70. doi: 10.1186/s13073-017-0457-6.

16.

Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing.

Raven KE, Gouliouris T, Brodrick H, Coll F, Brown NM, Reynolds R, Reuter S, Török ME, Parkhill J, Peacock SJ.

Clin Infect Dis. 2017 Apr 1;64(7):886-893. doi: 10.1093/cid/ciw872.

17.

Genome-based characterization of hospital-adapted Enterococcus faecalis lineages.

Raven KE, Reuter S, Gouliouris T, Reynolds R, Russell JE, Brown NM, Török ME, Parkhill J, Peacock SJ.

Nat Microbiol. 2016 Feb 8;1:15033. doi: 10.1038/nmicrobiol.2015.33.

PMID:
27572164
18.

A decade of genomic history for healthcare-associated Enterococcus faecium in the United Kingdom and Ireland.

Raven KE, Reuter S, Reynolds R, Brodrick HJ, Russell JE, Török ME, Parkhill J, Peacock SJ.

Genome Res. 2016 Oct;26(10):1388-1396. Epub 2016 Aug 15.

19.

Comparison of two chromogenic media for the detection of vancomycin-resistant enterococcal carriage by nursing home residents.

Gouliouris T, Blane B, Brodrick HJ, Raven KE, Ambridge KE, Kidney AD, Hadjirin NF, Török ME, Limmathurotsakul D, Peacock SJ.

Diagn Microbiol Infect Dis. 2016 Aug;85(4):409-12. doi: 10.1016/j.diagmicrobio.2016.04.026. Epub 2016 May 4.

20.

Genome-based characterization of hospital-adapted Enterococcus faecalis lineages.

Raven KE, Reuter S, Gouliouris T, Reynolds R, Russell JE, Brown NM, Török ME, Parkhill J, Peacock SJ.

Nat Microbiol. 2016 Mar;1(3). pii: 15033. Epub 2016 Feb 8.

21.

Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network.

Brodrick HJ, Raven KE, Harrison EM, Blane B, Reuter S, Török ME, Parkhill J, Peacock SJ.

Genome Med. 2016 Jan 12;8(1):4. doi: 10.1186/s13073-015-0259-7.

22.

Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland.

Reuter S, Török ME, Holden MT, Reynolds R, Raven KE, Blane B, Donker T, Bentley SD, Aanensen DM, Grundmann H, Feil EJ, Spratt BG, Parkhill J, Peacock SJ.

Genome Res. 2016 Feb;26(2):263-70. doi: 10.1101/gr.196709.115. Epub 2015 Dec 15. Erratum in: Genome Res. 2017 Sep;27(9):1622.

23.

Characterization of plasmids in extensively drug-resistant acinetobacter strains isolated in India and Pakistan.

Jones LS, Carvalho MJ, Toleman MA, White PL, Connor TR, Mushtaq A, Weeks JL, Kumarasamy KK, Raven KE, Török ME, Peacock SJ, Howe RA, Walsh TR.

Antimicrob Agents Chemother. 2015 Feb;59(2):923-9. doi: 10.1128/AAC.03242-14. Epub 2014 Nov 24.

24.

Zero tolerance for healthcare-associated MRSA bacteraemia: is it realistic?

Török ME, Harris SR, Cartwright EJ, Raven KE, Brown NM, Allison ME, Greaves D, Quail MA, Limmathurotsakul D, Holden MT, Parkhill J, Peacock SJ.

J Antimicrob Chemother. 2014 Aug;69(8):2238-45. doi: 10.1093/jac/dku128. Epub 2014 Apr 30.

25.

Molecular tracing of the emergence, diversification, and transmission of S. aureus sequence type 8 in a New York community.

Uhlemann AC, Dordel J, Knox JR, Raven KE, Parkhill J, Holden MT, Peacock SJ, Lowy FD.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6738-43. doi: 10.1073/pnas.1401006111. Epub 2014 Apr 21.

26.

Use of Vitek 2 antimicrobial susceptibility profile to identify mecC in methicillin-resistant Staphylococcus aureus.

Cartwright EJ, Paterson GK, Raven KE, Harrison EM, Gouliouris T, Kearns A, Pichon B, Edwards G, Skov RL, Larsen AR, Holmes MA, Parkhill J, Peacock SJ, Török ME.

J Clin Microbiol. 2013 Aug;51(8):2732-4. doi: 10.1128/JCM.00847-13. Epub 2013 May 29.

27.

Fever, abdominal pain and renal failure in a kidney transplant recipient.

Kher A, Raven KE, Kushner YB, Mandelbrot DA.

Am J Transplant. 2013 Feb;13(2):518-20. doi: 10.1111/j.1600-6143.2012.04335.x. No abstract available.

28.

Tongue ulcer in a liver transplant recipient on a new immunosuppressive regimen.

Cohen EB, Rogers CC, Raven KE.

Am J Transplant. 2012 Apr;12(4):1057-9. doi: 10.1111/j.1600-6143.2012.04020.x. No abstract available.

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