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Items: 1 to 50 of 78

1.

Exemplar-based inpainting as a solution to the missing wedge problem in electron tomography.

Trampert P, Wang W, Chen D, Ravelli RBG, Dahmen T, Peters PJ, Kübel C, Slusallek P.

Ultramicroscopy. 2018 Aug;191:1-10. doi: 10.1016/j.ultramic.2018.04.001. Epub 2018 Apr 21.

PMID:
29705643
2.

Single-particle cryo-EM using alignment by classification (ABC): the structure of Lumbricus terrestris haemoglobin.

Afanasyev P, Seer-Linnemayr C, Ravelli RBG, Matadeen R, De Carlo S, Alewijnse B, Portugal RV, Pannu NS, Schatz M, van Heel M.

IUCrJ. 2017 Aug 31;4(Pt 5):678-694. doi: 10.1107/S2052252517010922. eCollection 2017 Sep 1.

3.

Fibril structure of amyloid-β(1-42) by cryo-electron microscopy.

Gremer L, Schölzel D, Schenk C, Reinartz E, Labahn J, Ravelli RBG, Tusche M, Lopez-Iglesias C, Hoyer W, Heise H, Willbold D, Schröder GF.

Science. 2017 Oct 6;358(6359):116-119. doi: 10.1126/science.aao2825. Epub 2017 Sep 7.

4.

Accounting for partiality in serial crystallography using ray-tracing principles.

Kroon-Batenburg LM, Schreurs AM, Ravelli RB, Gros P.

Acta Crystallogr D Biol Crystallogr. 2015 Sep;71(Pt 9):1799-811. doi: 10.1107/S1399004715011803. Epub 2015 Aug 25.

5.

A posteriori correction of camera characteristics from large image data sets.

Afanasyev P, Ravelli RB, Matadeen R, De Carlo S, van Duinen G, Alewijnse B, Peters PJ, Abrahams JP, Portugal RV, Schatz M, van Heel M.

Sci Rep. 2015 Jun 11;5:10317. doi: 10.1038/srep10317.

6.

Replication of Plasmodium in reticulocytes can occur without hemozoin formation, resulting in chloroquine resistance.

Lin JW, Spaccapelo R, Schwarzer E, Sajid M, Annoura T, Deroost K, Ravelli RB, Aime E, Capuccini B, Mommaas-Kienhuis AM, O'Toole T, Prins F, Franke-Fayard BM, Ramesar J, Chevalley-Maurel S, Kroeze H, Koster AJ, Tanke HJ, Crisanti A, Langhorne J, Arese P, Van den Steen PE, Janse CJ, Khan SM.

J Exp Med. 2015 Jun 1;212(6):893-903. doi: 10.1084/jem.20141731. Epub 2015 May 4.

7.

Radiation damage to nucleoprotein complexes in macromolecular crystallography.

Bury C, Garman EF, Ginn HM, Ravelli RB, Carmichael I, Kneale G, McGeehan JE.

J Synchrotron Radiat. 2015 Mar;22(2):213-24. doi: 10.1107/S1600577514026289. Epub 2015 Jan 30.

8.

The use of a mini-κ goniometer head in macromolecular crystallography diffraction experiments.

Brockhauser S, Ravelli RB, McCarthy AA.

Acta Crystallogr D Biol Crystallogr. 2013 Jul;69(Pt 7):1241-51. doi: 10.1107/S0907444913003880. Epub 2013 Jun 15.

9.

Image formation modeling in cryo-electron microscopy.

Vulović M, Ravelli RB, van Vliet LJ, Koster AJ, Lazić I, Lücken U, Rullgård H, Öktem O, Rieger B.

J Struct Biol. 2013 Jul;183(1):19-32. doi: 10.1016/j.jsb.2013.05.008. Epub 2013 May 25.

PMID:
23711417
10.

Destruction of tissue, cells and organelles in type 1 diabetic rats presented at macromolecular resolution.

Ravelli RB, Kalicharan RD, Avramut MC, Sjollema KA, Pronk JW, Dijk F, Koster AJ, Visser JT, Faas FG, Giepmans BN.

Sci Rep. 2013;3:1804. doi: 10.1038/srep01804.

11.

Conversion of mature human β-cells into glucagon-producing α-cells.

Spijker HS, Ravelli RB, Mommaas-Kienhuis AM, van Apeldoorn AA, Engelse MA, Zaldumbide A, Bonner-Weir S, Rabelink TJ, Hoeben RC, Clevers H, Mummery CL, Carlotti F, de Koning EJ.

Diabetes. 2013 Jul;62(7):2471-80. doi: 10.2337/db12-1001. Epub 2013 Apr 8.

12.

Glomerular endothelial surface layer acts as a barrier against albumin filtration.

Dane MJ, van den Berg BM, Avramut MC, Faas FG, van der Vlag J, Rops AL, Ravelli RB, Koster BJ, van Zonneveld AJ, Vink H, Rabelink TJ.

Am J Pathol. 2013 May;182(5):1532-40. doi: 10.1016/j.ajpath.2013.01.049. Epub 2013 Mar 19. Erratum in: Am J Pathol. 2014 Jul;184(7):2144.

PMID:
23518410
13.

Non-random mtDNA segregation patterns indicate a metastable heteroplasmic segregation unit in m.3243A>G cybrid cells.

Raap AK, Jahangir Tafrechi RS, van de Rijke FM, Pyle A, Wählby C, Szuhai K, Ravelli RB, de Coo RF, Rajasimha HK, Nilsson M, Chinnery PF, Samuels DC, Janssen GM.

PLoS One. 2012;7(12):e52080. doi: 10.1371/journal.pone.0052080. Epub 2012 Dec 18.

14.

Localization of fluorescently labeled structures in frozen-hydrated samples using integrated light electron microscopy.

Faas FG, Bárcena M, Agronskaia AV, Gerritsen HC, Moscicka KB, Diebolder CA, van Driel LF, Limpens RW, Bos E, Ravelli RB, Koning RI, Koster AJ.

J Struct Biol. 2013 Mar;181(3):283-90. doi: 10.1016/j.jsb.2012.12.004. Epub 2012 Dec 20.

PMID:
23261400
15.

Non-rigid image registration to reduce beam-induced blurring of cryo-electron microscopy images.

Karimi Nejadasl F, Karuppasamy M, Newman ER, McGeehan JE, Ravelli RB.

J Synchrotron Radiat. 2013 Jan;20(Pt 1):58-66. doi: 10.1107/S0909049512044408. Epub 2012 Nov 29.

16.

Virtual nanoscopy: generation of ultra-large high resolution electron microscopy maps.

Faas FG, Avramut MC, van den Berg BM, Mommaas AM, Koster AJ, Ravelli RB.

J Cell Biol. 2012 Aug 6;198(3):457-69. doi: 10.1083/jcb.201201140.

17.

Design and characterization of modular scaffolds for tubulin assembly.

Mignot I, Pecqueur L, Dorléans A, Karuppasamy M, Ravelli RB, Dreier B, Plückthun A, Knossow M, Gigant B.

J Biol Chem. 2012 Sep 7;287(37):31085-94. doi: 10.1074/jbc.M112.383869. Epub 2012 Jul 12.

18.

Large multimeric assemblies of nucleosome assembly protein and histones revealed by small-angle X-ray scattering and electron microscopy.

Newman ER, Kneale GG, Ravelli RB, Karuppasamy M, Karimi Nejadasl F, Taylor IA, McGeehan JE.

J Biol Chem. 2012 Aug 3;287(32):26657-65. doi: 10.1074/jbc.M112.340422. Epub 2012 Jun 15.

19.

Defocus estimation from stroboscopic cryo-electron microscopy data.

Karimi Nejadasl F, Karuppasamy M, Koster AJ, Ravelli RB.

Ultramicroscopy. 2011 Nov;111(11):1592-8. doi: 10.1016/j.ultramic.2011.08.007. Epub 2011 Aug 26.

PMID:
21945999
20.

Radiation damage in single-particle cryo-electron microscopy: effects of dose and dose rate.

Karuppasamy M, Karimi Nejadasl F, Vulovic M, Koster AJ, Ravelli RB.

J Synchrotron Radiat. 2011 May;18(Pt 3):398-412. doi: 10.1107/S090904951100820X. Epub 2011 Apr 9.

21.

Translation calibration of inverse-kappa goniometers in macromolecular crystallography.

Brockhauser S, White KI, McCarthy AA, Ravelli RB.

Acta Crystallogr A. 2011 May;67(Pt 3):219-28. doi: 10.1107/S0108767311004831. Epub 2011 Mar 15.

22.

A new approach to improve the quality of ultrathin cryo-sections; its use for immunogold EM and correlative electron cryo-tomography.

Bos E, SantAnna C, Gnaegi H, Pinto RF, Ravelli RB, Koster AJ, de Souza W, Peters PJ.

J Struct Biol. 2011 Jul;175(1):62-72. doi: 10.1016/j.jsb.2011.03.022. Epub 2011 Apr 5.

PMID:
21473917
23.

Infrared protein crystallography.

Sage JT, Zhang Y, McGeehan J, Ravelli RB, Weik M, van Thor JJ.

Biochim Biophys Acta. 2011 Jun;1814(6):760-77. doi: 10.1016/j.bbapap.2011.02.012. Epub 2011 Mar 2. Review.

PMID:
21376143
24.

Cartilage ultrastructure in proteoglycan-deficient zebrafish mutants brings to light new candidate genes for human skeletal disorders.

Wiweger MI, Avramut CM, de Andrea CE, Prins FA, Koster AJ, Ravelli RB, Hogendoorn PC.

J Pathol. 2011 Mar;223(4):531-42. doi: 10.1002/path.2824. Epub 2011 Jan 5.

PMID:
21294126
25.

MxCuBE: a synchrotron beamline control environment customized for macromolecular crystallography experiments.

Gabadinho J, Beteva A, Guijarro M, Rey-Bakaikoa V, Spruce D, Bowler MW, Brockhauser S, Flot D, Gordon EJ, Hall DR, Lavault B, McCarthy AA, McCarthy J, Mitchell E, Monaco S, Mueller-Dieckmann C, Nurizzo D, Ravelli RB, Thibault X, Walsh MA, Leonard GA, McSweeney SM.

J Synchrotron Radiat. 2010 Sep;17(5):700-7. doi: 10.1107/S0909049510020005. Epub 2010 Jul 13.

26.

A toolkit for the characterization of CCD cameras for transmission electron microscopy.

Vulovic M, Rieger B, van Vliet LJ, Koster AJ, Ravelli RB.

Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):97-109. doi: 10.1107/S0907444909031205. Epub 2009 Dec 21.

PMID:
20057054
27.

Improving diffraction by humidity control: a novel device compatible with X-ray beamlines.

Sanchez-Weatherby J, Bowler MW, Huet J, Gobbo A, Felisaz F, Lavault B, Moya R, Kadlec J, Ravelli RB, Cipriani F.

Acta Crystallogr D Biol Crystallogr. 2009 Dec;65(Pt 12):1237-46. doi: 10.1107/S0907444909037822. Epub 2009 Nov 17.

PMID:
19966409
28.

A decade of user operation on the macromolecular crystallography MAD beamline ID14-4 at the ESRF.

McCarthy AA, Brockhauser S, Nurizzo D, Theveneau P, Mairs T, Spruce D, Guijarro M, Lesourd M, Ravelli RB, McSweeney S.

J Synchrotron Radiat. 2009 Nov;16(Pt 6):803-12. doi: 10.1107/S0909049509035377. Epub 2009 Oct 7.

29.

Radiation stability of proteinase K crystals grown by LB nanotemplate method.

Pechkova E, Tripathi S, Ravelli RB, McSweeney S, Nicolini C.

J Struct Biol. 2009 Dec;168(3):409-18. doi: 10.1016/j.jsb.2009.08.005. Epub 2009 Aug 15. Erratum in: J Struct Biol. 2011 Feb;173(2):418. J Struct Biol. 2011 May;174(2):424.

PMID:
19686853
30.

Variations in the colchicine-binding domain provide insight into the structural switch of tubulin.

Dorléans A, Gigant B, Ravelli RB, Mailliet P, Mikol V, Knossow M.

Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13775-9. doi: 10.1073/pnas.0904223106. Epub 2009 Aug 5.

31.

The Max-Inf2/Lorentz Center workshop on New algorithms in macromolecular crystallography and electron microscopy.

Pannu NS, Ravelli RB, Abrahams JP.

Acta Crystallogr D Biol Crystallogr. 2009 Jul;65(Pt 7):623-4. doi: 10.1107/S0907444909020861. Epub 2009 Jun 20.

32.

Structure of SRP14 from the Schizosaccharomyces pombe signal recognition particle.

Brooks MA, Ravelli RB, McCarthy AA, Strub K, Cusack S.

Acta Crystallogr D Biol Crystallogr. 2009 May;65(Pt 5):421-33. doi: 10.1107/S0907444909005484. Epub 2009 Apr 18.

PMID:
19390147
33.

Colouring cryo-cooled crystals: online microspectrophotometry.

McGeehan J, Ravelli RB, Murray JW, Owen RL, Cipriani F, McSweeney S, Weik M, Garman EF.

J Synchrotron Radiat. 2009 Mar;16(Pt 2):163-72. doi: 10.1107/S0909049509001629. Epub 2009 Feb 25.

34.

Microtubule-destabilizing agents: structural and mechanistic insights from the interaction of colchicine and vinblastine with tubulin.

Gigant B, Cormier A, Dorléans A, Ravelli RB, Knossow M.

Top Curr Chem. 2009;286:259-78. doi: 10.1007/128_2008_11.

PMID:
23563615
35.

The 1.8-A crystal structure of alpha1-acid glycoprotein (Orosomucoid) solved by UV RIP reveals the broad drug-binding activity of this human plasma lipocalin.

Schönfeld DL, Ravelli RB, Mueller U, Skerra A.

J Mol Biol. 2008 Dec 12;384(2):393-405. doi: 10.1016/j.jmb.2008.09.020. Epub 2008 Sep 16.

PMID:
18823996
36.

Structural insight into the inhibition of tubulin by vinca domain peptide ligands.

Cormier A, Marchand M, Ravelli RB, Knossow M, Gigant B.

EMBO Rep. 2008 Nov;9(11):1101-6. doi: 10.1038/embor.2008.171. Epub 2008 Sep 12.

37.

Structural analysis of the genetic switch that regulates the expression of restriction-modification genes.

McGeehan JE, Streeter SD, Thresh SJ, Ball N, Ravelli RB, Kneale GG.

Nucleic Acids Res. 2008 Aug;36(14):4778-87. doi: 10.1093/nar/gkn448. Epub 2008 Jul 21.

38.

Differential specific radiation damage in the Cu II-bound and Pd II-bound forms of an alpha-helical foldamer: a case study of crystallographic phasing by RIP and SAD.

Fütterer K, Ravelli RB, White SA, Nicoll AJ, Allemann RK.

Acta Crystallogr D Biol Crystallogr. 2008 Mar;64(Pt 3):264-72. doi: 10.1107/S0907444907065948. Epub 2008 Feb 20.

PMID:
18323621
39.

3-D structure of serum paraoxonase 1 sheds light on its activity, stability, solubility and crystallizability.

Harel M, Brumshtein B, Meged R, Dvir H, Ravelli RB, McCarthy A, Toker L, Silman I, Sussman JL.

Arh Hig Rada Toksikol. 2007 Sep;58(3):347-53.

PMID:
17913690
40.

Structural insights into the Slit-Robo complex.

Morlot C, Thielens NM, Ravelli RB, Hemrika W, Romijn RA, Gros P, Cusack S, McCarthy AA.

Proc Natl Acad Sci U S A. 2007 Sep 18;104(38):14923-8. Epub 2007 Sep 11.

41.

The solution and crystal structures of a module pair from the Staphylococcus aureus-binding site of human fibronectin--a tale with a twist.

Rudiño-Piñera E, Ravelli RB, Sheldrick GM, Nanao MH, Korostelev VV, Werner JM, Schwarz-Linek U, Potts JR, Garman EF.

J Mol Biol. 2007 May 4;368(3):833-44. Epub 2007 Feb 22.

PMID:
17368672
42.

Structure of dimeric SecA, the Escherichia coli preprotein translocase motor.

Papanikolau Y, Papadovasilaki M, Ravelli RB, McCarthy AA, Cusack S, Economou A, Petratos K.

J Mol Biol. 2007 Mar 9;366(5):1545-57. Epub 2006 Dec 23.

PMID:
17229438
43.

Plastic-embedded protein crystals.

Ravelli RB, Haselmann-Weiss U, McGeehan JE, McCarthy AA, Marquez JA, Antony C, Frangakis AS, Stranzl G.

J Synchrotron Radiat. 2007 Jan;14(Pt 1):128-32. Epub 2006 Dec 15.

PMID:
17211079
44.

X-ray radiation-induced damage in DNA monitored by online Raman.

McGeehan JE, Carpentier P, Royant A, Bourgeois D, Ravelli RB.

J Synchrotron Radiat. 2007 Jan;14(Pt 1):99-108. Epub 2006 Dec 15.

PMID:
17211076
45.

C3D: a program for the automated centring of cryocooled crystals.

Lavault B, Ravelli RB, Cipriani F.

Acta Crystallogr D Biol Crystallogr. 2006 Nov;62(Pt 11):1348-57. Epub 2006 Oct 18.

PMID:
17057338
46.

Radiation damage in macromolecular cryocrystallography.

Ravelli RB, Garman EF.

Curr Opin Struct Biol. 2006 Oct;16(5):624-9. Epub 2006 Aug 30. Review.

PMID:
16938450
47.

Crystal structure of the UPF2-interacting domain of nonsense-mediated mRNA decay factor UPF1.

Kadlec J, Guilligay D, Ravelli RB, Cusack S.

RNA. 2006 Oct;12(10):1817-24. Epub 2006 Aug 24.

48.

Crystal structure of the rabies virus nucleoprotein-RNA complex.

Albertini AA, Wernimont AK, Muziol T, Ravelli RB, Clapier CR, Schoehn G, Weissenhorn W, Ruigrok RW.

Science. 2006 Jul 21;313(5785):360-3. Epub 2006 Jun 15.

49.

Structural basis for budding by the ESCRT-III factor CHMP3.

Muzioł T, Pineda-Molina E, Ravelli RB, Zamborlini A, Usami Y, Göttlinger H, Weissenhorn W.

Dev Cell. 2006 Jun;10(6):821-30.

50.

Phasing macromolecular structures with UV-induced structural changes.

Nanao MH, Ravelli RB.

Structure. 2006 Apr;14(4):791-800.

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