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Items: 1 to 50 of 327

1.

Complete Genome Sequence of Lactobacillus crispatus CO3MRSI1.

McComb E, Holm J, Ma B, Ravel J.

Microbiol Resour Announc. 2019 Jan 31;8(5). pii: e01538-18. doi: 10.1128/MRA.01538-18. eCollection 2019 Jan.

2.

Toward unrestricted use of public genomic data.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 Jan 25;363(6425):350-352. doi: 10.1126/science.aaw1280. No abstract available.

PMID:
30679363
3.

The evolving facets of bacterial vaginosis: implications for HIV transmission.

McKinnon LR, Achilles S, Bradshaw CS, Burgener A, Crucitti T, Fredricks DN, Jaspan HB, Kaul R, Kaushic C, Klatt N, Kwon DS, Marrazzo JM, Masson L, McClelland S, Ravel J, van de Wijgert JHHM, Vodstrcil LA, Tachedjian G.

AIDS Res Hum Retroviruses. 2019 Jan 14. doi: 10.1089/AID.2018.0304. [Epub ahead of print]

PMID:
30638028
4.

Host-targeted niclosamide inhibits C. difficile virulence and prevents disease in mice without disrupting the gut microbiota.

Tam J, Hamza T, Ma B, Chen K, Beilhartz GL, Ravel J, Feng H, Melnyk RA.

Nat Commun. 2018 Dec 7;9(1):5233. doi: 10.1038/s41467-018-07705-w.

5.

Microbial Biomarkers of Intestinal Barrier Maturation in Preterm Infants.

Ma B, McComb E, Gajer P, Yang H, Humphrys M, Okogbule-Wonodi AC, Fasano A, Ravel J, Viscardi RM.

Front Microbiol. 2018 Nov 14;9:2755. doi: 10.3389/fmicb.2018.02755. eCollection 2018.

6.

The Microbiome and Men's Health.

Platz EA, Liu CM, Michaud DS, Mueller NT, Ravel J.

Clin Chem. 2019 Jan;65(1):28-35. doi: 10.1373/clinchem.2018.287284. Epub 2018 Nov 20. No abstract available.

PMID:
30459165
7.

Impact of Standard Bacterial Vaginosis Treatment on the Genital Microbiota, Immune Milieu, and Ex Vivo Human Immunodeficiency Virus Susceptibility.

Joag V, Obila O, Gajer P, Scott MC, Dizzell S, Humphrys M, Shahabi K, Huibner S, Shannon B, Tharao W, Mureithi M, Oyugi J, Kimani J, Kaushic C, Ravel J, Anzala O, Kaul R.

Clin Infect Dis. 2018 Sep 12. doi: 10.1093/cid/ciy762. [Epub ahead of print]

PMID:
30407498
8.

A high-throughput sequencing assay to comprehensively detect and characterize unicellular eukaryotes and helminths from biological and environmental samples.

Cannon MV, Bogale H, Rutt L, Humphrys M, Korpe P, Duggal P, Ravel J, Serre D.

Microbiome. 2018 Oct 29;6(1):195. doi: 10.1186/s40168-018-0581-6.

9.

Association between the vaginal microbiota, menopause status, and signs of vulvovaginal atrophy.

Brotman RM, Shardell MD, Gajer P, Fadrosh D, Chang K, Silver MI, Viscidi RP, Burke AE, Ravel J, Gravitt PE.

Menopause. 2018 Nov;25(11):1321-1330. doi: 10.1097/GME.0000000000001236.

PMID:
30358729
10.

The authors reply.

C von Rosenvinge E, Palumbo F, Ravel J, Rowthorn V, Hoffmann D.

Gut Microbes. 2018 Oct 5:1-2. doi: 10.1080/19490976.2018.1516980. [Epub ahead of print]

PMID:
30289345
11.

Anal Microbial Patterns and Oncogenic Human Papillomavirus in a Pilot Study of Nigerian Men Who Have Sex with Men at Risk for or Living with HIV.

Nowak RG, Bentzen SM, Ravel J, Crowell TA, Dauda W, Ma B, Liu H, Blattner WA, Baral SD, Charurat ME.

AIDS Res Hum Retroviruses. 2018 Oct 17. doi: 10.1089/AID.2018.0158. [Epub ahead of print]

PMID:
30215262
12.

Ruthenium(II) Polypyridyl Complexes as Photosensitizers for Antibacterial Photodynamic Therapy: A Structure-Activity Study on Clinical Bacterial Strains.

Le Gall T, Lemercier G, Chevreux S, Tücking KS, Ravel J, Thétiot F, Jonas U, Schönherr H, Montier T.

ChemMedChem. 2018 Oct 22;13(20):2229-2239. doi: 10.1002/cmdc.201800392. Epub 2018 Oct 9.

PMID:
30157309
13.

Cervicovaginal microbiota, women's health, and reproductive outcomes.

Kroon SJ, Ravel J, Huston WM.

Fertil Steril. 2018 Aug;110(3):327-336. doi: 10.1016/j.fertnstert.2018.06.036. Review.

PMID:
30098679
14.

Comparative phase I randomized open-label pilot clinical trial of Gynophilus® (Lcr regenerans®) immediate release capsules versus slow release muco-adhesive tablets.

Dausset C, Patrier S, Gajer P, Thoral C, Lenglet Y, Cardot JM, Judlin P, Ravel J, Nivoliez A.

Eur J Clin Microbiol Infect Dis. 2018 Oct;37(10):1869-1880. doi: 10.1007/s10096-018-3321-8. Epub 2018 Jul 21.

15.

Herpes simplex virus-binding IgG traps HSV in human cervicovaginal mucus across the menstrual cycle and diverse vaginal microbial composition.

Schroeder HA, Nunn KL, Schaefer A, Henry CE, Lam F, Pauly MH, Whaley KJ, Zeitlin L, Humphrys MS, Ravel J, Lai SK.

Mucosal Immunol. 2018 Sep;11(5):1477-1486. doi: 10.1038/s41385-018-0054-z. Epub 2018 Jul 9.

PMID:
29988116
16.

Anti-HIV-1 Activity of Lactic Acid in Human Cervicovaginal Fluid.

Tyssen D, Wang YY, Hayward JA, Agius PA, DeLong K, Aldunate M, Ravel J, Moench TR, Cone RA, Tachedjian G.

mSphere. 2018 Jul 5;3(4). pii: e00055-18. doi: 10.1128/mSphere.00055-18.

17.

Impact of the griffithsin anti-HIV microbicide and placebo gels on the rectal mucosal proteome and microbiome in non-human primates.

Girard L, Birse K, Holm JB, Gajer P, Humphrys MS, Garber D, Guenthner P, Noël-Romas L, Abou M, McCorrister S, Westmacott G, Wang L, Rohan LC, Matoba N, McNicholl J, Palmer KE, Ravel J, Burgener AD.

Sci Rep. 2018 May 23;8(1):8059. doi: 10.1038/s41598-018-26313-8.

18.

The vaginal microbiota and its association with human papillomavirus, Chlamydia trachomatis, Neisseria gonorrhoeae and Mycoplasma genitalium infections: a systematic review and meta-analysis.

Tamarelle J, Thiébaut ACM, de Barbeyrac B, Bébéar C, Ravel J, Delarocque-Astagneau E.

Clin Microbiol Infect. 2019 Jan;25(1):35-47. doi: 10.1016/j.cmi.2018.04.019. Epub 2018 May 3. Review.

PMID:
29729331
19.

Application of Atlas of Cancer Signalling Network in preclinical studies.

Monraz Gomez LC, Kondratova M, Ravel JM, Barillot E, Zinovyev A, Kuperstein I.

Brief Bioinform. 2018 May 3. doi: 10.1093/bib/bby031. [Epub ahead of print]

PMID:
29726961
20.

A Community-Level Initiative to Prevent Obesity: Results From Kaiser Permanente's Healthy Eating Active Living Zones Initiative in California.

Cheadle A, Atiedu A, Rauzon S, Schwartz PM, Keene L, Davoudi M, Spring R, Molina M, Lee L, Boyle K, Williamson D, Steimberg C, Tinajero R, Ravel J, Nudelman J, Azuma AM, Kuo ES, Solomon L.

Am J Prev Med. 2018 May;54(5S2):S150-S159. doi: 10.1016/j.amepre.2018.01.024.

21.

Differential immune responses and microbiota profiles in children with autism spectrum disorders and co-morbid gastrointestinal symptoms.

Rose DR, Yang H, Serena G, Sturgeon C, Ma B, Careaga M, Hughes HK, Angkustsiri K, Rose M, Hertz-Picciotto I, Van de Water J, Hansen RL, Ravel J, Fasano A, Ashwood P.

Brain Behav Immun. 2018 May;70:354-368. doi: 10.1016/j.bbi.2018.03.025. Epub 2018 Mar 20.

PMID:
29571898
22.

Higher Levels of a Cytotoxic Protein, Vaginolysin, in Lactobacillus-Deficient Community State Types at the Vaginal Mucosa.

Nowak RG, Randis TM, Desai P, He X, Robinson CK, Rath JM, Glover ED, Ratner AJ, Ravel J, Brotman RM.

Sex Transm Dis. 2018 Apr;45(4):e14-e17. doi: 10.1097/OLQ.0000000000000774.

PMID:
29465671
23.

The implausible "in vivo" role of hydrogen peroxide as an antimicrobial factor produced by vaginal microbiota.

Tachedjian G, O'Hanlon DE, Ravel J.

Microbiome. 2018 Feb 6;6(1):29. doi: 10.1186/s40168-018-0418-3.

24.

Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis.

Noyes N, Cho KC, Ravel J, Forney LJ, Abdo Z.

PLoS One. 2018 Jan 24;13(1):e0191625. doi: 10.1371/journal.pone.0191625. eCollection 2018.

25.

Postmenopausal breast cancer and oestrogen associations with the IgA-coated and IgA-noncoated faecal microbiota.

Goedert JJ, Hua X, Bielecka A, Okayasu I, Milne GL, Jones GS, Fujiwara M, Sinha R, Wan Y, Xu X, Ravel J, Shi J, Palm NW, Feigelson HS.

Br J Cancer. 2018 Feb 20;118(4):471-479. doi: 10.1038/bjc.2017.435. Epub 2018 Jan 23.

26.

Vaginal microbiota composition and association with prevalent Chlamydia trachomatis infection: a cross-sectional study of young women attending a STI clinic in France.

Tamarelle J, de Barbeyrac B, Le Hen I, Thiébaut A, Bébéar C, Ravel J, Delarocque-Astagneau E.

Sex Transm Infect. 2018 Dec;94(8):616-618. doi: 10.1136/sextrans-2017-053346. Epub 2018 Jan 22.

PMID:
29358524
27.

Cigarette smoking is associated with an altered vaginal tract metabolomic profile.

Nelson TM, Borgogna JC, Michalek RD, Roberts DW, Rath JM, Glover ED, Ravel J, Shardell MD, Yeoman CJ, Brotman RM.

Sci Rep. 2018 Jan 16;8(1):852. doi: 10.1038/s41598-017-14943-3.

28.

"Available upon request": not good enough for microbiome data!

Langille MGI, Ravel J, Fricke WF.

Microbiome. 2018 Jan 10;6(1):8. doi: 10.1186/s40168-017-0394-z. No abstract available.

29.

A retrospective pilot study to determine whether the reproductive tract microbiota differs between women with a history of infertility and fertile women.

Wee BA, Thomas M, Sweeney EL, Frentiu FD, Samios M, Ravel J, Gajer P, Myers G, Timms P, Allan JA, Huston WM.

Aust N Z J Obstet Gynaecol. 2018 Jun;58(3):341-348. doi: 10.1111/ajo.12754. Epub 2017 Dec 26.

PMID:
29280134
30.

Improving regulation of microbiota transplants.

Hoffmann D, Palumbo F, Ravel J, Roghmann MC, Rowthorn V, von Rosenvinge E.

Science. 2017 Dec 15;358(6369):1390-1391. doi: 10.1126/science.aaq0034. No abstract available.

31.

Early screening for Chlamydia trachomatis in young women for primary prevention of pelvic inflammatory disease (i-Predict): study protocol for a randomised controlled trial.

Tamarelle J, Thiébaut ACM, Sabin B, Bébéar C, Judlin P, Fauconnier A, Rahib D, Méaude-Roufai L, Ravel J, Morré SA, de Barbeyrac B, Delarocque-Astagneau E; i-Predict study group.

Trials. 2017 Nov 13;18(1):534. doi: 10.1186/s13063-017-2211-1.

32.

Enhancement of lung gene delivery after aerosol: a new strategy using non-viral complexes with antibacterial properties.

Mottais A, Le Gall T, Sibiril Y, Ravel J, Laurent V, d'Arbonneau F, Montier T.

Biosci Rep. 2017 Nov 17;37(6). pii: BSR20160618. doi: 10.1042/BSR20160618. Print 2017 Dec 22. Review.

33.

Does Active Oral Sex Contribute to Female Infertility?

Bavoil PM, Marques PX, Brotman R, Ravel J.

J Infect Dis. 2017 Nov 15;216(8):932-935. doi: 10.1093/infdis/jix419.

34.

Role of Molecular Biology in Diagnosis and Characterization of Vulvo-Vaginitis in Clinical Practice.

Donders GGG, Ravel J, Vitali B, Netea MG, Salumets A, Unemo M.

Gynecol Obstet Invest. 2017;82(6):607-616. doi: 10.1159/000478982. Epub 2017 Oct 10.

PMID:
29017160
35.

Clinical Relevance of Gastrointestinal Microbiota During Pregnancy: A Primer for Nurses.

Chung SY, Ravel J, Regan M.

Biol Res Nurs. 2018 Jan;20(1):84-102. doi: 10.1177/1099800417732412. Epub 2017 Sep 27.

36.

Lactobacillus iners-dominated vaginal microbiota is associated with increased susceptibility to Chlamydia trachomatis infection in Dutch women: a case-control study.

van Houdt R, Ma B, Bruisten SM, Speksnijder AGCL, Ravel J, de Vries HJC.

Sex Transm Infect. 2018 Mar;94(2):117-123. doi: 10.1136/sextrans-2017-053133. Epub 2017 Sep 25.

37.

Group B Streptococcus and the Vaginal Microbiota.

Rosen GH, Randis TM, Desai PV, Sapra KJ, Ma B, Gajer P, Humphrys MS, Ravel J, Gelber SE, Ratner AJ.

J Infect Dis. 2017 Sep 15;216(6):744-751. doi: 10.1093/infdis/jix395.

38.

Molecular Characterization of the Human Stomach Microbiota in Gastric Cancer Patients.

Yu G, Torres J, Hu N, Medrano-Guzman R, Herrera-Goepfert R, Humphrys MS, Wang L, Wang C, Ding T, Ravel J, Taylor PR, Abnet CC, Goldstein AM.

Front Cell Infect Microbiol. 2017 Jul 6;7:302. doi: 10.3389/fcimb.2017.00302. eCollection 2017.

39.

Mycoplasma hominis and Mycoplasma genitalium in the Vaginal Microbiota and Persistent High-Risk Human Papillomavirus Infection.

Adebamowo SN, Ma B, Zella D, Famooto A, Ravel J, Adebamowo C; ACCME Research Group.

Front Public Health. 2017 Jun 26;5:140. doi: 10.3389/fpubh.2017.00140. eCollection 2017.

40.

Vaginal Candida spp. genomes from women with vulvovaginal candidiasis.

Bradford LL, Chibucos MC, Ma B, Bruno V, Ravel J.

Pathog Dis. 2017 Aug 31;75(6). doi: 10.1093/femspd/ftx061.

41.

Gastric microbiota features associated with cancer risk factors and clinical outcomes: A pilot study in gastric cardia cancer patients from Shanxi, China.

Yu G, Hu N, Wang L, Wang C, Han XY, Humphry M, Ravel J, Abnet CC, Taylor PR, Goldstein AM.

Int J Cancer. 2017 Jul 1;141(1):45-51. doi: 10.1002/ijc.30700. Epub 2017 Apr 3.

42.

A proposed definition of microbiota transplantation for regulatory purposes.

Hoffmann DE, Palumbo FB, Ravel J, Rowthorn V, von Rosenvinge E.

Gut Microbes. 2017 May 4;8(3):208-213. doi: 10.1080/19490976.2017.1293223. Epub 2017 Mar 20.

43.

Distinct Effects of the Cervicovaginal Microbiota and Herpes Simplex Type 2 Infection on Female Genital Tract Immunology.

Shannon B, Gajer P, Yi TJ, Ma B, Humphrys MS, Thomas-Pavanel J, Chieza L, Janakiram P, Saunders M, Tharao W, Huibner S, Shahabi K, Ravel J, Kaul R.

J Infect Dis. 2017 May 1;215(9):1366-1375. doi: 10.1093/infdis/jix088.

44.

Intestinal Barrier Maturation in Very Low Birthweight Infants: Relationship to Feeding and Antibiotic Exposure.

Saleem B, Okogbule-Wonodi AC, Fasano A, Magder LS, Ravel J, Kapoor S, Viscardi RM.

J Pediatr. 2017 Apr;183:31-36.e1. doi: 10.1016/j.jpeds.2017.01.013. Epub 2017 Jan 31.

45.

Association of HPV infection and clearance with cervicovaginal immunology and the vaginal microbiota.

Shannon B, Yi TJ, Perusini S, Gajer P, Ma B, Humphrys MS, Thomas-Pavanel J, Chieza L, Janakiram P, Saunders M, Tharao W, Huibner S, Shahabi K, Ravel J, Rebbapragada A, Kaul R.

Mucosal Immunol. 2017 Sep;10(5):1310-1319. doi: 10.1038/mi.2016.129. Epub 2017 Jan 25.

46.

Rectal microbiota among HIV-uninfected, untreated HIV, and treated HIV-infected in Nigeria.

Nowak RG, Bentzen SM, Ravel J, Crowell TA, Dauda W, Ma B, Liu H, Blattner WA, Baral SD, Charurat ME; TRUSTRV368 Study Group.

AIDS. 2017 Mar 27;31(6):857-862. doi: 10.1097/QAD.0000000000001409.

47.

The effect of cigarette smoking on the oral and nasal microbiota.

Yu G, Phillips S, Gail MH, Goedert JJ, Humphrys MS, Ravel J, Ren Y, Caporaso NE.

Microbiome. 2017 Jan 17;5(1):3. doi: 10.1186/s40168-016-0226-6.

48.

Human oral microbiome and prospective risk for pancreatic cancer: a population-based nested case-control study.

Fan X, Alekseyenko AV, Wu J, Peters BA, Jacobs EJ, Gapstur SM, Purdue MP, Abnet CC, Stolzenberg-Solomon R, Miller G, Ravel J, Hayes RB, Ahn J.

Gut. 2018 Jan;67(1):120-127. doi: 10.1136/gutjnl-2016-312580. Epub 2016 Oct 14.

49.

Evaluation of Buccal Cell Samples for Studies of Oral Microbiota.

Yu G, Phillips S, Gail MH, Goedert JJ, Humphrys M, Ravel J, Ren Y, Caporaso NE.

Cancer Epidemiol Biomarkers Prev. 2017 Feb;26(2):249-253. doi: 10.1158/1055-9965.EPI-16-0538. Epub 2016 Oct 21.

50.

The vaginal mycobiome: A contemporary perspective on fungi in women's health and diseases.

Bradford LL, Ravel J.

Virulence. 2017 Apr 3;8(3):342-351. doi: 10.1080/21505594.2016.1237332. Epub 2016 Sep 22. Review.

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