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Items: 29

1.

Antigen-mediated regulation in monoclonal gammopathies and myeloma.

Nair S, Sng J, Boddupalli CS, Seckinger A, Chesi M, Fulciniti M, Zhang L, Rauniyar N, Lopez M, Neparidze N, Parker T, Munshi NC, Sexton R, Barlogie B, Orlowski R, Bergsagel L, Hose D, Flavell RA, Mistry PK, Meffre E, Dhodapkar MV.

JCI Insight. 2018 Apr 19;3(8). pii: 98259. doi: 10.1172/jci.insight.98259. [Epub ahead of print]

2.

Quantification of Urinary Protein Biomarkers of Autosomal Dominant Polycystic Kidney Disease by Parallel Reaction Monitoring.

Rauniyar N, Yu X, Cantley J, Voss EZ, Belcher J, Colangelo CM, Stone KL, Dahl N, Parikh C, Lam TT, Cantley LG.

Proteomics Clin Appl. 2018 Mar 23:e1700157. doi: 10.1002/prca.201700157. [Epub ahead of print]

PMID:
29573172
3.

MELK Promotes Melanoma Growth by Stimulating the NF-κB Pathway.

Janostiak R, Rauniyar N, Lam TT, Ou J, Zhu LJ, Green MR, Wajapeyee N.

Cell Rep. 2017 Dec 5;21(10):2829-2841. doi: 10.1016/j.celrep.2017.11.033.

4.

Quantitative Analysis of the Proteome Response to the Histone Deacetylase Inhibitor (HDACi) Vorinostat in Niemann-Pick Type C1 disease.

Subramanian K, Rauniyar N, Lavalleé-Adam M, Yates JR 3rd, Balch WE.

Mol Cell Proteomics. 2017 Nov;16(11):1938-1957. doi: 10.1074/mcp.M116.064949. Epub 2017 Aug 31.

PMID:
28860124
5.

Proteomics data on MAP Kinase Kinase 3 knock out bone marrow derived macrophages exposed to cigarette smoke extract.

Srivastava R, Mannam P, Rauniyar N, Lam TT, Luo R, Lee PJ, Srivastava A.

Data Brief. 2017 Jun 7;13:320-325. doi: 10.1016/j.dib.2017.05.049. eCollection 2017 Aug.

6.

Data-Independent Acquisition and Parallel Reaction Monitoring Mass Spectrometry Identification of Serum Biomarkers for Ovarian Cancer.

Rauniyar N, Peng G, Lam TT, Zhao H, Mor G, Williams KR.

Biomark Insights. 2017 Jun 5;12:1177271917710948. doi: 10.1177/1177271917710948. eCollection 2017.

7.

The centriolar satellite protein CCDC66 interacts with CEP290 and functions in cilium formation and trafficking.

Conkar D, Culfa E, Odabasi E, Rauniyar N, Yates JR 3rd, Firat-Karalar EN.

J Cell Sci. 2017 Apr 15;130(8):1450-1462. doi: 10.1242/jcs.196832. Epub 2017 Feb 24.

8.

MKK3 influences mitophagy and is involved in cigarette smoke-induced inflammation.

Mannam P, Rauniyar N, Lam TT, Luo R, Lee PJ, Srivastava A.

Free Radic Biol Med. 2016 Dec;101:102-115. doi: 10.1016/j.freeradbiomed.2016.10.001. Epub 2016 Oct 4.

PMID:
27717867
9.

Parallel Reaction Monitoring: A Targeted Experiment Performed Using High Resolution and High Mass Accuracy Mass Spectrometry.

Rauniyar N.

Int J Mol Sci. 2015 Dec 2;16(12):28566-81. doi: 10.3390/ijms161226120. Review.

10.

Identification of Open Stomata1-Interacting Proteins Reveals Interactions with Sucrose Non-fermenting1-Related Protein Kinases2 and with Type 2A Protein Phosphatases That Function in Abscisic Acid Responses.

Waadt R, Manalansan B, Rauniyar N, Munemasa S, Booker MA, Brandt B, Waadt C, Nusinow DA, Kay SA, Kunz HH, Schumacher K, DeLong A, Yates JR 3rd, Schroeder JI.

Plant Physiol. 2015 Sep;169(1):760-79. doi: 10.1104/pp.15.00575. Epub 2015 Jul 14.

11.

Quantitative Proteomics of Human Fibroblasts with I1061T Mutation in Niemann-Pick C1 (NPC1) Protein Provides Insights into the Disease Pathogenesis.

Rauniyar N, Subramanian K, Lavallée-Adam M, Martínez-Bartolomé S, Balch WE, Yates JR 3rd.

Mol Cell Proteomics. 2015 Jul;14(7):1734-49. doi: 10.1074/mcp.M114.045609. Epub 2015 Apr 14.

12.

Isobaric labeling-based relative quantification in shotgun proteomics.

Rauniyar N, Yates JR 3rd.

J Proteome Res. 2014 Dec 5;13(12):5293-309. doi: 10.1021/pr500880b. Epub 2014 Nov 4. Review.

13.

PSEA-Quant: a protein set enrichment analysis on label-free and label-based protein quantification data.

Lavallée-Adam M, Rauniyar N, McClatchy DB, Yates JR 3rd.

J Proteome Res. 2014 Dec 5;13(12):5496-509. doi: 10.1021/pr500473n. Epub 2014 Oct 16.

14.

Quantitative proteomic profiling reveals differentially regulated proteins in cystic fibrosis cells.

Rauniyar N, Gupta V, Balch WE, Yates JR 3rd.

J Proteome Res. 2014 Nov 7;13(11):4668-75. doi: 10.1021/pr500370g. Epub 2014 May 21.

15.

Census 2: isobaric labeling data analysis.

Park SK, Aslanian A, McClatchy DB, Han X, Shah H, Singh M, Rauniyar N, Moresco JJ, Pinto AF, Diedrich JK, Delahunty C, Yates JR 3rd.

Bioinformatics. 2014 Aug 1;30(15):2208-9. doi: 10.1093/bioinformatics/btu151. Epub 2014 Mar 28.

16.

Proximity interactions among centrosome components identify regulators of centriole duplication.

Firat-Karalar EN, Rauniyar N, Yates JR 3rd, Stearns T.

Curr Biol. 2014 Mar 17;24(6):664-70. doi: 10.1016/j.cub.2014.01.067. Epub 2014 Mar 6.

17.

Proteomic analysis of signaling network regulation in renal cell carcinomas with differential hypoxia-inducible factor-2α expression.

Nagaprashantha LD, Talamantes T, Singhal J, Guo J, Vatsyayan R, Rauniyar N, Awasthi S, Singhal SS, Prokai L.

PLoS One. 2013 Aug 5;8(8):e71654. doi: 10.1371/journal.pone.0071654. Print 2013.

18.

Stable isotope labeling of mammals (SILAM) for in vivo quantitative proteomic analysis.

Rauniyar N, McClatchy DB, Yates JR 3rd.

Methods. 2013 Jun 15;61(3):260-8. doi: 10.1016/j.ymeth.2013.03.008. Epub 2013 Mar 20.

PMID:
23523555
19.

Comparison of protein expression ratios observed by sixplex and duplex TMT labeling method.

Rauniyar N, Gao B, McClatchy DB, Yates JR 3rd.

J Proteome Res. 2013 Feb 1;12(2):1031-9. doi: 10.1021/pr3008896. Epub 2012 Dec 24.

21.

Protein targets for carbonylation by 4-hydroxy-2-nonenal in rat liver mitochondria.

Guo J, Prokai-Tatrai K, Nguyen V, Rauniyar N, Ughy B, Prokai L.

J Proteomics. 2011 Oct 19;74(11):2370-9. doi: 10.1016/j.jprot.2011.07.009. Epub 2011 Jul 23.

22.

Mechanisms of 4-hydroxy-2-nonenal induced pro- and anti-apoptotic signaling.

Chaudhary P, Sharma R, Sharma A, Vatsyayan R, Yadav S, Singhal SS, Rauniyar N, Prokai L, Awasthi S, Awasthi YC.

Biochemistry. 2010 Jul 27;49(29):6263-75. doi: 10.1021/bi100517x.

23.
25.

Rapid label-free identification of estrogen-induced differential protein expression in vivo from mouse brain and uterine tissue.

Prokai L, Stevens SM Jr, Rauniyar N, Nguyen V.

J Proteome Res. 2009 Aug;8(8):3862-71. doi: 10.1021/pr900083v.

26.

Novel gene C17orf37 in 17q12 amplicon promotes migration and invasion of prostate cancer cells.

Dasgupta S, Wasson LM, Rauniyar N, Prokai L, Borejdo J, Vishwanatha JK.

Oncogene. 2009 Aug 13;28(32):2860-72. doi: 10.1038/onc.2009.145. Epub 2009 Jun 8.

29.

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