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Items: 1 to 50 of 115

1.

Population Genetic Analysis of the Estonian Native Horse Suggests Diverse and Distinct Genetics, Ancient Origin and Contribution from Unique Patrilines.

Castaneda C, Juras R, Khanshour A, Randlaht I, Wallner B, Rigler D, Lindgren G, Raudsepp T, Cothran EG.

Genes (Basel). 2019 Aug 20;10(8). pii: E629. doi: 10.3390/genes10080629.

2.

Chromosome-Level Alpaca Reference Genome VicPac3.1 Improves Genomic Insight Into the Biology of New World Camelids.

Richardson MF, Munyard K, Croft LJ, Allnutt TR, Jackling F, Alshanbari F, Jevit M, Wright GA, Cransberg R, Tibary A, Perelman P, Appleton B, Raudsepp T.

Front Genet. 2019 Jun 21;10:586. doi: 10.3389/fgene.2019.00586. eCollection 2019.

3.

Chromosomal Localization of Candidate Genes for Fiber Growth and Color in Alpaca (Vicugna pacos).

Mendoza MN, Raudsepp T, Alshanbari F, Gutiérrez G, Ponce de León FA.

Front Genet. 2019 Jun 19;10:583. doi: 10.3389/fgene.2019.00583. eCollection 2019.

4.

An Autosomal Translocation 73,XY,t(12;20)(q11;q11) in an Infertile Male Llama (Lama glama) With Teratozoospermia.

Baily MP, Avila F, Das PJ, Kutzler MA, Raudsepp T.

Front Genet. 2019 Apr 16;10:344. doi: 10.3389/fgene.2019.00344. eCollection 2019.

5.

Comparative FISH-Mapping of MC1R, ASIP, and TYRP1 in New and Old World Camelids and Association Analysis With Coat Color Phenotypes in the Dromedary (Camelus dromedarius).

Alshanbari F, Castaneda C, Juras R, Hillhouse A, Mendoza MN, Gutiérrez GA, Ponce de León FA, Raudsepp T.

Front Genet. 2019 Apr 16;10:340. doi: 10.3389/fgene.2019.00340. eCollection 2019.

6.

The horse Y chromosome as an informative marker for tracing sire lines.

Felkel S, Vogl C, Rigler D, Dobretsberger V, Chowdhary BP, Distl O, Fries R, Jagannathan V, Janečka JE, Leeb T, Lindgren G, McCue M, Metzger J, Neuditschko M, Rattei T, Raudsepp T, Rieder S, Rubin CJ, Schaefer R, Schlötterer C, Thaller G, Tetens J, Velie B, Brem G, Wallner B.

Sci Rep. 2019 Apr 15;9(1):6095. doi: 10.1038/s41598-019-42640-w.

7.

Evolutionary conservation of Y Chromosome ampliconic gene families despite extensive structural variation.

Brashear WA, Raudsepp T, Murphy WJ.

Genome Res. 2018 Dec;28(12):1841-1851. doi: 10.1101/gr.237586.118. Epub 2018 Oct 31.

8.

Generation of an equine biobank to be used for Functional Annotation of Animal Genomes project.

Burns EN, Bordbari MH, Mienaltowski MJ, Affolter VK, Barro MV, Gianino F, Gianino G, Giulotto E, Kalbfleisch TS, Katzman SA, Lassaline M, Leeb T, Mack M, Müller EJ, MacLeod JN, Ming-Whitfield B, Alanis CR, Raudsepp T, Scott E, Vig S, Zhou H, Petersen JL, Bellone RR, Finno CJ.

Anim Genet. 2018 Dec;49(6):564-570. doi: 10.1111/age.12717. Epub 2018 Oct 11.

PMID:
30311254
9.

Comparative Chromosome Painting in Genets (Carnivora, Viverridae, Genetta), the Only Known Feliforms with a Highly Rearranged Karyotype.

Adega F, Matoso Silva R, Kjöllerström HJ, Vercammen P, Raudsepp T, Collares-Pereira MJ, Fernandes C, do Mar Oom M, Chaves R.

Cytogenet Genome Res. 2018 Aug 8. doi: 10.1159/000491868. [Epub ahead of print]

PMID:
30086546
10.

Pathology in Practice.

Knight CG, Ghosh S, Pang DSJ, Gunn M, Raudsepp T, Meyers-Wallen VN.

J Am Vet Med Assoc. 2018 Aug 15;253(4):427-429. doi: 10.2460/javma.253.4.427. No abstract available.

PMID:
30058976
11.

Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes.

Janečka JE, Davis BW, Ghosh S, Paria N, Das PJ, Orlando L, Schubert M, Nielsen MK, Stout TAE, Brashear W, Li G, Johnson CD, Metz RP, Zadjali AMA, Love CC, Varner DD, Bellott DW, Murphy WJ, Chowdhary BP, Raudsepp T.

Nat Commun. 2018 Jul 27;9(1):2945. doi: 10.1038/s41467-018-05290-6.

12.

Long-term expansion of primary equine keratinocytes that maintain the ability to differentiate into stratified epidermis.

Alkhilaiwi F, Wang L, Zhou D, Raudsepp T, Ghosh S, Paul S, Palechor-Ceron N, Brandt S, Luff J, Liu X, Schlegel R, Yuan H.

Stem Cell Res Ther. 2018 Jul 4;9(1):181. doi: 10.1186/s13287-018-0918-x.

13.

Construction of two whole genome radiation hybrid panels for dromedary (Camelus dromedarius): 5000RAD and 15000RAD.

Perelman PL, Pichler R, Gaggl A, Larkin DM, Raudsepp T, Alshanbari F, Holl HM, Brooks SA, Burger PA, Periasamy K.

Sci Rep. 2018 Jan 31;8(1):1982. doi: 10.1038/s41598-018-20223-5.

14.

FGF4 retrogene on CFA12 is responsible for chondrodystrophy and intervertebral disc disease in dogs.

Brown EA, Dickinson PJ, Mansour T, Sturges BK, Aguilar M, Young AE, Korff C, Lind J, Ettinger CL, Varon S, Pollard R, Brown CT, Raudsepp T, Bannasch DL.

Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):11476-11481. doi: 10.1073/pnas.1709082114. Epub 2017 Oct 11.

15.

Validation of a candidate causative mutation for white spotting in donkeys.

Fenn DJ, Raudsepp T, Cothran EG, Hamilton NA, Haase B.

Anim Genet. 2017 Feb;48(1):124-125. doi: 10.1111/age.12494. Epub 2016 Sep 9. No abstract available.

PMID:
27611565
16.

Large Deletions at the SHOX Locus in the Pseudoautosomal Region Are Associated with Skeletal Atavism in Shetland Ponies.

Rafati N, Andersson LS, Mikko S, Feng C, Raudsepp T, Pettersson J, Janecka J, Wattle O, Ameur A, Thyreen G, Eberth J, Huddleston J, Malig M, Bailey E, Eichler EE, Dalin G, Chowdary B, Andersson L, Lindgren G, Rubin CJ.

G3 (Bethesda). 2016 Jul 7;6(7):2213-23. doi: 10.1534/g3.116.029645.

17.

Fertility Assessment in Sorraia Stallions by Sperm-Fish and Fkbp6 Genotyping.

Kjöllerström HJ, do Mar Oom M, Chowdhary BP, Raudsepp T.

Reprod Domest Anim. 2016 Jun;51(3):351-9. doi: 10.1111/rda.12686. Epub 2016 Mar 28.

PMID:
27020485
18.

Analysis of genomic copy number variation in equine recurrent airway obstruction (heaves).

Ghosh S, Das PJ, McQueen CM, Gerber V, Swiderski CE, Lavoie JP, Chowdhary BP, Raudsepp T.

Anim Genet. 2016 Jun;47(3):334-44. doi: 10.1111/age.12426. Epub 2016 Mar 1.

PMID:
26932307
19.

Skeletal variation in Tennessee Walking Horses maps to the LCORL/NCAPG gene region.

Staiger EA, Al Abri MA, Pflug KM, Kalla SE, Ainsworth DM, Miller D, Raudsepp T, Sutter NB, Brooks SA.

Physiol Genomics. 2016 May;48(5):325-35. doi: 10.1152/physiolgenomics.00100.2015. Epub 2016 Mar 1.

PMID:
26931356
20.

Comparative Cytogenetics of the Congo African Grey Parrot (Psittacus erithacus).

Seibold-Torres C, Owens E, Chowdhary R, Ferguson-Smith MA, Tizard I, Raudsepp T.

Cytogenet Genome Res. 2015;147(2-3):144-53. doi: 10.1159/000444136. Epub 2016 Feb 20.

21.

Chromosome Aberrations and Fertility Disorders in Domestic Animals.

Raudsepp T, Chowdhary BP.

Annu Rev Anim Biosci. 2016;4:15-43. doi: 10.1146/annurev-animal-021815-111239. Review.

PMID:
26884101
22.

The Eutherian Pseudoautosomal Region.

Raudsepp T, Chowdhary BP.

Cytogenet Genome Res. 2015;147(2-3):81-94. doi: 10.1159/000443157. Epub 2016 Jan 6. Review.

23.

A Non-Reciprocal Autosomal Translocation 64,XX, t(4;10)(q21;p15) in an Arabian Mare with Repeated Early Embryonic Loss.

Ghosh S, Das PJ, Avila F, Thwaits BK, Chowdhary BP, Raudsepp T.

Reprod Domest Anim. 2016 Feb;51(1):171-4. doi: 10.1111/rda.12636. Epub 2015 Nov 6.

PMID:
26547799
24.

A comprehensive whole-genome integrated cytogenetic map for the alpaca (Lama pacos).

Avila F, Baily MP, Perelman P, Das PJ, Pontius J, Chowdhary R, Owens E, Johnson WE, Merriwether DA, Raudsepp T.

Cytogenet Genome Res. 2014;144(3):196-207. doi: 10.1159/000370329. Epub 2015 Feb 6.

PMID:
25662411
25.

A cytogenetic and comparative map of camelid chromosome 36 and the minute in alpacas.

Avila F, Baily MP, Merriwether DA, Trifonov VA, Rubes J, Kutzler MA, Chowdhary R, Janečka J, Raudsepp T.

Chromosome Res. 2015 Jun;23(2):237-51. doi: 10.1007/s10577-014-9463-3. Epub 2015 Jan 30.

PMID:
25634498
26.

The success factors of scaling-up Estonian sexual and reproductive health youth clinic network--from a grassroots initiative to a national programme 1991-2013.

Kempers J, Ketting E, Chandra-Mouli V, Raudsepp T.

Reprod Health. 2015 Jan 8;12:2. doi: 10.1186/1742-4755-12-2. Review.

27.

Establishment, characterization, and toxicological application of loggerhead sea turtle (Caretta caretta) primary skin fibroblast cell cultures.

Webb SJ, Zychowski GV, Bauman SW, Higgins BM, Raudsepp T, Gollahon LS, Wooten KJ, Cole JM, Godard-Codding C.

Environ Sci Technol. 2014 Dec 16;48(24):14728-37. doi: 10.1021/es504182e. Epub 2014 Dec 3.

PMID:
25384208
28.

Copy number variation in the horse genome.

Ghosh S, Qu Z, Das PJ, Fang E, Juras R, Cothran EG, McDonell S, Kenney DG, Lear TL, Adelson DL, Chowdhary BP, Raudsepp T.

PLoS Genet. 2014 Oct 23;10(10):e1004712. doi: 10.1371/journal.pgen.1004712. eCollection 2014 Oct.

29.

Male horse meiosis: metaphase I chromosome configuration and chiasmata distribution.

Al-Jaru A, Goodwin W, Skidmore J, Raudsepp T, Khazanehdari K.

Cytogenet Genome Res. 2014;143(4):225-31. doi: 10.1159/000365910. Epub 2014 Aug 29.

PMID:
25196893
30.

Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution.

Li G, Davis BW, Raudsepp T, Pearks Wilkerson AJ, Mason VC, Ferguson-Smith M, O'Brien PC, Waters PD, Murphy WJ.

Genome Res. 2013 Sep;23(9):1486-95. doi: 10.1101/gr.154286.112. Epub 2013 Jun 20.

31.

Reshaping antibody diversity.

Wang F, Ekiert DC, Ahmad I, Yu W, Zhang Y, Bazirgan O, Torkamani A, Raudsepp T, Mwangi W, Criscitiello MF, Wilson IA, Schultz PG, Smider VV.

Cell. 2013 Jun 6;153(6):1379-93. doi: 10.1016/j.cell.2013.04.049.

32.

Comparative organization and gene expression profiles of the porcine pseudoautosomal region.

Das PJ, Mishra DK, Ghosh S, Avila F, Johnson GA, Chowdhary BP, Raudsepp T.

Cytogenet Genome Res. 2013;141(1):26-36. doi: 10.1159/000351310. Epub 2013 May 30.

33.

A multi-platform draft de novo genome assembly and comparative analysis for the Scarlet Macaw (Ara macao).

Seabury CM, Dowd SE, Seabury PM, Raudsepp T, Brightsmith DJ, Liboriussen P, Halley Y, Fisher CA, Owens E, Viswanathan G, Tizard IR.

PLoS One. 2013 May 8;8(5):e62415. doi: 10.1371/journal.pone.0062415. Print 2013.

34.

Stallion sperm transcriptome comprises functionally coherent coding and regulatory RNAs as revealed by microarray analysis and RNA-seq.

Das PJ, McCarthy F, Vishnoi M, Paria N, Gresham C, Li G, Kachroo P, Sudderth AK, Teague S, Love CC, Varner DD, Chowdhary BP, Raudsepp T.

PLoS One. 2013;8(2):e56535. doi: 10.1371/journal.pone.0056535. Epub 2013 Feb 11.

35.

Genome-wide association study implicates testis-sperm specific FKBP6 as a susceptibility locus for impaired acrosome reaction in stallions.

Raudsepp T, McCue ME, Das PJ, Dobson L, Vishnoi M, Fritz KL, Schaefer R, Rendahl AK, Derr JN, Love CC, Varner DD, Chowdhary BP.

PLoS Genet. 2012;8(12):e1003139. doi: 10.1371/journal.pgen.1003139. Epub 2012 Dec 20.

36.

A high-resolution radiation hybrid map of the river buffalo major histocompatibility complex and comparison with BoLA.

Stafuzza NB, Greco AJ, Grant JR, Abbey CA, Gill CA, Raudsepp T, Skow LC, Womack JE, Riggs PK, Amaral ME.

Anim Genet. 2013 Aug;44(4):369-76. doi: 10.1111/age.12015. Epub 2012 Dec 6.

PMID:
23216319
37.

Development and application of camelid molecular cytogenetic tools.

Avila F, Das PJ, Kutzler M, Owens E, Perelman P, Rubes J, Hornak M, Johnson WE, Raudsepp T.

J Hered. 2014 Nov-Dec;105(6):858-69. doi: 10.1093/jhered/ess067. Epub 2012 Oct 29.

38.

Ovarian dysgenesis in an alpaca with a minute chromosome 36.

Fellows E, Kutzler M, Avila F, Das PJ, Raudsepp T.

J Hered. 2014 Nov-Dec;105(6):870-4. doi: 10.1093/jhered/ess069. Epub 2012 Sep 24.

PMID:
23008444
39.

Theriogenology question of the month. Segmental aplasia of the uterine horn with mucometra.

Ferrer MS, Anderson DE, Jones ML, Miesner MD, Raudsepp T, Avila F, Kutzler MA.

J Am Vet Med Assoc. 2012 Sep 15;241(6):697-700. doi: 10.2460/javma.241.6.697. No abstract available.

PMID:
22947151
40.

Cytogenetic and molecular characterization of Y isochromosome in a 63XO/64Xi(Yq) mosaic karyotype of an intersex horse.

Das PJ, Lyle SK, Beehan D, Chowdhary BP, Raudsepp T.

Sex Dev. 2012;6(1-3):117-27. doi: 10.1159/000332212. Epub 2011 Oct 14.

PMID:
22005008
41.

The pseudoautosomal region and sex chromosome aneuploidies in domestic species.

Raudsepp T, Das PJ, Avila F, Chowdhary BP.

Sex Dev. 2012;6(1-3):72-83. doi: 10.1159/000330627. Epub 2011 Aug 26. Review.

42.

A gene catalogue of the euchromatic male-specific region of the horse Y chromosome: comparison with human and other mammals.

Paria N, Raudsepp T, Pearks Wilkerson AJ, O'Brien PC, Ferguson-Smith MA, Love CC, Arnold C, Rakestraw P, Murphy WJ, Chowdhary BP.

PLoS One. 2011;6(7):e21374. doi: 10.1371/journal.pone.0021374. Epub 2011 Jul 25.

43.

Molecular heterogeneity of XY sex reversal in horses.

Raudsepp T, Durkin K, Lear TL, Das PJ, Avila F, Kachroo P, Chowdhary BP.

Anim Genet. 2010 Dec;41 Suppl 2:41-52. doi: 10.1111/j.1365-2052.2010.02101.x.

PMID:
21070275
44.

Total RNA isolation from stallion sperm and testis biopsies.

Das PJ, Paria N, Gustafson-Seabury A, Vishnoi M, Chaki SP, Love CC, Varner DD, Chowdhary BP, Raudsepp T.

Theriogenology. 2010 Oct 1;74(6):1099-1106, 1106e1-2. doi: 10.1016/j.theriogenology.2010.04.023. Epub 2010 Jul 7.

PMID:
20615536
45.

Characterization of the bovine pseudoautosomal region and comparison with sheep, goat, and other mammalian pseudoautosomal regions.

Das PJ, Chowdhary BP, Raudsepp T.

Cytogenet Genome Res. 2009;126(1-2):139-47. doi: 10.1159/000245913. Epub 2009 Dec 9.

PMID:
20016163
46.

Genome sequence, comparative analysis, and population genetics of the domestic horse.

Wade CM, Giulotto E, Sigurdsson S, Zoli M, Gnerre S, Imsland F, Lear TL, Adelson DL, Bailey E, Bellone RR, Blöcker H, Distl O, Edgar RC, Garber M, Leeb T, Mauceli E, MacLeod JN, Penedo MC, Raison JM, Sharpe T, Vogel J, Andersson L, Antczak DF, Biagi T, Binns MM, Chowdhary BP, Coleman SJ, Della Valle G, Fryc S, Guérin G, Hasegawa T, Hill EW, Jurka J, Kiialainen A, Lindgren G, Liu J, Magnani E, Mickelson JR, Murray J, Nergadze SG, Onofrio R, Pedroni S, Piras MF, Raudsepp T, Rocchi M, Røed KH, Ryder OA, Searle S, Skow L, Swinburne JE, Syvänen AC, Tozaki T, Valberg SJ, Vaudin M, White JR, Zody MC; Broad Institute Genome Sequencing Platform; Broad Institute Whole Genome Assembly Team, Lander ES, Lindblad-Toh K.

Science. 2009 Nov 6;326(5954):865-7. doi: 10.1126/science.1178158.

47.

The 450-band resolution G- and R-banded standard karyotype of the donkey (Equus asinus, 2n = 62).

Di Meo GP, Perucatti A, Peretti V, Incarnato D, Ciotola F, Liotta L, Raudsepp T, Di Berardino D, Chowdhary B, Iannuzzi L.

Cytogenet Genome Res. 2009;125(4):266-71. doi: 10.1159/000235932. Epub 2009 Oct 27.

PMID:
19864889
48.

Blood chimerism confounds genetic relative susceptibility testing for classical scrapie in sheep.

Schneider DA, Tibary A, Raudsepp T, Das PJ, O'Rourke KI.

J Vet Diagn Invest. 2009 May;21(3):295-305.

PMID:
19407081
49.

A high resolution RH map of the bovine major histocompatibility complex.

Brinkmeyer-Langford CL, Childers CP, Fritz KL, Gustafson-Seabury AL, Cothran M, Raudsepp T, Womack JE, Skow LC.

BMC Genomics. 2009 Apr 24;10:182. doi: 10.1186/1471-2164-10-182.

50.

Genetics of Sex-linked yellow in the Syrian hamster.

Alizadeh A, Hong LZ, Kaelin CB, Raudsepp T, Manuel H, Barsh GS.

Genetics. 2009 Apr;181(4):1427-36. doi: 10.1534/genetics.108.095018. Epub 2009 Feb 2.

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