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Items: 1 to 50 of 109

1.

NAD+ cleavage activity by animal and plant TIR domains in cell death pathways.

Horsefield S, Burdett H, Zhang X, Manik MK, Shi Y, Chen J, Qi T, Gilley J, Lai JS, Rank MX, Casey LW, Gu W, Ericsson DJ, Foley G, Hughes RO, Bosanac T, von Itzstein M, Rathjen JP, Nanson JD, Boden M, Dry IB, Williams SJ, Staskawicz BJ, Coleman MP, Ve T, Dodds PN, Kobe B.

Science. 2019 Aug 23;365(6455):793-799. doi: 10.1126/science.aax1911.

PMID:
31439792
2.

Development of a Rapid in planta BioID System as a Probe for Plasma Membrane-Associated Immunity Proteins.

Conlan B, Stoll T, Gorman JJ, Saur I, Rathjen JP.

Front Plant Sci. 2018 Dec 18;9:1882. doi: 10.3389/fpls.2018.01882. eCollection 2018.

3.

Harnessing the MinION: An example of how to establish long-read sequencing in a laboratory using challenging plant tissue from Eucalyptus pauciflora.

Schalamun M, Nagar R, Kainer D, Beavan E, Eccles D, Rathjen JP, Lanfear R, Schwessinger B.

Mol Ecol Resour. 2019 Jan;19(1):77-89. doi: 10.1111/1755-0998.12938. Epub 2018 Oct 5.

PMID:
30118581
4.

Biochar and lignite affect H+-ATPase and H+-PPase activities in root tonoplast and nutrient contents of mung bean under salt stress.

Torabian S, Farhangi-Abriz S, Rathjen J.

Plant Physiol Biochem. 2018 Aug;129:141-149. doi: 10.1016/j.plaphy.2018.05.030. Epub 2018 May 31.

PMID:
29879587
5.

Differential Suppression of Nicotiana benthamiana Innate Immune Responses by Transiently Expressed Pseudomonas syringae Type III Effectors.

Gimenez-Ibanez S, Hann DR, Chang JH, Segonzac C, Boller T, Rathjen JP.

Front Plant Sci. 2018 May 23;9:688. doi: 10.3389/fpls.2018.00688. eCollection 2018.

6.

Physiological oxygen culture reveals retention of metabolic memory in human induced pluripotent stem cells.

Harvey AJ, O'Brien C, Lambshead J, Sheedy JR, Rathjen J, Laslett AL, Gardner DK.

PLoS One. 2018 Mar 15;13(3):e0193949. doi: 10.1371/journal.pone.0193949. eCollection 2018.

7.

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity.

Schwessinger B, Sperschneider J, Cuddy WS, Garnica DP, Miller ME, Taylor JM, Dodds PN, Figueroa M, Park RF, Rathjen JP.

MBio. 2018 Feb 20;9(1). pii: e02275-17. doi: 10.1128/mBio.02275-17.

8.

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust.

Miller ME, Zhang Y, Omidvar V, Sperschneider J, Schwessinger B, Raley C, Palmer JM, Garnica D, Upadhyaya N, Rathjen J, Taylor JM, Park RF, Dodds PN, Hirsch CD, Kianian SF, Figueroa M.

MBio. 2018 Feb 20;9(1). pii: e01650-17. doi: 10.1128/mBio.01650-17.

9.

Dancing with the Stars: An Asterid NLR Family.

Rathjen JP, Dodds PN.

Trends Plant Sci. 2017 Dec;22(12):1003-1005. doi: 10.1016/j.tplants.2017.09.018. Epub 2017 Oct 10.

PMID:
29029827
10.

Long read reference genome-free reconstruction of a full-length transcriptome from Astragalus membranaceus reveals transcript variants involved in bioactive compound biosynthesis.

Li J, Harata-Lee Y, Denton MD, Feng Q, Rathjen JR, Qu Z, Adelson DL.

Cell Discov. 2017 Aug 29;3:17031. doi: 10.1038/celldisc.2017.31. eCollection 2017.

11.

Apoplastic Sugar Extraction and Quantification from Wheat Leaves Infected with Biotrophic Fungi.

Roman-Reyna V, Rathjen JP.

Methods Mol Biol. 2017;1659:125-134. doi: 10.1007/978-1-4939-7249-4_11.

PMID:
28856646
12.

Extraction of High Molecular Weight DNA from Fungal Rust Spores for Long Read Sequencing.

Schwessinger B, Rathjen JP.

Methods Mol Biol. 2017;1659:49-57. doi: 10.1007/978-1-4939-7249-4_5.

PMID:
28856640
13.

Ethics and Governance of Stem Cell Banks.

Chalmers D, Rathjen P, Rathjen J, Nicol D.

Methods Mol Biol. 2017;1590:99-112. doi: 10.1007/978-1-4939-6921-0_7. Review.

PMID:
28353264
14.

A chloroplast retrograde signal, 3'-phosphoadenosine 5'-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination.

Pornsiriwong W, Estavillo GM, Chan KX, Tee EE, Ganguly D, Crisp PA, Phua SY, Zhao C, Qiu J, Park J, Yong MT, Nisar N, Yadav AK, Schwessinger B, Rathjen J, Cazzonelli CI, Wilson PB, Gilliham M, Chen ZH, Pogson BJ.

Elife. 2017 Mar 21;6. pii: e23361. doi: 10.7554/eLife.23361.

15.

Src Family Kinases and p38 Mitogen-Activated Protein Kinases Regulate Pluripotent Cell Differentiation in Culture.

Tan BS, Kwek J, Wong CK, Saner NJ, Yap C, Felquer F, Morris MB, Gardner DK, Rathjen PD, Rathjen J.

PLoS One. 2016 Oct 10;11(10):e0163244. doi: 10.1371/journal.pone.0163244. eCollection 2016.

16.

Regulation of amino acid transporters in pluripotent cell populations in the embryo and in culture; novel roles for sodium-coupled neutral amino acid transporters.

Tan BSN, Rathjen PD, Harvey AJ, Gardner DK, Rathjen J.

Mech Dev. 2016 Aug;141:32-39. doi: 10.1016/j.mod.2016.06.003. Epub 2016 Jun 30.

17.

Fungal phytopathogens encode functional homologues of plant rapid alkalinization factor (RALF) peptides.

Thynne E, Saur IML, Simbaqueba J, Ogilvie HA, Gonzalez-Cendales Y, Mead O, Taranto A, Catanzariti AM, McDonald MC, Schwessinger B, Jones DA, Rathjen JP, Solomon PS.

Mol Plant Pathol. 2017 Aug;18(6):811-824. doi: 10.1111/mpp.12444. Epub 2016 Sep 19.

18.

NbCSPR underlies age-dependent immune responses to bacterial cold shock protein in Nicotiana benthamiana.

Saur IM, Kadota Y, Sklenar J, Holton NJ, Smakowska E, Belkhadir Y, Zipfel C, Rathjen JP.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):3389-94. doi: 10.1073/pnas.1511847113. Epub 2016 Mar 4.

19.

Metaboloepigenetic Regulation of Pluripotent Stem Cells.

Harvey AJ, Rathjen J, Gardner DK.

Stem Cells Int. 2016;2016:1816525. doi: 10.1155/2016/1816525. Epub 2015 Dec 29. Review.

20.

High levels of cyclic-di-GMP in plant-associated Pseudomonas correlate with evasion of plant immunity.

Pfeilmeier S, Saur IM, Rathjen JP, Zipfel C, Malone JG.

Mol Plant Pathol. 2016 May;17(4):521-31. doi: 10.1111/mpp.12297. Epub 2015 Oct 8.

21.

Distinct profiles of human embryonic stem cell metabolism and mitochondria identified by oxygen.

Lees JG, Rathjen J, Sheedy JR, Gardner DK, Harvey AJ.

Reproduction. 2015 Oct;150(4):367-82. doi: 10.1530/REP-14-0633. Epub 2015 Jul 9.

PMID:
26159831
22.

Changing SERKs and priorities during plant life.

Schwessinger B, Rathjen JP.

Trends Plant Sci. 2015 Sep;20(9):531-3. doi: 10.1016/j.tplants.2015.06.006. Epub 2015 Jun 26.

PMID:
26124000
23.

The N-terminal domain of the tomato immune protein Prf contains multiple homotypic and Pto kinase interaction sites.

Saur IM, Conlan BF, Rathjen JP.

J Biol Chem. 2015 May 1;290(18):11258-67. doi: 10.1074/jbc.M114.616532. Epub 2015 Mar 19.

24.

Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes.

Upadhyaya NM, Garnica DP, Karaoglu H, Sperschneider J, Nemri A, Xu B, Mago R, Cuomo CA, Rathjen JP, Park RF, Ellis JG, Dodds PN.

Front Plant Sci. 2015 Jan 8;5:759. doi: 10.3389/fpls.2014.00759. eCollection 2014.

25.

The calcium-dependent protein kinase CPK28 buffers plant immunity and regulates BIK1 turnover.

Monaghan J, Matschi S, Shorinola O, Rovenich H, Matei A, Segonzac C, Malinovsky FG, Rathjen JP, MacLean D, Romeis T, Zipfel C.

Cell Host Microbe. 2014 Nov 12;16(5):605-15. doi: 10.1016/j.chom.2014.10.007. Epub 2014 Nov 12.

26.

The ins and outs of rust haustoria.

Garnica DP, Nemri A, Upadhyaya NM, Rathjen JP, Dodds PN.

PLoS Pathog. 2014 Sep 11;10(9):e1004329. doi: 10.1371/journal.ppat.1004329. eCollection 2014 Sep. No abstract available.

27.

Oxygen modulates human embryonic stem cell metabolism in the absence of changes in self-renewal.

Harvey AJ, Rathjen J, Yu LJ, Gardner DK.

Reprod Fertil Dev. 2016 Mar;28(4):446-58. doi: 10.1071/RD14013.

PMID:
25145274
28.

Endoderm complexity in the mouse gastrula is revealed through the expression of spink3.

Goh HN, Rathjen PD, Familari M, Rathjen J.

Biores Open Access. 2014 Jun 1;3(3):98-109. doi: 10.1089/biores.2014.0010.

29.

The changing of the guard: the Pto/Prf receptor complex of tomato and pathogen recognition.

Ntoukakis V, Saur IM, Conlan B, Rathjen JP.

Curr Opin Plant Biol. 2014 Aug;20:69-74. doi: 10.1016/j.pbi.2014.04.002. Epub 2014 May 20. Review.

PMID:
24845576
30.

Purification of fungal haustoria from infected plant tissue by flow cytometry.

Garnica DP, Rathjen JP.

Methods Mol Biol. 2014;1127:103-10. doi: 10.1007/978-1-62703-986-4_8.

PMID:
24643555
31.

Identification of post-translational modifications of plant protein complexes.

Piquerez SJ, Balmuth AL, Sklenář J, Jones AM, Rathjen JP, Ntoukakis V.

J Vis Exp. 2014 Feb 22;(84):e51095. doi: 10.3791/51095.

32.

Regulation of pluripotent cell differentiation by a small molecule, staurosporine.

Hughes JN, Wong CK, Lau KX, Rathjen PD, Rathjen J.

Differentiation. 2014 Mar-Apr;87(3-4):101-10. doi: 10.1016/j.diff.2014.01.001. Epub 2014 Feb 28.

PMID:
24582574
33.

The bacterial effector HopX1 targets JAZ transcriptional repressors to activate jasmonate signaling and promote infection in Arabidopsis.

Gimenez-Ibanez S, Boter M, Fernández-Barbero G, Chini A, Rathjen JP, Solano R.

PLoS Biol. 2014 Feb 18;12(2):e1001792. doi: 10.1371/journal.pbio.1001792. eCollection 2014 Feb.

34.

The formation of proximal and distal definitive endoderm populations in culture requires p38 MAPK activity.

Yap C, Goh HN, Familari M, Rathjen PD, Rathjen J.

J Cell Sci. 2014 May 15;127(Pt 10):2204-16. doi: 10.1242/jcs.134502. Epub 2014 Jan 30.

35.

The Pseudomonas type III effector HopQ1 activates cytokinin signaling and interferes with plant innate immunity.

Hann DR, Domínguez-Ferreras A, Motyka V, Dobrev PI, Schornack S, Jehle A, Felix G, Chinchilla D, Rathjen JP, Boller T.

New Phytol. 2014 Jan;201(2):585-98. doi: 10.1111/nph.12544. Epub 2013 Oct 11.

36.

Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing.

Garnica DP, Upadhyaya NM, Dodds PN, Rathjen JP.

PLoS One. 2013 Jun 26;8(6):e67150. doi: 10.1371/journal.pone.0067150. Print 2013.

37.

Culture environment regulates amino acid turnover and glucose utilisation in human ES cells.

Rathjen J, Yeo C, Yap C, Tan BS, Rathjen PD, Gardner DK.

Reprod Fertil Dev. 2014 Jun;26(5):703-16. doi: 10.1071/RD12276.

PMID:
23759283
38.

Pseudomonas fluorescens NZI7 repels grazing by C. elegans, a natural predator.

Burlinson P, Studholme D, Cambray-Young J, Heavens D, Rathjen J, Hodgkin J, Preston GM.

ISME J. 2013 Jun;7(6):1126-38. doi: 10.1038/ismej.2013.9. Epub 2013 Feb 21.

39.

The tomato Prf complex is a molecular trap for bacterial effectors based on Pto transphosphorylation.

Ntoukakis V, Balmuth AL, Mucyn TS, Gutierrez JR, Jones AM, Rathjen JP.

PLoS Pathog. 2013 Jan;9(1):e1003123. doi: 10.1371/journal.ppat.1003123. Epub 2013 Jan 31.

40.

Aspartate oxidase plays an important role in Arabidopsis stomatal immunity.

Macho AP, Boutrot F, Rathjen JP, Zipfel C.

Plant Physiol. 2012 Aug;159(4):1845-56. doi: 10.1104/pp.112.199810. Epub 2012 Jun 22.

41.

A system to enrich for primitive streak-derivatives, definitive endoderm and mesoderm, from pluripotent cells in culture.

Vassilieva S, Goh HN, Lau KX, Hughes JN, Familari M, Rathjen PD, Rathjen J.

PLoS One. 2012;7(6):e38645. doi: 10.1371/journal.pone.0038645. Epub 2012 Jun 11.

42.

Brassinosteroids inhibit pathogen-associated molecular pattern-triggered immune signaling independent of the receptor kinase BAK1.

Albrecht C, Boutrot F, Segonzac C, Schwessinger B, Gimenez-Ibanez S, Chinchilla D, Rathjen JP, de Vries SC, Zipfel C.

Proc Natl Acad Sci U S A. 2012 Jan 3;109(1):303-8. doi: 10.1073/pnas.1109921108. Epub 2011 Nov 15.

43.

Hierarchy and roles of pathogen-associated molecular pattern-induced responses in Nicotiana benthamiana.

Segonzac C, Feike D, Gimenez-Ibanez S, Hann DR, Zipfel C, Rathjen JP.

Plant Physiol. 2011 Jun;156(2):687-99. doi: 10.1104/pp.110.171249. Epub 2011 Apr 8.

44.

Gibberellin biosynthesis and signalling during development of the strawberry receptacle.

Csukasi F, Osorio S, Gutierrez JR, Kitamura J, Giavalisco P, Nakajima M, Fernie AR, Rathjen JP, Botella MA, Valpuesta V, Medina-Escobar N.

New Phytol. 2011 Jul;191(2):376-90. doi: 10.1111/j.1469-8137.2011.03700.x. Epub 2011 Mar 28.

45.

The amino acid transporter SNAT2 mediates L-proline-induced differentiation of ES cells.

Tan BS, Lonic A, Morris MB, Rathjen PD, Rathjen J.

Am J Physiol Cell Physiol. 2011 Jun;300(6):C1270-9. doi: 10.1152/ajpcell.00235.2010. Epub 2011 Feb 23.

46.

The receptor-like kinase SERK3/BAK1 is required for basal resistance against the late blight pathogen phytophthora infestans in Nicotiana benthamiana.

Chaparro-Garcia A, Wilkinson RC, Gimenez-Ibanez S, Findlay K, Coffey MD, Zipfel C, Rathjen JP, Kamoun S, Schornack S.

PLoS One. 2011 Jan 27;6(1):e16608. doi: 10.1371/journal.pone.0016608.

47.

A requirement for FGF signalling in the formation of primitive streak-like intermediates from primitive ectoderm in culture.

Zheng Z, de Iongh RU, Rathjen PD, Rathjen J.

PLoS One. 2010 Sep 3;5(9):e12555. doi: 10.1371/journal.pone.0012555.

48.

Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1.

Boutrot F, Segonzac C, Chang KN, Qiao H, Ecker JR, Zipfel C, Rathjen JP.

Proc Natl Acad Sci U S A. 2010 Aug 10;107(32):14502-7. doi: 10.1073/pnas.1003347107. Epub 2010 Jul 27.

49.

Plant immunity: towards an integrated view of plant-pathogen interactions.

Dodds PN, Rathjen JP.

Nat Rev Genet. 2010 Aug;11(8):539-48. doi: 10.1038/nrg2812. Epub 2010 Jun 29. Review.

PMID:
20585331
50.

The long and winding road: virulence effector proteins of plant pathogenic bacteria.

Hann DR, Rathjen JP.

Cell Mol Life Sci. 2010 Oct;67(20):3425-34. doi: 10.1007/s00018-010-0428-1. Epub 2010 Jun 13. Review.

PMID:
20549537

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