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Items: 1 to 50 of 73

1.

AID/APOBEC-like cytidine deaminases are ancient innate immune mediators in invertebrates.

Liu MC, Liao WY, Buckley KM, Yang SY, Rast JP, Fugmann SD.

Nat Commun. 2018 May 16;9(1):1948. doi: 10.1038/s41467-018-04273-x.

2.

An Organismal Model for Gene Regulatory Networks in the Gut-Associated Immune Response.

Buckley KM, Rast JP.

Front Immunol. 2017 Oct 23;8:1297. doi: 10.3389/fimmu.2017.01297. eCollection 2017. Review.

3.

Bacterial artificial chromosomes as recombinant reporter constructs to investigate gene expression and regulation in echinoderms.

Buckley KM, Dong P, Cameron RA, Rast JP.

Brief Funct Genomics. 2018 Sep 27;17(5):362-371. doi: 10.1093/bfgp/elx031.

4.

Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, Bickham-Wright U, Biggar KK, Blouin M, Bonning BC, Botka C, Bridger JM, Buckley KM, Buddenborg SK, Lima Caldeira R, Carleton J, Carvalho OS, Castillo MG, Chalmers IW, Christensens M, Clifton S, Cosseau C, Coustau C, Cripps RM, Cuesta-Astroz Y, Cummins SF, Di Stefano L, Dinguirard N, Duval D, Emrich S, Feschotte C, Feyereisen R, FitzGerald P, Fronick C, Fulton L, Galinier R, Gava SG, Geusz M, Geyer KK, Giraldo-Calderón GI, de Souza Gomes M, Gordy MA, Gourbal B, Grunau C, Hanington PC, Hoffmann KF, Hughes D, Humphries J, Jackson DJ, Jannotti-Passos LK, de Jesus Jeremias W, Jobling S, Kamel B, Kapusta A, Kaur S, Koene JM, Kohn AB, Lawson D, Lawton SP, Liang D, Limpanont Y, Liu S, Lockyer AE, Lovato TAL, Ludolf F, Magrini V, McManus DP, Medina M, Misra M, Mitta G, Mkoji GM, Montague MJ, Montelongo C, Moroz LL, Munoz-Torres MC, Niazi U, Noble LR, Oliveira FS, Pais FS, Papenfuss AT, Peace R, Pena JJ, Pila EA, Quelais T, Raney BJ, Rast JP, Rollinson D, Rosse IC, Rotgans B, Routledge EJ, Ryan KM, Scholte LLS, Storey KB, Swain M, Tennessen JA, Tomlinson C, Trujillo DL, Volpi EV, Walker AJ, Wang T, Wannaporn I, Warren WC, Wu XJ, Yoshino TP, Yusuf M, Zhang SM, Zhao M, Wilson RK.

Nat Commun. 2017 Aug 23;8:16153. doi: 10.1038/ncomms16153.

5.

Perturbation of gut bacteria induces a coordinated cellular immune response in the purple sea urchin larva.

Ho EC, Buckley KM, Schrankel CS, Schuh NW, Hibino T, Solek CM, Bae K, Wang G, Rast JP.

Immunol Cell Biol. 2017 Aug;95(7):647. doi: 10.1038/icb.2017.40.

6.

Whole genome analysis of a schistosomiasis-transmitting freshwater snail.

Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, Bickham-Wright U, Biggar KK, Blouin M, Bonning BC, Botka C, Bridger JM, Buckley KM, Buddenborg SK, Lima Caldeira R, Carleton J, Carvalho OS, Castillo MG, Chalmers IW, Christensens M, Clifton S, Cosseau C, Coustau C, Cripps RM, Cuesta-Astroz Y, Cummins SF, di Stephano L, Dinguirard N, Duval D, Emrich S, Feschotte C, Feyereisen R, FitzGerald P, Fronick C, Fulton L, Galinier R, Gava SG, Geusz M, Geyer KK, Giraldo-Calderón GI, de Souza Gomes M, Gordy MA, Gourbal B, Grunau C, Hanington PC, Hoffmann KF, Hughes D, Humphries J, Jackson DJ, Jannotti-Passos LK, de Jesus Jeremias W, Jobling S, Kamel B, Kapusta A, Kaur S, Koene JM, Kohn AB, Lawson D, Lawton SP, Liang D, Limpanont Y, Liu S, Lockyer AE, Lovato TL, Ludolf F, Magrini V, McManus DP, Medina M, Misra M, Mitta G, Mkoji GM, Montague MJ, Montelongo C, Moroz LL, Munoz-Torres MC, Niazi U, Noble LR, Oliveira FS, Pais FS, Papenfuss AT, Peace R, Pena JJ, Pila EA, Quelais T, Raney BJ, Rast JP, Rollinson D, Rosse IC, Rotgans B, Routledge EJ, Ryan KM, Scholte LLS, Storey KB, Swain M, Tennessen JA, Tomlinson C, Trujillo DL, Volpi EV, Walker AJ, Wang T, Wannaporn I, Warren WC, Wu XJ, Yoshino TP, Yusuf M, Zhang SM, Zhao M, Wilson RK.

Nat Commun. 2017 May 16;8:15451. doi: 10.1038/ncomms15451. Erratum in: Nat Commun. 2017 Aug 23;8:16153.

7.

IL17 factors are early regulators in the gut epithelium during inflammatory response to Vibrio in the sea urchin larva.

Buckley KM, Ho ECH, Hibino T, Schrankel CS, Schuh NW, Wang G, Rast JP.

Elife. 2017 Apr 27;6. pii: e23481. doi: 10.7554/eLife.23481.

8.

Perturbation of gut bacteria induces a coordinated cellular immune response in the purple sea urchin larva.

Ch Ho E, Buckley KM, Schrankel CS, Schuh NW, Hibino T, Solek CM, Bae K, Wang G, Rast JP.

Immunol Cell Biol. 2016 Oct;94(9):861-874. doi: 10.1038/icb.2016.51. Epub 2016 May 19. Erratum in: Immunol Cell Biol. 2017 Aug;95(7):647.

9.

A conserved alternative form of the purple sea urchin HEB/E2-2/E2A transcription factor mediates a switch in E-protein regulatory state in differentiating immune cells.

Schrankel CS, Solek CM, Buckley KM, Anderson MK, Rast JP.

Dev Biol. 2016 Aug 1;416(1):149-161. doi: 10.1016/j.ydbio.2016.05.034. Epub 2016 Jun 2.

10.

Diversity of animal immune receptors and the origins of recognition complexity in the deuterostomes.

Buckley KM, Rast JP.

Dev Comp Immunol. 2015 Mar;49(1):179-89. doi: 10.1016/j.dci.2014.10.013. Epub 2014 Oct 30.

PMID:
25450907
11.

Obituary: Zeev Pancer 1957–2014.

Rast JP.

Dev Comp Immunol. 2014 Dec;47(2):327-8. No abstract available.

PMID:
25383416
12.

The ctenophore genome and the evolutionary origins of neural systems.

Moroz LL, Kocot KM, Citarella MR, Dosung S, Norekian TP, Povolotskaya IS, Grigorenko AP, Dailey C, Berezikov E, Buckley KM, Ptitsyn A, Reshetov D, Mukherjee K, Moroz TP, Bobkova Y, Yu F, Kapitonov VV, Jurka J, Bobkov YV, Swore JJ, Girardo DO, Fodor A, Gusev F, Sanford R, Bruders R, Kittler E, Mills CE, Rast JP, Derelle R, Solovyev VV, Kondrashov FA, Swalla BJ, Sweedler JV, Rogaev EI, Halanych KM, Kohn AB.

Nature. 2014 Jun 5;510(7503):109-14. doi: 10.1038/nature13400. Epub 2014 May 21.

13.

An ancient role for Gata-1/2/3 and Scl transcription factor homologs in the development of immunocytes.

Solek CM, Oliveri P, Loza-Coll M, Schrankel CS, Ho EC, Wang G, Rast JP.

Dev Biol. 2013 Oct 1;382(1):280-92. doi: 10.1016/j.ydbio.2013.06.019. Epub 2013 Jun 20.

14.

Lamprey immunity is far from primitive.

Rast JP, Buckley KM.

Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):5746-7. doi: 10.1073/pnas.1303541110. Epub 2013 Apr 3. No abstract available.

15.

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution.

Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, Cook M, Krumlauf R, Wiedemann LM, Sower SA, Decatur WA, Hall JA, Amemiya CT, Saha NR, Buckley KM, Rast JP, Das S, Hirano M, McCurley N, Guo P, Rohner N, Tabin CJ, Piccinelli P, Elgar G, Ruffier M, Aken BL, Searle SM, Muffato M, Pignatelli M, Herrero J, Jones M, Brown CT, Chung-Davidson YW, Nanlohy KG, Libants SV, Yeh CY, McCauley DW, Langeland JA, Pancer Z, Fritzsch B, de Jong PJ, Zhu B, Fulton LL, Theising B, Flicek P, Bronner ME, Warren WC, Clifton SW, Wilson RK, Li W.

Nat Genet. 2013 Apr;45(4):415-21, 421e1-2. doi: 10.1038/ng.2568. Epub 2013 Feb 24.

16.

Dynamic evolution of toll-like receptor multigene families in echinoderms.

Buckley KM, Rast JP.

Front Immunol. 2012 Jun 5;3:136. doi: 10.3389/fimmu.2012.00136. eCollection 2012.

17.

Characterizing immune receptors from new genome sequences.

Buckley KM, Rast JP.

Methods Mol Biol. 2011;748:273-98. doi: 10.1007/978-1-61779-139-0_19.

PMID:
21701981
18.

The origins of vertebrate adaptive immunity.

Litman GW, Rast JP, Fugmann SD.

Nat Rev Immunol. 2010 Aug;10(8):543-53. doi: 10.1038/nri2807. Review.

19.

SpTie1/2 is expressed in coelomocytes, axial organ and embryos of the sea urchin Strongylocentrotus purpuratus, and is an orthologue of vertebrate Tie1 and Tie2.

Stevens ME, Dhillon J, Miller CA, Messier-Solek C, Majeske AJ, Zuelke D, Rast JP, Smith LC.

Dev Comp Immunol. 2010 Aug;34(8):884-95. doi: 10.1016/j.dci.2010.03.010. Epub 2010 Apr 10.

PMID:
20363251
20.

Echinoderm immunity.

Smith LC, Ghosh J, Buckley KM, Clow LA, Dheilly NM, Haug T, Henson JH, Li C, Lun CM, Majeske AJ, Matranga V, Nair SV, Rast JP, Raftos DA, Roth M, Sacchi S, Schrankel CS, Stensvåg K.

Adv Exp Med Biol. 2010;708:260-301. Review.

PMID:
21528703
21.

Highly diversified innate receptor systems and new forms of animal immunity.

Messier-Solek C, Buckley KM, Rast JP.

Semin Immunol. 2010 Feb;22(1):39-47. doi: 10.1016/j.smim.2009.11.007. Epub 2009 Dec 22. Review.

PMID:
20022762
22.

Sp185/333: a novel family of genes and proteins involved in the purple sea urchin immune response.

Ghosh J, Buckley KM, Nair SV, Raftos DA, Miller C, Majeske AJ, Hibino T, Rast JP, Roth M, Smith LC.

Dev Comp Immunol. 2010 Mar;34(3):235-45. doi: 10.1016/j.dci.2009.10.008. Epub 2009 Nov 12. Review.

PMID:
19887082
23.

Universal rules of immunity.

Anderson MK, Rast JP.

Immunol Cell Biol. 2009 Oct;87(7):507-9. doi: 10.1038/icb.2009.54. Epub 2009 Aug 11. No abstract available.

PMID:
19668259
24.

Marine invertebrate genome sequences and our evolving understanding of animal immunity.

Rast JP, Messier-Solek C.

Biol Bull. 2008 Jun;214(3):274-83. Review.

PMID:
18574104
25.

Biological bulletin virtual symposium: genomics of large marine metazoans.

Cameron RA, Rast JP.

Biol Bull. 2008 Jun;214(3):203-4. No abstract available.

PMID:
18574098
26.

The amphioxus genome illuminates vertebrate origins and cephalochordate biology.

Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DE, Garcia-Fernàndez J, Gibson-Brown JJ, Gissi C, Godzik A, Hallböök F, Hirose D, Hosomichi K, Ikuta T, Inoko H, Kasahara M, Kasamatsu J, Kawashima T, Kimura A, Kobayashi M, Kozmik Z, Kubokawa K, Laudet V, Litman GW, McHardy AC, Meulemans D, Nonaka M, Olinski RP, Pancer Z, Pennacchio LA, Pestarino M, Rast JP, Rigoutsos I, Robinson-Rechavi M, Roch G, Saiga H, Sasakura Y, Satake M, Satou Y, Schubert M, Sherwood N, Shiina T, Takatori N, Tello J, Vopalensky P, Wada S, Xu A, Ye Y, Yoshida K, Yoshizaki F, Yu JK, Zhang Q, Zmasek CM, de Jong PJ, Osoegawa K, Putnam NH, Rokhsar DS, Satoh N, Holland PW.

Genome Res. 2008 Jul;18(7):1100-11. doi: 10.1101/gr.073676.107. Epub 2008 Jun 18. Erratum in: Genome Res. 2008 Aug;18(8):1380.

27.

Alternative mechanisms of immune receptor diversity.

Litman GW, Dishaw LJ, Cannon JP, Haire RN, Rast JP.

Curr Opin Immunol. 2007 Oct;19(5):526-34. Epub 2007 Aug 20. Review.

28.

Genomic insights into the immune system of the sea urchin.

Rast JP, Smith LC, Loza-Coll M, Hibino T, Litman GW.

Science. 2006 Nov 10;314(5801):952-6. Review.

29.

The genome of the sea urchin Strongylocentrotus purpuratus.

Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R.

Science. 2006 Nov 10;314(5801):941-52. Erratum in: Science. 2007 Feb 9;315(5813):766.

30.

The immune gene repertoire encoded in the purple sea urchin genome.

Hibino T, Loza-Coll M, Messier C, Majeske AJ, Cohen AH, Terwilliger DP, Buckley KM, Brockton V, Nair SV, Berney K, Fugmann SD, Anderson MK, Pancer Z, Cameron RA, Smith LC, Rast JP.

Dev Biol. 2006 Dec 1;300(1):349-65. Epub 2006 Sep 3.

31.

An ancient evolutionary origin of the Rag1/2 gene locus.

Fugmann SD, Messier C, Novack LA, Cameron RA, Rast JP.

Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3728-33. Epub 2006 Feb 27.

32.

Echinoderms.

Amemiya CT, Miyake T, Rast JP.

Curr Biol. 2005 Dec 6;15(23):R944-6. Review. No abstract available.

33.

Unusual gene order and organization of the sea urchin hox cluster.

Cameron RA, Rowen L, Nesbitt R, Bloom S, Rast JP, Berney K, Arenas-Mena C, Martinez P, Lucas S, Richardson PM, Davidson EH, Peterson KJ, Hood L.

J Exp Zool B Mol Dev Evol. 2006 Jan 15;306(1):45-58.

PMID:
16116652
34.

New insights into alternative mechanisms of immune receptor diversification.

Litman GW, Cannon JP, Rast JP.

Adv Immunol. 2005;87:209-36. Review.

PMID:
16102575
35.

Genomic resources for the study of sea urchin development.

Cameron RA, Rast JP, Brown CT.

Methods Cell Biol. 2004;74:733-57. Review. No abstract available.

PMID:
15575629
36.

Mechanisms of antigen receptor evolution.

Eason DD, Cannon JP, Haire RN, Rast JP, Ostrov DA, Litman GW.

Semin Immunol. 2004 Aug;16(4):215-26. Review.

PMID:
15522620
37.

The phylogenetic origins of the antigen-binding receptors and somatic diversification mechanisms.

Cannon JP, Haire RN, Rast JP, Litman GW.

Immunol Rev. 2004 Aug;200:12-22. Review.

PMID:
15242392
38.

Expression patterns of four different regulatory genes that function during sea urchin development.

Minokawa T, Rast JP, Arenas-Mena C, Franco CB, Davidson EH.

Gene Expr Patterns. 2004 Jul;4(4):449-56.

PMID:
15183312
39.

Isolation of pigment cell specific genes in the sea urchin embryo by differential macroarray screening.

Calestani C, Rast JP, Davidson EH.

Development. 2003 Oct;130(19):4587-96.

40.

Development gene networks and evolution.

Rast JP.

J Struct Funct Genomics. 2003;3(1-4):225-34. Review.

PMID:
12836701
41.

Lineage-restricted retention of a primitive immunoglobulin heavy chain isotype within the Dipnoi reveals an evolutionary paradox.

Ota T, Rast JP, Litman GW, Amemiya CT.

Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2501-6. Epub 2003 Feb 26.

42.

Identification of low-abundance differentially expressed transcripts using arrayed cDNA clones.

Golby P, Stephens SK, Rast JP, Burke JF.

Comp Biochem Physiol B Biochem Mol Biol. 2002 Dec;133(4):537-42.

PMID:
12470817
43.

brachyury Target genes in the early sea urchin embryo isolated by differential macroarray screening.

Rast JP, Cameron RA, Poustka AJ, Davidson EH.

Dev Biol. 2002 Jun 1;246(1):191-208.

44.

A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo.

Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Schilstra MJ, Clarke PJ, Rust AG, Pan Z, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H.

Dev Biol. 2002 Jun 1;246(1):162-90.

45.

New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization.

Ransick A, Rast JP, Minokawa T, Calestani C, Davidson EH.

Dev Biol. 2002 Jun 1;246(1):132-47.

46.

A genomic regulatory network for development.

Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, Rust AG, Pan Zj, Schilstra MJ, Clarke PJ, Arnone MI, Rowen L, Cameron RA, McClay DR, Hood L, Bolouri H.

Science. 2002 Mar 1;295(5560):1669-78. Review.

PMID:
11872831
47.

Recovery of developmentally defined gene sets from high-density cDNA macroarrays.

Rast JP, Amore G, Calestani C, Livi CB, Ransick A, Davidson EH.

Dev Biol. 2000 Dec 15;228(2):270-86.

48.

Characterization of three isotypes of immunoglobulin light chains and T-cell antigen receptor alpha in zebrafish.

Haire RN, Rast JP, Litman RT, Litman GW.

Immunogenetics. 2000 Sep;51(11):915-23.

PMID:
11003385
49.

A sea urchin genome project: sequence scan, virtual map, and additional resources.

Cameron RA, Mahairas G, Rast JP, Martinez P, Biondi TR, Swartzell S, Wallace JC, Poustka AJ, Livingston BT, Wray GA, Ettensohn CA, Lehrach H, Britten RJ, Davidson EH, Hood L.

Proc Natl Acad Sci U S A. 2000 Aug 15;97(17):9514-8.

50.

Members of the Ikaros gene family are present in early representative vertebrates.

Haire RN, Miracle AL, Rast JP, Litman GW.

J Immunol. 2000 Jul 1;165(1):306-12.

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