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Items: 28

1.

Entry of bunyaviruses into plants and vectors.

Chen Y, Dessau M, Rotenberg D, Rasmussen DA, Whitfield AE.

Adv Virus Res. 2019;104:65-96. doi: 10.1016/bs.aivir.2019.07.001. Epub 2019 Aug 9.

PMID:
31439153
2.

Coupling adaptive molecular evolution to phylodynamics using fitness-dependent birth-death models.

Rasmussen DA, Stadler T.

Elife. 2019 Aug 15;8. pii: e45562. doi: 10.7554/eLife.45562.

3.

Estimating Epidemic Incidence and Prevalence from Genomic Data.

Vaughan TG, Leventhal GE, Rasmussen DA, Drummond AJ, Welch D, Stadler T.

Mol Biol Evol. 2019 Aug 1;36(8):1804-1816. doi: 10.1093/molbev/msz106.

4.

Tracking external introductions of HIV using phylodynamics reveals a major source of infections in rural KwaZulu-Natal, South Africa.

Rasmussen DA, Wilkinson E, Vandormael A, Tanser F, Pillay D, Stadler T, de Oliveira T.

Virus Evol. 2018 Dec 11;4(2):vey037. doi: 10.1093/ve/vey037. eCollection 2018 Jul.

5.

A51 Dengue virus multi-strain models as hypotheses for serotype interaction.

Souto-Maior C, Rasmussen DA, De Freitas M, Gomes MGM.

Virus Evol. 2017 Mar 5;3(Suppl 1). pii: vew036.050. doi: 10.1093/ve/vew036.050. eCollection 2017 Mar. No abstract available.

6.

Taming the BEAST-A Community Teaching Material Resource for BEAST 2.

Barido-Sottani J, Bošková V, Plessis LD, Kühnert D, Magnus C, Mitov V, Müller NF, PecErska J, Rasmussen DA, Zhang C, Drummond AJ, Heath TA, Pybus OG, Vaughan TG, Stadler T.

Syst Biol. 2018 Jan 1;67(1):170-174. doi: 10.1093/sysbio/syx060.

7.

The Structured Coalescent and Its Approximations.

Müller NF, Rasmussen DA, Stadler T.

Mol Biol Evol. 2017 Nov 1;34(11):2970-2981. doi: 10.1093/molbev/msx186.

8.

Phylodynamics on local sexual contact networks.

Rasmussen DA, Kouyos R, Günthard HF, Stadler T.

PLoS Comput Biol. 2017 Mar 28;13(3):e1005448. doi: 10.1371/journal.pcbi.1005448. eCollection 2017 Mar.

9.

Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain AS, Joy JB, Kendall M, Kühnert D, Leventhal GE, Liang R, Plazzotta G, Poon AF, Rasmussen DA, Stadler T, Volz E, Weis C, Leigh Brown AJ, Fraser C; PANGEA-HIV Consortium.

Mol Biol Evol. 2017 Jan;34(1):185-203. doi: 10.1093/molbev/msw217. Epub 2016 Oct 7.

10.

The effects of a deleterious mutation load on patterns of influenza A/H3N2's antigenic evolution in humans.

Koelle K, Rasmussen DA.

Elife. 2015 Sep 15;4:e07361. doi: 10.7554/eLife.07361.

11.

Insights into the early epidemic spread of ebola in sierra leone provided by viral sequence data.

Stadler T, Kühnert D, Rasmussen DA, du Plessis L.

PLoS Curr. 2014 Oct 6;6. pii: ecurrents.outbreaks.02bc6d927ecee7bbd33532ec8ba6a25f. doi: 10.1371/currents.outbreaks.02bc6d927ecee7bbd33532ec8ba6a25f.

12.

Fast imaging of intact and shattered cryogenic neon pellets.

Wang Z, Combs SK, Baylor LR, Foust CR, Lyttle MS, Meitner SJ, Rasmussen DA.

Rev Sci Instrum. 2014 Nov;85(11):11E805. doi: 10.1063/1.4886426.

PMID:
25430370
13.

Phylodynamic inference for structured epidemiological models.

Rasmussen DA, Volz EM, Koelle K.

PLoS Comput Biol. 2014 Apr 17;10(4):e1003570. doi: 10.1371/journal.pcbi.1003570. eCollection 2014 Apr.

14.

Influenza: Prediction is worth a shot.

Koelle K, Rasmussen DA.

Nature. 2014 Mar 6;507(7490):47-8. doi: 10.1038/nature13054. Epub 2014 Feb 26. No abstract available.

PMID:
24572355
15.

Reconciling phylodynamics with epidemiology: the case of dengue virus in southern Vietnam.

Rasmussen DA, Boni MF, Koelle K.

Mol Biol Evol. 2014 Feb;31(2):258-71. doi: 10.1093/molbev/mst203. Epub 2013 Oct 22.

16.

Rates of coalescence for common epidemiological models at equilibrium.

Koelle K, Rasmussen DA.

J R Soc Interface. 2012 May 7;9(70):997-1007. doi: 10.1098/rsif.2011.0495. Epub 2011 Sep 15.

17.

Inference for nonlinear epidemiological models using genealogies and time series.

Rasmussen DA, Ratmann O, Koelle K.

PLoS Comput Biol. 2011 Aug;7(8):e1002136. doi: 10.1371/journal.pcbi.1002136. Epub 2011 Aug 25.

18.

Sunflower domestication alleles support single domestication center in eastern North America.

Blackman BK, Scascitelli M, Kane NC, Luton HH, Rasmussen DA, Bye RA, Lentz DL, Rieseberg LH.

Proc Natl Acad Sci U S A. 2011 Aug 23;108(34):14360-5. doi: 10.1073/pnas.1104853108. Epub 2011 Aug 15.

19.

A dimensionless number for understanding the evolutionary dynamics of antigenically variable RNA viruses.

Koelle K, Ratmann O, Rasmussen DA, Pasour V, Mattingly J.

Proc Biol Sci. 2011 Dec 22;278(1725):3723-30. doi: 10.1098/rspb.2011.0435. Epub 2011 May 4.

20.

High speed digital holography for density and fluctuation measurements (invited).

Thomas CE Jr, Baylor LR, Combs SK, Meitner SJ, Rasmussen DA, Granstedt EM, Majeski RP, Kaita R.

Rev Sci Instrum. 2010 Oct;81(10):10E527. doi: 10.1063/1.3492423.

PMID:
21034055
21.

Contributions of flowering time genes to sunflower domestication and improvement.

Blackman BK, Rasmussen DA, Strasburg JL, Raduski AR, Burke JM, Knapp SJ, Michaels SD, Rieseberg LH.

Genetics. 2011 Jan;187(1):271-87. doi: 10.1534/genetics.110.121327. Epub 2010 Oct 13.

22.
23.

One size fits all? Molecular evidence for a commonly inherited petal identity program in Ranunculales.

Rasmussen DA, Kramer EM, Zimmer EA.

Am J Bot. 2009 Jan;96(1):96-109. doi: 10.3732/ajb.0800038. Epub 2008 Dec 19.

24.

Low-Power Testing of Losses in Millimeter-Wave Transmission Lines for High-Power Applications.

Han ST, Comfoltey EN, Shapiro MA, Sirigiri JR, Tax DS, Temkin RJ, Woskov PP, Rasmussen DA.

Int J Infrared Millimeter Waves. 2008 Nov;29(11):1011-1018.

25.

A compact flexible pellet injector for the TJ-II stellarator.

McCarthy KJ, Combs SK, Baylor LR, Caughman JB, Fehling DT, Foust CR, McGill JM, Carmona JM, Rasmussen DA.

Rev Sci Instrum. 2008 Oct;79(10):10F321. doi: 10.1063/1.2955706.

PMID:
19044634
26.

Longitudinal field comparison of the RT3 and an activity diary with cardiac patients.

Hertzog MA, Nieveen JL, Zimmerman LM, Barnason SA, Schulz PM, Miller CL, Rasmussen DA.

J Nurs Meas. 2007;15(2):105-20.

PMID:
18020168
27.

Bootstrap-current experiments in a toroidal plasma-confinement device.

Murakami M, Carreras BA, Baylor LR, Bell GL, Bigelow TS, England AC, Glowienka JC, Howe HC, Jernigan TC, Lee DK, Lynch VE, Ma CH, Rasmussen DA, Tolliver JS, Wade MR, Wilgen JB, Wing WR.

Phys Rev Lett. 1991 Feb 11;66(6):707-710. No abstract available.

PMID:
10043880
28.

Second stability in the ATF torsatron.

Harris JH, Murakami M, Carreras BA, Bell JD, Bell GL, Bigelow TS, Charlton LA, Dominguez N, Dunlap JL, Glowienka JC, Horton LD, Howe HC, Isler RC, Kaneko H, Kindsfather RR, Leboeuf JN, Lynch VE, Menon MM, Morris RN, Neilson GH, Paré VK, Rasmussen DA, Wilgen JB, Wing WR.

Phys Rev Lett. 1989 Sep 18;63(12):1249-1252. No abstract available.

PMID:
10040514

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