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Filtering procedures for untargeted LC-MS metabolomics data.

Schiffman C, Petrick L, Perttula K, Yano Y, Carlsson H, Whitehead T, Metayer C, Hayes J, Rappaport S, Dudoit S.

BMC Bioinformatics. 2019 Jun 14;20(1):334. doi: 10.1186/s12859-019-2871-9.


Challenges in IBD Research: Environmental Triggers.

Ho SM, Lewis JD, Mayer EA, Plevy SE, Chuang E, Rappaport SM, Croitoru K, Korzenik JR, Krischer J, Hyams JS, Judson R, Kellis M, Jerrett M, Miller GW, Grant ML, Shtraizent N, Honig G, Hurtado-Lorenzo A, Wu GD.

Inflamm Bowel Dis. 2019 May 16;25(Supplement_2):S13-S23. doi: 10.1093/ibd/izz076.


A Retrospective Study of Early vs Delayed Home Dose Basal Insulin in the Acute Management of Diabetic Ketoacidosis.

Rappaport SH, Endicott JA, Gilbert MP, Farkas JD, Clouser RD, McMillian WD.

J Endocr Soc. 2019 Apr 11;3(5):1079-1086. doi: 10.1210/js.2018-00400. eCollection 2019 May 1.


Metabolomics of neonatal blood spots reveal distinct phenotypes of pediatric acute lymphoblastic leukemia and potential effects of early-life nutrition.

Petrick LM, Schiffman C, Edmands WMB, Yano Y, Perttula K, Whitehead T, Metayer C, Wheelock CE, Arora M, Grigoryan H, Carlsson H, Dudoit S, Rappaport SM.

Cancer Lett. 2019 Jun 28;452:71-78. doi: 10.1016/j.canlet.2019.03.007. Epub 2019 Mar 20.


Protein Adductomics: Methodologies for Untargeted Screening of Adducts to Serum Albumin and Hemoglobin in Human Blood Samples.

Carlsson H, Rappaport SM, Törnqvist M.

High Throughput. 2019 Mar 8;8(1). pii: E6. doi: 10.3390/ht8010006. Review.


Untargeted adductomics of Cys34 modifications to human serum albumin in newborn dried blood spots.

Yano Y, Grigoryan H, Schiffman C, Edmands W, Petrick L, Hall K, Whitehead T, Metayer C, Dudoit S, Rappaport S.

Anal Bioanal Chem. 2019 Apr;411(11):2351-2362. doi: 10.1007/s00216-019-01675-8. Epub 2019 Feb 19.


Untargeted lipidomic features associated with colorectal cancer in a prospective cohort.

Perttula K, Schiffman C, Edmands WMB, Petrick L, Grigoryan H, Cai X, Gunter MJ, Naccarati A, Polidoro S, Dudoit S, Vineis P, Rappaport SM.

BMC Cancer. 2018 Oct 19;18(1):996. doi: 10.1186/s12885-018-4894-4.


Identification of gene expression predictors of occupational benzene exposure.

Schiffman C, McHale CM, Hubbard AE, Zhang L, Thomas R, Vermeulen R, Li G, Shen M, Rappaport SM, Yin S, Lan Q, Smith MT, Rothman N.

PLoS One. 2018 Oct 9;13(10):e0205427. doi: 10.1371/journal.pone.0205427. eCollection 2018.


Redefining environmental exposure for disease etiology.

Rappaport SM.

NPJ Syst Biol Appl. 2018 Sep 1;4:30. doi: 10.1038/s41540-018-0065-0. eCollection 2018.


SimExTargId: a comprehensive package for real-time LC-MS data acquisition and analysis.

Edmands WMB, Hayes J, Rappaport SM.

Bioinformatics. 2018 Oct 15;34(20):3589-3590. doi: 10.1093/bioinformatics/bty218.


Likely Transiting Exocomets Detected By Kepler.

Rappaport S, Vanderburg A, Jacobs T, LaCourse D, Jenkins J, Kraus A, Rizzuto A, Latham DW, Bieryla A, Lazarevic M, Schmitt A.

Mon Not R Astron Soc. 2018 Feb 21;474(2):1453-1468. doi: 10.1093/mnras/stx2735. Epub 2017 Oct 31.


An untargeted metabolomics method for archived newborn dried blood spots in epidemiologic studies.

Petrick L, Edmands W, Schiffman C, Grigoryan H, Perttula K, Yano Y, Dudoit S, Whitehead T, Metayer C, Rappaport S.

Metabolomics. 2017 Mar;13(3). pii: 27. doi: 10.1007/s11306-016-1153-z. Epub 2017 Feb 3.


Adductomic signatures of benzene exposure provide insights into cancer induction.

Grigoryan H, Edmands WMB, Lan Q, Carlsson H, Vermeulen R, Zhang L, Yin SN, Li GL, Smith MT, Rothman N, Rappaport SM.

Carcinogenesis. 2018 May 3;39(5):661-668. doi: 10.1093/carcin/bgy042.


Cys34 Adductomes Differ between Patients with Chronic Lung or Heart Disease and Healthy Controls in Central London.

Liu S, Grigoryan H, Edmands WMB, Dagnino S, Sinharay R, Cullinan P, Collins P, Chung KF, Barratt B, Kelly FJ, Vineis P, Rappaport SM.

Environ Sci Technol. 2018 Feb 20;52(4):2307-2313. doi: 10.1021/acs.est.7b05554. Epub 2018 Feb 2.


Monte Carlo methods for nonparametric regression with heteroscedastic measurement error.

McIntyre J, Johnson BA, Rappaport SM.

Biometrics. 2018 Jun;74(2):498-505. doi: 10.1111/biom.12765. Epub 2017 Sep 15.


The Saliva Exposome for Monitoring of Individuals' Health Trajectories.

Bessonneau V, Pawliszyn J, Rappaport SM.

Environ Health Perspect. 2017 Jul 20;125(7):077014. doi: 10.1289/EHP1011.


Re: Chance, choice and cause in cancer aetiology: individual and population perspectives.

Rappaport SM.

Int J Epidemiol. 2017 Jun 1;46(3):1075-1076. doi: 10.1093/ije/dyx035. No abstract available.


Genetic Risk, Lifestyle, and Coronary Artery Disease.

Rappaport SM, Neophytou AM.

N Engl J Med. 2017 Mar 23;376(12):1193-4. doi: 10.1056/NEJMc1700362. No abstract available.


compMS2Miner: An Automatable Metabolite Identification, Visualization, and Data-Sharing R Package for High-Resolution LC-MS Data Sets.

Edmands WM, Petrick L, Barupal DK, Scalbert A, Wilson MJ, Wickliffe JK, Rappaport SM.

Anal Chem. 2017 Apr 4;89(7):3919-3928. doi: 10.1021/acs.analchem.6b02394. Epub 2017 Mar 27.


Using lysine adducts of human serum albumin to investigate the disposition of exogenous formaldehyde in human blood.

Regazzoni LG, Grigoryan H, Ji Z, Chen X, Daniels SI, Huang D, Sanchez S, Tang N, Sillé FC, Iavarone AT, Williams ER, Zhang L, Rappaport SM.

Toxicol Lett. 2017 Feb 15;268:26-35. doi: 10.1016/j.toxlet.2017.01.002. Epub 2017 Jan 16.


Profiling the Serum Albumin Cys34 Adductome of Solid Fuel Users in Xuanwei and Fuyuan, China.

Lu SS, Grigoryan H, Edmands WM, Hu W, Iavarone AT, Hubbard A, Rothman N, Vermeulen R, Lan Q, Rappaport SM.

Environ Sci Technol. 2017 Jan 3;51(1):46-57. doi: 10.1021/acs.est.6b03955. Epub 2016 Dec 12.


Adductomics Pipeline for Untargeted Analysis of Modifications to Cys34 of Human Serum Albumin.

Grigoryan H, Edmands W, Lu SS, Yano Y, Regazzoni L, Iavarone AT, Williams ER, Rappaport SM.

Anal Chem. 2016 Nov 1;88(21):10504-10512. Epub 2016 Oct 10.


Biomonitoring in the Era of the Exposome.

Dennis KK, Marder E, Balshaw DM, Cui Y, Lynes MA, Patti GJ, Rappaport SM, Shaughnessy DT, Vrijheid M, Barr DB.

Environ Health Perspect. 2017 Apr;125(4):502-510. doi: 10.1289/EHP474. Epub 2016 Jul 6.


Evaluating Ultra-long-Chain Fatty Acids as Biomarkers of Colorectal Cancer Risk.

Perttula K, Edmands WM, Grigoryan H, Cai X, Iavarone AT, Gunter MJ, Naccarati A, Polidoro S, Hubbard A, Vineis P, Rappaport SM.

Cancer Epidemiol Biomarkers Prev. 2016 Aug;25(8):1216-23. doi: 10.1158/1055-9965.EPI-16-0204. Epub 2016 Jun 2.


Comparison of hematological alterations and markers of B-cell activation in workers exposed to benzene, formaldehyde and trichloroethylene.

Bassig BA, Zhang L, Vermeulen R, Tang X, Li G, Hu W, Guo W, Purdue MP, Yin S, Rappaport SM, Shen M, Ji Z, Qiu C, Ge Y, Hosgood HD, Reiss B, Wu B, Xie Y, Li L, Yue F, Freeman LE, Blair A, Hayes RB, Huang H, Smith MT, Rothman N, Lan Q.

Carcinogenesis. 2016 Jul;37(7):692-700. doi: 10.1093/carcin/bgw053. Epub 2016 May 2.


Genetic Factors Are Not the Major Causes of Chronic Diseases.

Rappaport SM.

PLoS One. 2016 Apr 22;11(4):e0154387. doi: 10.1371/journal.pone.0154387. eCollection 2016.


Unconscious Familiarity-based Color-Form Binding: Evidence from Visual Extinction.

Rappaport SJ, Riddoch MJ, Chechlacz M, Humphreys GW.

J Cogn Neurosci. 2016 Mar;28(3):501-16. doi: 10.1162/jocn_a_00904. Epub 2015 Dec 17.


A disintegrating minor planet transiting a white dwarf.

Vanderburg A, Johnson JA, Rappaport S, Bieryla A, Irwin J, Lewis JA, Kipping D, Brown WR, Dufour P, Ciardi DR, Angus R, Schaefer L, Latham DW, Charbonneau D, Beichman C, Eastman J, McCrady N, Wittenmyer RA, Wright JT.

Nature. 2015 Oct 22;526(7574):546-9. doi: 10.1038/nature15527.


Long-term Safety and Efficacy of Tapentadol Extended Release Following up to 2 Years of Treatment in Patients With Moderate to Severe, Chronic Pain: Results of an Open-label Extension Trial.

Buynak R, Rappaport SA, Rod K, Arsenault P, Heisig F, Rauschkolb C, Etropolski M.

Clin Ther. 2015 Nov 1;37(11):2420-38. doi: 10.1016/j.clinthera.2015.08.014. Epub 2015 Oct 1.


The biological embedding of social differences in ageing trajectories.

Vineis P, Kelly-Irving M, Rappaport S, Stringhini S.

J Epidemiol Community Health. 2016 Feb;70(2):111-3. doi: 10.1136/jech-2015-206089. Epub 2015 Aug 7. No abstract available.


Effect of wrist and interphalangeal thumb movement on zone T2 flexor pollicis longus tendon tension in a human cadaver model.

Rappaport PO, Thoreson AR, Yang TH, Reisdorf RL, Rappaport SM, An KN, Amadio PC.

J Hand Ther. 2015 Oct-Dec;28(4):347-54; quiz 355. doi: 10.1016/j.jht.2015.04.002. Epub 2015 Apr 14.


Concentrations of Persistent Organic Pollutants in California Children's Whole Blood and Residential Dust.

Whitehead TP, Crispo Smith S, Park JS, Petreas MX, Rappaport SM, Metayer C.

Environ Sci Technol. 2015 Aug 4;49(15):9331-40. doi: 10.1021/acs.est.5b02078. Epub 2015 Jul 22.


Conductance hysteresis in the voltage-dependent anion channel.

Rappaport SM, Teijido O, Hoogerheide DP, Rostovtseva TK, Berezhkovskii AM, Bezrukov SM.

Eur Biophys J. 2015 Sep;44(6):465-472. doi: 10.1007/s00249-015-1049-2. Epub 2015 Jun 21.


National standards for asthma self-management education.

Gardner A, Kaplan B, Brown W, Krier-Morrow D, Rappaport S, Marcus L, Conboy-Ellis K, Mullen A, Rance K, Aaronson D; Joint Council of Allergy, Asthma, and Immunology; American College of Allergy, Asthma, and Immunology; American Academy of Allergy, Asthma, and Immunology; American Lung Association; American Thoracic Society; National Asthma Educator Certification Board; American College of Chest Physicians; Association of Asthma Educators.

Ann Allergy Asthma Immunol. 2015 Mar;114(3):178-186.e1. doi: 10.1016/j.anai.2014.12.014.


Dust metal loadings and the risk of childhood acute lymphoblastic leukemia.

Whitehead TP, Ward MH, Colt JS, Dahl G, Ducore J, Reinier K, Gunier RB, Katharine Hammond S, Rappaport SM, Metayer C.

J Expo Sci Environ Epidemiol. 2015 Nov-Dec;25(6):593-8. doi: 10.1038/jes.2015.9. Epub 2015 Mar 4.


Concentrations of persistent organic pollutants in California women's serum and residential dust.

Whitehead TP, Crispo Smith S, Park JS, Petreas MX, Rappaport SM, Metayer C.

Environ Res. 2015 Jan;136:57-66. doi: 10.1016/j.envres.2014.10.009. Epub 2014 Nov 20.


Chromosome-wide aneuploidy study of cultured circulating myeloid progenitor cells from workers occupationally exposed to formaldehyde.

Lan Q, Smith MT, Tang X, Guo W, Vermeulen R, Ji Z, Hu W, Hubbard AE, Shen M, McHale CM, Qiu C, Liu S, Reiss B, Beane-Freeman L, Blair A, Ge Y, Xiong J, Li L, Rappaport SM, Huang H, Rothman N, Zhang L.

Carcinogenesis. 2015 Jan;36(1):160-7. doi: 10.1093/carcin/bgu229. Epub 2014 Nov 12.


T3DB: the toxic exposome database.

Wishart D, Arndt D, Pon A, Sajed T, Guo AC, Djoumbou Y, Knox C, Wilson M, Liang Y, Grant J, Liu Y, Goldansaz SA, Rappaport SM.

Nucleic Acids Res. 2015 Jan;43(Database issue):D928-34. doi: 10.1093/nar/gku1004. Epub 2014 Nov 5.


Comprehensive assessment of exposure to identify health consequences of e-waste.

Qu W, Zheng Y, Andersen ME, Zheng W, Rappaport SM.

Lancet Glob Health. 2014 Feb;2(2):e73. doi: 10.1016/S2214-109X(13)70114-1. Epub 2014 Jan 23. No abstract available.


Acidification asymmetrically affects voltage-dependent anion channel implicating the involvement of salt bridges.

Teijido O, Rappaport SM, Chamberlin A, Noskov SY, Aguilella VM, Rostovtseva TK, Bezrukov SM.

J Biol Chem. 2014 Aug 22;289(34):23670-82. doi: 10.1074/jbc.M114.576314. Epub 2014 Jun 24.


Alterations in leukocyte telomere length in workers occupationally exposed to benzene.

Bassig BA, Zhang L, Cawthon RM, Smith MT, Yin S, Li G, Hu W, Shen M, Rappaport S, Barone-Adesi F, Rothman N, Vermeulen R, Lan Q.

Environ Mol Mutagen. 2014 Oct;55(8):673-8. doi: 10.1002/em.21880. Epub 2014 Jun 19.


Residential levels of polybrominated diphenyl ethers and risk of childhood acute lymphoblastic leukemia in California.

Ward MH, Colt JS, Deziel NC, Whitehead TP, Reynolds P, Gunier RB, Nishioka M, Dahl GV, Rappaport SM, Buffler PA, Metayer C.

Environ Health Perspect. 2014 Oct;122(10):1110-6. doi: 10.1289/ehp.1307602. Epub 2014 Jun 3.


Persistent organic pollutants in dust from older homes: learning from lead.

Whitehead TP, Metayer C, Ward MH, Colt JS, Gunier RB, Deziel NC, Rappaport SM, Buffler PA.

Am J Public Health. 2014 Jul;104(7):1320-6. doi: 10.2105/AJPH.2013.301835. Epub 2014 May 15.


Characterization of changes in gene expression and biochemical pathways at low levels of benzene exposure.

Thomas R, Hubbard AE, McHale CM, Zhang L, Rappaport SM, Lan Q, Rothman N, Vermeulen R, Guyton KZ, Jinot J, Sonawane BR, Smith MT.

PLoS One. 2014 May 1;9(5):e91828. doi: 10.1371/journal.pone.0091828. eCollection 2014.


The food metabolome: a window over dietary exposure.

Scalbert A, Brennan L, Manach C, Andres-Lacueva C, Dragsted LO, Draper J, Rappaport SM, van der Hooft JJ, Wishart DS.

Am J Clin Nutr. 2014 Jun;99(6):1286-308. doi: 10.3945/ajcn.113.076133. Epub 2014 Apr 23. Review.


Are urinary PAHs biomarkers of controlled exposure to diesel exhaust?

Lu SS, Sobus JR, Sallsten G, Albin M, Pleil JD, Gudmundsson A, Madden MC, Strandberg B, Wierzbicka A, Rappaport SM.

Biomarkers. 2014 Jun;19(4):332-9. doi: 10.3109/1354750X.2014.910553. Epub 2014 Apr 22.


The blood exposome and its role in discovering causes of disease.

Rappaport SM, Barupal DK, Wishart D, Vineis P, Scalbert A.

Environ Health Perspect. 2014 Aug;122(8):769-74. doi: 10.1289/ehp.1308015. Epub 2014 Mar 21.


Contact lens correction for an aphakic patient with megalocornea.

Saffra N, Rakhamimov A, Masini R, Rappaport S.

Cont Lens Anterior Eye. 2014 Aug;37(4):317-9. doi: 10.1016/j.clae.2014.02.006. Epub 2014 Mar 20.


Antibody enrichment and mass spectrometry of albumin-Cys34 adducts.

Chung MK, Grigoryan H, Iavarone AT, Rappaport SM.

Chem Res Toxicol. 2014 Mar 17;27(3):400-7. doi: 10.1021/tx400337k. Epub 2013 Dec 24.


Polychlorinated biphenyls in residential dust: sources of variability.

Whitehead TP, Brown FR, Metayer C, Park JS, Does M, Dhaliwal J, Petreas MX, Buffler PA, Rappaport SM.

Environ Sci Technol. 2014;48(1):157-64. doi: 10.1021/es403863m. Epub 2013 Dec 16.

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