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Items: 1 to 50 of 543

1.

Expertise in Head and Neck Cutaneous Reconstructive Surgery.

Deng M, Higgins HW 2nd, Lesiak K, Decker AB, Regula CG, Stevenson ML, Raphael B, Depry J, Scott JF, Bangash H, Ochoa SA, Ibrahimi OA, Shafai A, Bordeaux JS, Carucci JA, Cook JL, Goldman GD, Rohrer TE, Lawrence N.

Dermatol Surg. 2019 Feb 28. doi: 10.1097/DSS.0000000000001844. [Epub ahead of print]

PMID:
30829776
2.

Culture of Clinical Specimens Reveals Extensive Diversity of Legionella pneumophila Strains in Arizona.

Raphael BH, Huynh T, Brown E, Smith JC, Ruberto I, Getsinger L, White S, Winchell JM.

mSphere. 2019 Feb 27;4(1). pii: e00649-18. doi: 10.1128/mSphere.00649-18.

3.

Brentuximab vedotin as frontline treatment for HIV-related extracavitary primary effusion lymphoma.

Sandoval-Sus JD, Brahim A, Khan A, Raphael B, Ansari-Lari A, Ruiz M.

Int J Hematol. 2019 Jan 23. doi: 10.1007/s12185-019-02592-3. [Epub ahead of print]

PMID:
30671911
4.

The Clonal Evolution of Metastatic Osteosarcoma as Shaped by Cisplatin Treatment.

Brady SW, Ma X, Bahrami A, Satas G, Wu G, Newman S, Rusch M, Putnam DK, Mulder HL, Yergeau DA, Edmonson MN, Easton J, Alexandrov LB, Chen X, Mardis ER, Wilson RK, Downing JR, Pappo AS, Raphael BJ, Dyer MA, Zhang J.

Mol Cancer Res. 2019 Jan 16. doi: 10.1158/1541-7786.MCR-18-0620. [Epub ahead of print]

PMID:
30651371
5.

Hierarchical HotNet: identifying hierarchies of altered subnetworks.

Reyna MA, Leiserson MDM, Raphael BJ.

Bioinformatics. 2018 Sep 1;34(17):i972-i980. doi: 10.1093/bioinformatics/bty613.

6.

Genomic heterogeneity differentiates clinical and environmental subgroups of Legionella pneumophila sequence type 1.

Mercante JW, Caravas JA, Ishaq MK, Kozak-Muiznieks NA, Raphael BH, Winchell JM.

PLoS One. 2018 Oct 18;13(10):e0206110. doi: 10.1371/journal.pone.0206110. eCollection 2018.

7.

An Intravenous Fish Oil-Based Lipid Emulsion Successfully Treats Intractable Pruritus and Cholestasis in a Patient with Microvillous Inclusion Disease.

Anez-Bustillos L, Dao DT, Potemkin AK, Perez-Atayde AR, Raphael BP, Carey AN, Kamin DS, Thiagarajah JR, Crowley M, Gura KM, Puder M.

Hepatology. 2019 Mar;69(3):1353-1356. doi: 10.1002/hep.30311. Epub 2019 Feb 9. No abstract available.

PMID:
30311684
8.

Using controls to limit false discovery in the era of big data.

Parks MM, Raphael BJ, Lawrence CE.

BMC Bioinformatics. 2018 Sep 14;19(1):323. doi: 10.1186/s12859-018-2356-2.

9.

Haplotype phasing in single-cell DNA-sequencing data.

Satas G, Raphael BJ.

Bioinformatics. 2018 Jul 1;34(13):i211-i217. doi: 10.1093/bioinformatics/bty286.

10.

Analysis of Healthcare Institutional Costs of Pediatric Home Parenteral Nutrition Central Line Infections.

Raphael BP, Hazekamp C, Samnaliev M, Ozonoff A.

J Pediatr Gastroenterol Nutr. 2018 Oct;67(4):e77-e81. doi: 10.1097/MPG.0000000000002058.

PMID:
29912033
11.

Visible Machine Learning for Biomedicine.

Yu MK, Ma J, Fisher J, Kreisberg JF, Raphael BJ, Ideker T.

Cell. 2018 Jun 14;173(7):1562-1565. doi: 10.1016/j.cell.2018.05.056.

PMID:
29906441
12.

LONG-TERM SURVEILLANCE OF LANGUR ALPHAHERPESVIRUS IN A ZOO POPULATION OF SILVERED LANGURS ( TRACHYPITHECUS CRISTATUS).

Gustavsen KA, Raphael BL, Wildes MJ, McAloose D, McCann CM, Hilliard JK, Calle PP.

J Zoo Wildl Med. 2018 Jun;49(2):345-354. doi: 10.1638/2017-0241.1.

PMID:
29900798
13.

Essential Fatty Acid Status in Surgical Infants Receiving Parenteral Nutrition With a Composite Lipid Emulsion: A Case Series.

Carey AN, Rudie C, Mitchell PD, Raphael BP, Gura KM, Puder M.

JPEN J Parenter Enteral Nutr. 2019 Feb;43(2):305-310. doi: 10.1002/jpen.1311. Epub 2018 May 30.

PMID:
29846008
14.

A Rare Case of Composite Dural Extranodal Marginal Zone Lymphoma and Chronic Lymphocytic Leukemia/Small Lymphocytic Lymphoma.

Bustoros M, Liechty B, Zagzag D, Liu C, Shepherd T, Gruber D, Raphael B, Placantonakis DG.

Front Neurol. 2018 Apr 24;9:267. doi: 10.3389/fneur.2018.00267. eCollection 2018. Review.

15.

Virtual Telemedicine Visits in Pediatric Home Parenteral Nutrition Patients: A Quality Improvement Initiative.

Raphael BP, Schumann C, Garrity-Gentille S, McClelland J, Rosa C, Tascione C, Gallotto M, Takvorian-Bené M, Carey AN, McCarthy P, Duggan C, Ozonoff A.

Telemed J E Health. 2019 Jan;25(1):60-65. doi: 10.1089/tmj.2017.0298. Epub 2018 May 4.

PMID:
29727261
16.

Achieving Service Change Through the Implementation of a Trauma-Informed Care Training Program Within a Mental Health Service.

Palfrey N, Reay RE, Aplin V, Cubis JC, McAndrew V, Riordan DM, Raphael B.

Community Ment Health J. 2018 Apr 28. doi: 10.1007/s10597-018-0272-6. [Epub ahead of print]

PMID:
29705979
17.

Inferring parsimonious migration histories for metastatic cancers.

El-Kebir M, Satas G, Raphael BJ.

Nat Genet. 2018 May;50(5):718-726. doi: 10.1038/s41588-018-0106-z. Epub 2018 Apr 26.

18.

Phylogenetic Copy-Number Factorization of Multiple Tumor Samples.

Zaccaria S, El-Kebir M, Klau GW, Raphael BJ.

J Comput Biol. 2018 Jul;25(7):689-708. doi: 10.1089/cmb.2017.0253. Epub 2018 Apr 16.

PMID:
29658782
19.

Pathogenic Germline Variants in 10,389 Adult Cancers.

Huang KL, Mashl RJ, Wu Y, Ritter DI, Wang J, Oh C, Paczkowska M, Reynolds S, Wyczalkowski MA, Oak N, Scott AD, Krassowski M, Cherniack AD, Houlahan KE, Jayasinghe R, Wang LB, Zhou DC, Liu D, Cao S, Kim YW, Koire A, McMichael JF, Hucthagowder V, Kim TB, Hahn A, Wang C, McLellan MD, Al-Mulla F, Johnson KJ; Cancer Genome Atlas Research Network, Lichtarge O, Boutros PC, Raphael B, Lazar AJ, Zhang W, Wendl MC, Govindan R, Jain S, Wheeler D, Kulkarni S, Dipersio JF, Reimand J, Meric-Bernstam F, Chen K, Shmulevich I, Plon SE, Chen F, Ding L.

Cell. 2018 Apr 5;173(2):355-370.e14. doi: 10.1016/j.cell.2018.03.039.

20.

Innovative Discharge Process for Families with Pediatric Short Bowel Syndrome: A Prospective Nonrandomized Trial.

Raphael BP, Jorina M, Gallotto M, Grullon G, Dalton M, Takvorian-Bené M, Tascione C, Rosa C, McClelland J, Gray M, Potemkin AK, Glavin C, Gura KM, Murphy MK, Leger K, Mahoney J, Kerr J, Ozonoff A, Duggan CP.

JPEN J Parenter Enteral Nutr. 2018 Nov;42(8):1295-1303. doi: 10.1002/jpen.1158. Epub 2018 Mar 30.

PMID:
29603317
21.

Genetic Mechanisms of Immune Evasion in Colorectal Cancer.

Grasso CS, Giannakis M, Wells DK, Hamada T, Mu XJ, Quist M, Nowak JA, Nishihara R, Qian ZR, Inamura K, Morikawa T, Nosho K, Abril-Rodriguez G, Connolly C, Escuin-Ordinas H, Geybels MS, Grady WM, Hsu L, Hu-Lieskovan S, Huyghe JR, Kim YJ, Krystofinski P, Leiserson MDM, Montoya DJ, Nadel BB, Pellegrini M, Pritchard CC, Puig-Saus C, Quist EH, Raphael BJ, Salipante SJ, Shin DS, Shinbrot E, Shirts B, Shukla S, Stanford JL, Sun W, Tsoi J, Upfill-Brown A, Wheeler DA, Wu CJ, Yu M, Zaidi SH, Zaretsky JM, Gabriel SB, Lander ES, Garraway LA, Hudson TJ, Fuchs CS, Ribas A, Ogino S, Peters U.

Cancer Discov. 2018 Jun;8(6):730-749. doi: 10.1158/2159-8290.CD-17-1327. Epub 2018 Mar 6.

PMID:
29510987
22.

The Integrated Genomic Landscape of Thymic Epithelial Tumors.

Radovich M, Pickering CR, Felau I, Ha G, Zhang H, Jo H, Hoadley KA, Anur P, Zhang J, McLellan M, Bowlby R, Matthew T, Danilova L, Hegde AM, Kim J, Leiserson MDM, Sethi G, Lu C, Ryan M, Su X, Cherniack AD, Robertson G, Akbani R, Spellman P, Weinstein JN, Hayes DN, Raphael B, Lichtenberg T, Leraas K, Zenklusen JC; Cancer Genome Atlas Network, Fujimoto J, Scapulatempo-Neto C, Moreira AL, Hwang D, Huang J, Marino M, Korst R, Giaccone G, Gokmen-Polar Y, Badve S, Rajan A, Ströbel P, Girard N, Tsao MS, Marx A, Tsao AS, Loehrer PJ.

Cancer Cell. 2018 Feb 12;33(2):244-258.e10. doi: 10.1016/j.ccell.2018.01.003.

23.

Comparative genome analysis reveals a complex population structure of Legionella pneumophila subspecies.

Kozak-Muiznieks NA, Morrison SS, Mercante JW, Ishaq MK, Johnson T, Caravas J, Lucas CE, Brown E, Raphael BH, Winchell JM.

Infect Genet Evol. 2018 Apr;59:172-185. doi: 10.1016/j.meegid.2018.02.008. Epub 2018 Feb 7.

PMID:
29427765
24.

Factors relating to high psychological distress in Indigenous Australians and their contribution to Indigenous-non-Indigenous disparities.

McNamara BJ, Banks E, Gubhaju L, Joshy G, Williamson A, Raphael B, Eades S.

Aust N Z J Public Health. 2018 Apr;42(2):145-152. doi: 10.1111/1753-6405.12766. Epub 2018 Jan 31.

PMID:
29384250
25.

Distribution of Legionella and bacterial community composition among regionally diverse US cooling towers.

Llewellyn AC, Lucas CE, Roberts SE, Brown EW, Nayak BS, Raphael BH, Winchell JM.

PLoS One. 2017 Dec 20;12(12):e0189937. doi: 10.1371/journal.pone.0189937. eCollection 2017.

26.

Identifying simultaneous rearrangements in cancer genomes.

Oesper L, Dantas S, Raphael BJ.

Bioinformatics. 2017 Nov 27. doi: 10.1093/bioinformatics/btx745. [Epub ahead of print]

27.

Identifying structural variants using linked-read sequencing data.

Elyanow R, Wu HT, Raphael BJ.

Bioinformatics. 2017 Nov 3. doi: 10.1093/bioinformatics/btx712. [Epub ahead of print]

28.

Legionnaires' Disease Outbreak Caused by Endemic Strain of Legionella pneumophila, New York, New York, USA, 2015.

Lapierre P, Nazarian E, Zhu Y, Wroblewski D, Saylors A, Passaretti T, Hughes S, Tran A, Lin Y, Kornblum J, Morrison SS, Mercante JW, Fitzhenry R, Weiss D, Raphael BH, Varma JK, Zucker HA, Rakeman JL, Musser KA.

Emerg Infect Dis. 2017 Nov;23(11):1784-1791. doi: 10.3201/eid2311.170308.

29.

Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors.

Kuipers J, Jahn K, Raphael BJ, Beerenwinkel N.

Genome Res. 2017 Nov;27(11):1885-1894. doi: 10.1101/gr.220707.117. Epub 2017 Oct 13.

30.

Tumor phylogeny inference using tree-constrained importance sampling.

Satas G, Raphael BJ.

Bioinformatics. 2017 Jul 15;33(14):i152-i160. doi: 10.1093/bioinformatics/btx270.

31.

Home Parenteral Nutrition and Intravenous Fluid Errors Discovered Through Novel Clinical Practice of Reconciling Compounding Records: A Case Series.

Murphy MK, Gura KM, Tascione C, Carey AN, Duggan CP, Raphael BP.

Nutr Clin Pract. 2017 Dec;32(6):820-825. doi: 10.1177/0884533617722759. Epub 2017 Aug 29.

PMID:
28850287
32.

Intestinal Rehabilitation Programs in the Management of Pediatric Intestinal Failure and Short Bowel Syndrome.

Merritt RJ, Cohran V, Raphael BP, Sentongo T, Volpert D, Warner BW, Goday PS; Nutrition Committee of the North American Society for Pediatric Gastroenterology, Hepatology and Nutrition.

J Pediatr Gastroenterol Nutr. 2017 Nov;65(5):588-596. doi: 10.1097/MPG.0000000000001722.

PMID:
28837507
33.

Characterization of Legionella Species from Watersheds in British Columbia, Canada.

Peabody MA, Caravas JA, Morrison SS, Mercante JW, Prystajecky NA, Raphael BH, Brinkman FSL.

mSphere. 2017 Aug 2;2(4). pii: e00246-17. doi: 10.1128/mSphere.00246-17. eCollection 2017 Jul-Aug.

34.

Novel Gene and Network Associations Found for Acute Lymphoblastic Leukemia Using Case-Control and Family-Based Studies in Multiethnic Populations.

Nakka P, Archer NP, Xu H, Lupo PJ, Raphael BJ, Yang JJ, Ramachandran S.

Cancer Epidemiol Biomarkers Prev. 2017 Oct;26(10):1531-1539. doi: 10.1158/1055-9965.EPI-17-0360. Epub 2017 Jul 27.

35.

Vital Signs: Health Care-Associated Legionnaires' Disease Surveillance Data From 20 States and a Large Metropolitan Area-United States, 2015.

Soda EA, Barskey AE, Shah PP, Schrag S, Whitney CG, Arduino MJ, Reddy SC, Kunz JM, Hunter CM, Raphael BH, Cooley LA.

Am J Transplant. 2017 Aug;17(8):2215-2220. doi: 10.1111/ajt.14407.

36.

Place de la trithérapie dans la BPCO sévère : étude TRILOGY, un coup pour rien ?

Raphaël B, Fumeaux T.

Rev Med Suisse. 2016 Oct 5;12(533):1684. French. No abstract available.

PMID:
28686388
37.

Network propagation: a universal amplifier of genetic associations.

Cowen L, Ideker T, Raphael BJ, Sharan R.

Nat Rev Genet. 2017 Sep;18(9):551-562. doi: 10.1038/nrg.2017.38. Epub 2017 Jun 12. Review.

PMID:
28607512
38.

Vital Signs: Health Care-Associated Legionnaires' Disease Surveillance Data from 20 States and a Large Metropolitan Area - United States, 2015.

Soda EA, Barskey AE, Shah PP, Schrag S, Whitney CG, Arduino MJ, Reddy SC, Kunz JM, Hunter CM, Raphael BH, Cooley LA.

MMWR Morb Mortal Wkly Rep. 2017 Jun 9;66(22):584-589. doi: 10.15585/mmwr.mm6622e1.

39.

GenomeVIP: a cloud platform for genomic variant discovery and interpretation.

Mashl RJ, Scott AD, Huang KL, Wyczalkowski MA, Yoon CJ, Niu B, DeNardo E, Yellapantula VD, Handsaker RE, Chen K, Koboldt DC, Ye K, Fenyö D, Raphael BJ, Wendl MC, Ding L.

Genome Res. 2017 Aug;27(8):1450-1459. doi: 10.1101/gr.211656.116. Epub 2017 May 18.

40.

Complexity and algorithms for copy-number evolution problems.

El-Kebir M, Raphael BJ, Shamir R, Sharan R, Zaccaria S, Zehavi M, Zeira R.

Algorithms Mol Biol. 2017 May 16;12:13. doi: 10.1186/s13015-017-0103-2. eCollection 2017.

41.

Healthcare reform literacy among academic dermatologists: What we know and don't know about the Affordable Care Act.

Raphael BA, Chen S, Stoff B.

Dermatol Online J. 2017 Jan 15;23(1). pii: 13030/qt8d64j78f.

42.

Bone loss in C57BL/6J-OlaHsd mice, a substrain of C57BL/6J carrying mutated alpha-synuclein and multimerin-1 genes.

Liron T, Raphael B, Hiram-Bab S, Bab IA, Gabet Y.

J Cell Physiol. 2018 Jan;233(1):371-377. doi: 10.1002/jcp.25895. Epub 2017 Jun 5.

PMID:
28266709
43.

Complete Genome Sequences of Legionella pneumophila subsp. fraseri Strains Detroit-1 and Dallas 1E.

Raphael BH, Kozak-Muiznieks NA, Morrison SS, Mercante JW, Winchell JM.

Genome Announc. 2017 Feb 2;5(5). pii: e01525-16. doi: 10.1128/genomeA.01525-16.

44.

Genomic Analysis Reveals Novel Diversity among the 1976 Philadelphia Legionnaires' Disease Outbreak Isolates and Additional ST36 Strains.

Mercante JW, Morrison SS, Desai HP, Raphael BH, Winchell JM.

PLoS One. 2016 Sep 29;11(9):e0164074. doi: 10.1371/journal.pone.0164074. eCollection 2016.

45.

A weighted exact test for mutually exclusive mutations in cancer.

Leiserson MD, Reyna MA, Raphael BJ.

Bioinformatics. 2016 Sep 1;32(17):i736-i745. doi: 10.1093/bioinformatics/btw462.

46.

Complete Genome Sequences of the Historical Legionella pneumophila Strains OLDA and Pontiac.

Mercante JW, Morrison SS, Raphael BH, Winchell JM.

Genome Announc. 2016 Aug 25;4(4). pii: e00866-16. doi: 10.1128/genomeA.00866-16.

47.

Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma.

Zheng S, Cherniack AD, Dewal N, Moffitt RA, Danilova L, Murray BA, Lerario AM, Else T, Knijnenburg TA, Ciriello G, Kim S, Assie G, Morozova O, Akbani R, Shih J, Hoadley KA, Choueiri TK, Waldmann J, Mete O, Robertson AG, Wu HT, Raphael BJ, Shao L, Meyerson M, Demeure MJ, Beuschlein F, Gill AJ, Sidhu SB, Almeida MQ, Fragoso MCBV, Cope LM, Kebebew E, Habra MA, Whitsett TG, Bussey KJ, Rainey WE, Asa SL, Bertherat J, Fassnacht M, Wheeler DA; Cancer Genome Atlas Research Network, Hammer GD, Giordano TJ, Verhaak RGW.

Cancer Cell. 2016 Aug 8;30(2):363. doi: 10.1016/j.ccell.2016.07.013. Epub 2016 Aug 8. No abstract available.

48.

Gene and Network Analysis of Common Variants Reveals Novel Associations in Multiple Complex Diseases.

Nakka P, Raphael BJ, Ramachandran S.

Genetics. 2016 Oct;204(2):783-798. Epub 2016 Aug 3.

49.

Erratum to: CoMEt: a statistical approach to identify combinations of mutually exclusive alterations in cancer.

Leiserson MD, Wu HT, Vandin F, Raphael BJ.

Genome Biol. 2016 Aug 2;17(1):168. No abstract available.

50.

Inferring the Mutational History of a Tumor Using Multi-state Perfect Phylogeny Mixtures.

El-Kebir M, Satas G, Oesper L, Raphael BJ.

Cell Syst. 2016 Jul;3(1):43-53. doi: 10.1016/j.cels.2016.07.004.

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