Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 124

1.

Genome Damage Sensing Leads to Tissue Homeostasis in Drosophila.

Khan C, Muliyil S, Rao BJ.

Int Rev Cell Mol Biol. 2019;345:173-224. doi: 10.1016/bs.ircmb.2018.12.001. Epub 2019 Jan 14.

PMID:
30904193
2.

Human RAD52 protein regulates homologous recombination and checkpoint function in BRCA2 deficient cells.

Mahajan S, Raina K, Verma S, Rao BJ.

Int J Biochem Cell Biol. 2019 Feb;107:128-139. doi: 10.1016/j.biocel.2018.12.013. Epub 2018 Dec 24.

PMID:
30590106
3.

Selective suppression of CARS signal with two competing stimulated Raman scattering processes.

Rao BJ, Choi DS, Cho M.

J Chem Phys. 2018 Dec 21;149(23):234202. doi: 10.1063/1.5053435.

PMID:
30579296
4.

Structural characterization of a novel KH-domain containing plant chloroplast endonuclease.

Rout AK, Singh H, Patel S, Raghvan V, Gautam S, Minda R, Rao BJ, Chary KVR.

Sci Rep. 2018 Sep 13;8(1):13750. doi: 10.1038/s41598-018-31142-w.

5.

Selective suppression of CARS signal with three-beam competing stimulated Raman scattering processes.

Choi DS, Rao BJ, Kim D, Shim SH, Rhee H, Cho M.

Phys Chem Chem Phys. 2018 Jun 27;20(25):17156-17170. doi: 10.1039/c8cp02230e.

PMID:
29900451
6.

Three-beam double stimulated Raman scatterings: Cascading configuration.

Rao BJ, Cho M.

J Chem Phys. 2018 Mar 21;148(11):114201. doi: 10.1063/1.5022092.

PMID:
29566530
8.

How do biological systems escape 'chaotic' state?

Rao BJ.

J Biosci. 2018 Mar;43(1):1-2. No abstract available.

9.

Irregular designs and Darwinism in biology: Genomes as the test case.

Rao BJ.

J Biosci. 2017 Dec;42(4):523-525. No abstract available.

10.

The initiator caspase Dronc plays a non-apoptotic role in promoting DNA damage signalling in D. melanogaster.

Khan C, Muliyil S, Ayyub C, Rao BJ.

J Cell Sci. 2017 Sep 15;130(18):2984-2995. doi: 10.1242/jcs.200782. Epub 2017 Jul 27.

11.

Chromosome territory relocation paradigm during DNA damage response: Some insights from molecular biology to physics.

Fatakia SN, Kulashreshtha M, Mehta IS, Rao BJ.

Nucleus. 2017 Sep 3;8(5):449-460. doi: 10.1080/19491034.2017.1313938. Epub 2017 Jun 22.

12.

Resonant femtosecond stimulated Raman spectroscopy with an intense actinic pump pulse: Application to conical intersections.

Rao BJ, Gelin MF, Domcke W.

J Chem Phys. 2017 Feb 28;146(8):084105. doi: 10.1063/1.4976317.

PMID:
28249413
13.
14.
15.

Chromosome territory relocation during DNA repair requires nuclear myosin 1 recruitment to chromatin mediated by ϒ-H2AX signaling.

Kulashreshtha M, Mehta IS, Kumar P, Rao BJ.

Nucleic Acids Res. 2016 Sep 30;44(17):8272-91. doi: 10.1093/nar/gkw573. Epub 2016 Jun 30.

16.

Sequence/structural analysis of xylem proteome emphasizes pathogenesis-related proteins, chitinases and β-1, 3-glucanases as key players in grapevine defense against Xylella fastidiosa.

Chakraborty S, Nascimento R, Zaini PA, Gouran H, Rao BJ, Goulart LR, Dandekar AM.

PeerJ. 2016 May 24;4:e2007. doi: 10.7717/peerj.2007. eCollection 2016.

17.

Femtosecond stimulated Raman spectroscopy as a tool to detect molecular vibrations in ground and excited electronic states.

Gelin MF, Domcke W, Rao BJ.

J Chem Phys. 2016 May 14;144(18):184307. doi: 10.1063/1.4948707.

PMID:
27179484
18.

Corrigendum: The Type II Secreted Lipase/Esterase LesA is a Key Virulence Factor Required for Xylella fastidiosa Pathogenesis in Grapevines.

Nascimento R, Gouran H, Chakraborty S, Gillespie HW, Almeida-Souza HO, Tu A, Rao BJ, Feldstein PA, Bruening G, Goulart LR, Dandekar AM.

Sci Rep. 2016 Feb 25;6:21575. doi: 10.1038/srep21575. No abstract available.

19.

Resonant Femtosecond Stimulated Raman Spectra: Theory and Simulations.

Rao BJ, Gelin MF, Domcke W.

J Phys Chem A. 2016 May 19;120(19):3286-95. doi: 10.1021/acs.jpca.5b12316. Epub 2016 Mar 7.

PMID:
26910808
20.

YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut.

Chakraborty S, Britton M, Wegrzyn J, Butterfield T, Martínez-García PJ, Reagan RL, Rao BJ, Leslie CA, Aradhaya M, Neale D, Woeste K, Dandekar AM.

Version 2. F1000Res. 2015 Jun 17 [revised 2015 Jan 1];4:155. doi: 10.12688/f1000research.6617.2. eCollection 2015.

21.

The Type II Secreted Lipase/Esterase LesA is a Key Virulence Factor Required for Xylella fastidiosa Pathogenesis in Grapevines.

Nascimento R, Gouran H, Chakraborty S, Gillespie HW, Almeida-Souza HO, Tu A, Rao BJ, Feldstein PA, Bruening G, Goulart LR, Dandekar AM.

Sci Rep. 2016 Jan 12;6:18598. doi: 10.1038/srep18598. Erratum in: Sci Rep. 2016;6:21575.

22.

Effect of Initial Vibrational-State Excitation on Subfemtosecond Photodynamics of Water.

Rao BJ, Varandas AJ.

J Phys Chem A. 2015 Dec 17;119(50):12367-75. doi: 10.1021/acs.jpca.5b07593. Epub 2015 Nov 6.

PMID:
26496069
23.

Subfemtosecond quantum nuclear dynamics in water isotopomers.

Rao BJ, Varandas AJ.

J Phys Chem A. 2015 May 21;119(20):4856-63. doi: 10.1021/acs.jpca.5b02129. Epub 2015 May 7.

PMID:
25909148
24.

Characterizing alpha helical properties of Ebola viral proteins as potential targets for inhibition of alpha-helix mediated protein-protein interactions.

Chakraborty S, Rao BJ, Asgeirsson B, Dandekar A.

Version 3. F1000Res. 2014 Oct 24 [revised 2015 Jan 1];3:251. doi: 10.12688/f1000research.5573.3. eCollection 2014.

25.

Directed evolution induces tributyrin hydrolysis in a virulence factor of Xylella fastidiosa using a duplicated gene as a template.

Gouran H, Chakraborty S, Rao BJ, Asgeirsson B, Dandekar A.

F1000Res. 2014 Sep 9;3:215. doi: 10.12688/f1000research.5147.1. eCollection 2014.

26.

Enhanced excision repair and lack of PSII activity contribute to higher UV survival of Chlamydomonas reinhardtii cells in dark.

Chaudhari VR, Vyawahare A, Bhattacharjee SK, Rao BJ.

Plant Physiol Biochem. 2015 Mar;88:60-9. doi: 10.1016/j.plaphy.2015.02.001. Epub 2015 Feb 3.

PMID:
25660990
27.

Site-specific fluorescence dynamics in an RNA 'thermometer' reveals the role of ribosome binding in its temperature-sensitive switch function.

Narayan S, Kombrabail MH, Das S, Singh H, Chary KV, Rao BJ, Krishnamoorthy G.

Nucleic Acids Res. 2015 Jan;43(1):493-503. doi: 10.1093/nar/gku1264. Epub 2014 Dec 3.

28.

Myositis ossificans traumatica of temporalis and medial pterygoid muscle.

Reddy SP, Prakash AP, Keerthi M, Rao BJ.

J Oral Maxillofac Pathol. 2014 May;18(2):271-5. doi: 10.4103/0973-029X.140781.

29.

Quantitative analysis of chromosome localization in the nucleus.

Chakraborty S, Mehta I, Kulashreshtha M, Rao BJ.

Methods Mol Biol. 2015;1228:223-33. doi: 10.1007/978-1-4939-1680-1_17.

PMID:
25311133
30.

Preparation of efficient excision repair competent cell-free extracts from C. reinhardtii cells.

Chaudhari V, Raghavan V, Rao BJ.

PLoS One. 2014 Oct 9;9(10):e109160. doi: 10.1371/journal.pone.0109160. eCollection 2014.

31.

Acetate and bicarbonate assimilation and metabolite formation in Chlamydomonas reinhardtii: a 13C-NMR study.

Singh H, Shukla MR, Chary KV, Rao BJ.

PLoS One. 2014 Sep 10;9(9):e106457. doi: 10.1371/journal.pone.0106457. eCollection 2014.

32.

Uncovering the basis of ATP hydrolysis activity in purified human p53 protein: a reinvestigation.

Verma S, Rao BJ.

PLoS One. 2014 Apr 1;9(4):e93652. doi: 10.1371/journal.pone.0093652. eCollection 2014.

33.

(1)H, (13)C and (15)N NMR assignments of Mg (2+) bound form of UV inducible transcript protein (UVI31+) from Chlamydomonas reinhardtii.

Singh H, Verma D, Rao BJ, Chary KV.

Biomol NMR Assign. 2015 Apr;9(1):93-7. doi: 10.1007/s12104-014-9551-5. Epub 2014 Mar 18.

PMID:
24638198
34.

Regulation of CCM genes in Chlamydomonas reinhardtii during conditions of light-dark cycles in synchronous cultures.

Tirumani S, Kokkanti M, Chaudhari V, Shukla M, Rao BJ.

Plant Mol Biol. 2014 Jun;85(3):277-86. doi: 10.1007/s11103-014-0183-z. Epub 2014 Mar 4.

PMID:
24590314
35.

Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms.

Chakraborty S, Venkatramani R, Rao BJ, Asgeirsson B, Dandekar AM.

Version 3. F1000Res. 2013 Oct 10 [revised 2013 Jan 1];2:211. doi: 10.12688/f1000research.2-211.v3. eCollection 2013.

36.

The PDB database is a rich source of alpha-helical anti-microbial peptides to combat disease causing pathogens.

Chakraborty S, Phu M, de Morais TP, Nascimento R, Goulart LR, Rao BJ, Asgeirsson B, Dandekar AM.

Version 2. F1000Res. 2014 Dec 5 [revised 2015 Jan 1];3:295. doi: 10.12688/f1000research.5802.2. eCollection 2014.

37.

Chromosome territories reposition during DNA damage-repair response.

Mehta IS, Kulashreshtha M, Chakraborty S, Kolthur-Seetharam U, Rao BJ.

Genome Biol. 2013 Dec 13;14(12):R135. doi: 10.1186/gb-2013-14-12-r135.

38.

Domain of validity of the perturbative approach to femtosecond optical spectroscopy.

Gelin MF, Rao BJ, Nest M, Domcke W.

J Chem Phys. 2013 Dec 14;139(22):224107. doi: 10.1063/1.4836636.

PMID:
24329056
39.

Flagella as a novel alignment medium for the measurement of residual dipolar couplings in proteins.

Singh H, Shukla M, Rao BJ, Chary KV.

Chem Commun (Camb). 2013 Dec 18;49(97):11403-5. doi: 10.1039/c3cc46233a.

PMID:
24165953
40.

¹H, ¹³C and ¹⁵N NMR assignments of a mutant of UV inducible transcript (S55A-UVI31+) from Chlamydomonas reinhardtii.

Singh H, Rao BJ, Chary KV.

Biomol NMR Assign. 2014 Oct;8(2):371-4. doi: 10.1007/s12104-013-9520-4. Epub 2013 Aug 27.

PMID:
23979961
41.

A computational module assembled from different protease family motifs identifies PI PLC from Bacillus cereus as a putative prolyl peptidase with a serine protease scaffold.

Rendón-Ramírez A, Shukla M, Oda M, Chakraborty S, Minda R, Dandekar AM, Ásgeirsson B, Goñi FM, Rao BJ.

PLoS One. 2013 Aug 5;8(8):e70923. doi: 10.1371/journal.pone.0070923. Print 2013.

42.

p53 suppresses BRCA2-stimulated ATPase and strand exchange functions of human RAD51.

Verma S, Rao BJ.

J Biochem. 2013 Sep;154(3):237-48. doi: 10.1093/jb/mvt040. Epub 2013 May 15.

PMID:
23678008
43.

IMACULAT - an open access package for the quantitative analysis of chromosome localization in the nucleus.

Mehta I, Chakraborty S, Rao BJ.

PLoS One. 2013;8(4):e61386. doi: 10.1371/journal.pone.0061386. Epub 2013 Apr 8.

44.

Promiscuity-based enzyme selection for rational directed evolution experiments.

Chakraborty S, Minda R, Salaye L, Dandekar AM, Bhattacharjee SK, Rao BJ.

Methods Mol Biol. 2013;978:205-16. doi: 10.1007/978-1-62703-293-3_15.

PMID:
23423899
45.

UVI31+ is a DNA endonuclease that dynamically localizes to chloroplast pyrenoids in C. reinhardtii.

Shukla M, Minda R, Singh H, Tirumani S, Chary KV, Rao BJ.

PLoS One. 2012;7(12):e51913. doi: 10.1371/journal.pone.0051913. Epub 2012 Dec 17.

46.

The dipeptidyl peptidase IV inhibitors vildagliptin and K-579 inhibit a phospholipase C: a case of promiscuous scaffolds in proteins.

Chakraborty S, Rendón-Ramírez A, Ásgeirsson B, Dutta M, Ghosh AS, Oda M, Venkatramani R, Rao BJ, Dandekar AM, Goñi FM.

Version 3. F1000Res. 2013 Dec 27 [revised 2015 Jan 1];2:286. doi: 10.12688/f1000research.2-286.v3. eCollection 2013.

47.

The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment.

Chakraborty S, Venkatramani R, Rao BJ, Asgeirsson B, Dandekar AM.

Version 3. F1000Res. 2013 Nov 13 [revised 2014 Jan 1];2:243. doi: 10.12688/f1000research.2-243.v3. eCollection 2013.

48.

Structural phylogeny by profile extraction and multiple superimposition using electrostatic congruence as a discriminator.

Chakraborty S, Rao BJ, Baker N, Asgeirsson B.

Intrinsically Disord Proteins. 2013;1. pii: e25463.

49.

¹H, ¹³C and ¹⁵N resonance assignments of S114A mutant of UVI31+ from Chlamydomonas reinhardtii.

Singh H, Raghavan V, Shukla M, Rao BJ, Chary KV.

Biomol NMR Assign. 2014 Apr;8(1):71-4. doi: 10.1007/s12104-012-9455-1. Epub 2012 Dec 25.

50.

A measure of the broad substrate specificity of enzymes based on 'duplicate' catalytic residues.

Chakraborty S, Ásgeirsson B, Rao BJ.

PLoS One. 2012;7(11):e49313. doi: 10.1371/journal.pone.0049313. Epub 2012 Nov 16.

Supplemental Content

Support Center