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Items: 1 to 50 of 58

1.

Recurrent non-coding U1-snRNA mutations drive cryptic splicing in Shh medulloblastoma.

Suzuki H, Kumar SA, Shuai S, Diaz-Navarro A, Gutierrez-Fernandez A, De Antonellis P, Cavalli FMG, Juraschka K, Farooq H, Shibahara I, Vladoiu MC, Zhang J, Abeysundara N, Przelicki D, Skowron P, Gauer N, Luu B, Daniels C, Wu X, Forget A, Momin A, Wang J, Dong W, Kim SK, Grajkowska WA, Jouvet A, Fèvre-Montange M, Garrè ML, Rao AAN, Giannini C, Kros JM, French PJ, Jabado N, Ng HK, Poon WS, Eberhart CG, Pollack IF, Olson JM, Weiss WA, Kumabe T, López-Aguilar E, Lach B, Massimino M, Van Meir EG, Rubin JB, Vibhakar R, Chambless LB, Kijima N, Klekner A, Bognár L, Chan JA, Faria CC, Ragoussis J, Pfister SM, Goldenberg A, Wechsler-Reya RJ, Bailey SD, Garzia L, Morrissy AS, Marra MA, Huang X, Malkin D, Ayrault O, Ramaswamy V, Puente XS, Calarco JA, Stein L, Taylor MD.

Nature. 2019 Oct 9. doi: 10.1038/s41586-019-1650-0. [Epub ahead of print]

PMID:
31597162
2.

Application of 2D-DIGE and iTRAQ Workflows to Analyze CSF in Gliomas.

Rao AA, Mehta K, Gahoi N, Srivastava S.

Methods Mol Biol. 2019;2044:81-110. doi: 10.1007/978-1-4939-9706-0_6.

PMID:
31432408
3.

Heterogeneity within the PF-EPN-B ependymoma subgroup.

Cavalli FMG, Hübner JM, Sharma T, Luu B, Sill M, Zapotocky M, Mack SC, Witt H, Lin T, Shih DJH, Ho B, Santi M, Emery L, Hukin J, Dunham C, McLendon RE, Lipp ES, Gururangan S, Grossbach A, French P, Kros JM, van Veelen MC, Rao AAN, Giannini C, Leary S, Jung S, Faria CC, Mora J, Schüller U, Alonso MM, Chan JA, Klekner A, Chambless LB, Hwang EI, Massimino M, Eberhart CG, Karajannis MA, Lu B, Liau LM, Zollo M, Ferrucci V, Carlotti C, Tirapelli DPC, Tabori U, Bouffet E, Ryzhova M, Ellison DW, Merchant TE, Gilbert MR, Armstrong TS, Korshunov A, Pfister SM, Taylor MD, Aldape K, Pajtler KW, Kool M, Ramaswamy V.

Acta Neuropathol. 2018 Aug;136(2):227-237. doi: 10.1007/s00401-018-1888-x. Epub 2018 Jul 17.

4.

A Fungus Spores Dataset and a Convolutional Neural Network Based Approach for Fungus Detection.

Tahir MW, Zaidi NA, Rao AA, Blank R, Vellekoop MJ, Lang W.

IEEE Trans Nanobioscience. 2018 Jul;17(3):281-290. doi: 10.1109/TNB.2018.2839585. Epub 2018 May 22.

PMID:
29994314
5.

A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations.

Toor JS, Rao AA, McShan AC, Yarmarkovich M, Nerli S, Yamaguchi K, Madejska AA, Nguyen S, Tripathi S, Maris JM, Salama SR, Haussler D, Sgourakis NG.

Front Immunol. 2018 Jan 30;9:99. doi: 10.3389/fimmu.2018.00099. eCollection 2018.

6.

Toil enables reproducible, open source, big biomedical data analyses.

Vivian J, Rao AA, Nothaft FA, Ketchum C, Armstrong J, Novak A, Pfeil J, Narkizian J, Deran AD, Musselman-Brown A, Schmidt H, Amstutz P, Craft B, Goldman M, Rosenbloom K, Cline M, O'Connor B, Hanna M, Birger C, Kent WJ, Patterson DA, Joseph AD, Zhu J, Zaranek S, Getz G, Haussler D, Paten B.

Nat Biotechnol. 2017 Apr 11;35(4):314-316. doi: 10.1038/nbt.3772. No abstract available.

7.

Therapeutic Impact of Cytoreductive Surgery and Irradiation of Posterior Fossa Ependymoma in the Molecular Era: A Retrospective Multicohort Analysis.

Ramaswamy V, Hielscher T, Mack SC, Lassaletta A, Lin T, Pajtler KW, Jones DT, Luu B, Cavalli FM, Aldape K, Remke M, Mynarek M, Rutkowski S, Gururangan S, McLendon RE, Lipp ES, Dunham C, Hukin J, Eisenstat DD, Fulton D, van Landeghem FK, Santi M, van Veelen ML, Van Meir EG, Osuka S, Fan X, Muraszko KM, Tirapelli DP, Oba-Shinjo SM, Marie SK, Carlotti CG, Lee JY, Rao AA, Giannini C, Faria CC, Nunes S, Mora J, Hamilton RL, Hauser P, Jabado N, Petrecca K, Jung S, Massimi L, Zollo M, Cinalli G, Bognár L, Klekner A, Hortobágyi T, Leary S, Ermoian RP, Olson JM, Leonard JR, Gardner C, Grajkowska WA, Chambless LB, Cain J, Eberhart CG, Ahsan S, Massimino M, Giangaspero F, Buttarelli FR, Packer RJ, Emery L, Yong WH, Soto H, Liau LM, Everson R, Grossbach A, Shalaby T, Grotzer M, Karajannis MA, Zagzag D, Wheeler H, von Hoff K, Alonso MM, Tuñon T, Schüller U, Zitterbart K, Sterba J, Chan JA, Guzman M, Elbabaa SK, Colman H, Dhall G, Fisher PG, Fouladi M, Gajjar A, Goldman S, Hwang E, Kool M, Ladha H, Vera-Bolanos E, Wani K, Lieberman F, Mikkelsen T, Omuro AM, Pollack IF, Prados M, Robins HI, Soffietti R, Wu J, Metellus P, Tabori U, Bartels U, Bouffet E, Hawkins CE, Rutka JT, Dirks P, Pfister SM, Merchant TE, Gilbert MR, Armstrong TS, Korshunov A, Ellison DW, Taylor MD.

J Clin Oncol. 2016 Jul 20;34(21):2468-77. doi: 10.1200/JCO.2015.65.7825. Epub 2016 Jun 6.

8.

A Pictorial Review of Changes in the BI-RADS Fifth Edition.

Rao AA, Feneis J, Lalonde C, Ojeda-Fournier H.

Radiographics. 2016 May-Jun;36(3):623-39. doi: 10.1148/rg.2016150178. Epub 2016 Apr 15. Review.

PMID:
27082663
9.

Prognostic value of medulloblastoma extent of resection after accounting for molecular subgroup: a retrospective integrated clinical and molecular analysis.

Thompson EM, Hielscher T, Bouffet E, Remke M, Luu B, Gururangan S, McLendon RE, Bigner DD, Lipp ES, Perreault S, Cho YJ, Grant G, Kim SK, Lee JY, Rao AAN, Giannini C, Li KKW, Ng HK, Yao Y, Kumabe T, Tominaga T, Grajkowska WA, Perek-Polnik M, Low DCY, Seow WT, Chang KTE, Mora J, Pollack IF, Hamilton RL, Leary S, Moore AS, Ingram WJ, Hallahan AR, Jouvet A, Fèvre-Montange M, Vasiljevic A, Faure-Conter C, Shofuda T, Kagawa N, Hashimoto N, Jabado N, Weil AG, Gayden T, Wataya T, Shalaby T, Grotzer M, Zitterbart K, Sterba J, Kren L, Hortobágyi T, Klekner A, László B, Pócza T, Hauser P, Schüller U, Jung S, Jang WY, French PJ, Kros JM, van Veelen MC, Massimi L, Leonard JR, Rubin JB, Vibhakar R, Chambless LB, Cooper MK, Thompson RC, Faria CC, Carvalho A, Nunes S, Pimentel J, Fan X, Muraszko KM, López-Aguilar E, Lyden D, Garzia L, Shih DJH, Kijima N, Schneider C, Adamski J, Northcott PA, Kool M, Jones DTW, Chan JA, Nikolic A, Garre ML, Van Meir EG, Osuka S, Olson JJ, Jahangiri A, Castro BA, Gupta N, Weiss WA, Moxon-Emre I, Mabbott DJ, Lassaletta A, Hawkins CE, Tabori U, Drake J, Kulkarni A, Dirks P, Rutka JT, Korshunov A, Pfister SM, Packer RJ, Ramaswamy V, Taylor MD.

Lancet Oncol. 2016 Apr;17(4):484-495. doi: 10.1016/S1470-2045(15)00581-1. Epub 2016 Mar 12.

10.

Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma.

Ceccarelli M, Barthel FP, Malta TM, Sabedot TS, Salama SR, Murray BA, Morozova O, Newton Y, Radenbaugh A, Pagnotta SM, Anjum S, Wang J, Manyam G, Zoppoli P, Ling S, Rao AA, Grifford M, Cherniack AD, Zhang H, Poisson L, Carlotti CG Jr, Tirapelli DP, Rao A, Mikkelsen T, Lau CC, Yung WK, Rabadan R, Huse J, Brat DJ, Lehman NL, Barnholtz-Sloan JS, Zheng S, Hess K, Rao G, Meyerson M, Beroukhim R, Cooper L, Akbani R, Wrensch M, Haussler D, Aldape KD, Laird PW, Gutmann DH; TCGA Research Network, Noushmehr H, Iavarone A, Verhaak RG.

Cell. 2016 Jan 28;164(3):550-63. doi: 10.1016/j.cell.2015.12.028.

11.

Nystagmus in an Emaciated Infant.

Dhannawat SS, Rao AA, Brodsky MC.

JAMA Ophthalmol. 2015 Nov;133(11):1349-50. doi: 10.1001/jamaophthalmol.2015.1940. No abstract available.

PMID:
26313853
12.

Congenital amegakaryocytic thrombocytopenia: a case report of pediatric twins undergoing matched unrelated bone marrow transplantation.

Rao AA, Gourde JA, Marri P, Galardy PJ, Khan SP, Rodriguez V.

J Pediatr Hematol Oncol. 2015 May;37(4):304-6. doi: 10.1097/MPH.0000000000000247.

PMID:
25171451
13.

A rare case of ipsilateral shoulder and thumb CMC joint neuropathic arthropathy.

Butala RR, Arora M, Rao AA, Samant PD, Mukherjee S.

J Surg Case Rep. 2014 Jun 9;2014(6). pii: rju054. doi: 10.1093/jscr/rju054.

14.

A diabetic retinopathy detection method using an improved pillar K-means algorithm.

Gogula SV, Divakar Ch, Satyanarayana Ch, Rao AA.

Bioinformation. 2014 Jan 29;10(1):28-32. doi: 10.6026/97320630010028. eCollection 2014.

15.

SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data.

Pattnaik S, Gupta S, Rao AA, Panda B.

BMC Bioinformatics. 2014 Feb 5;15:40. doi: 10.1186/1471-2105-15-40.

16.

Agonistic approach of omega-3, omega-6 and its metabolites with BDNF: An in-silico study.

Kumar YP, Srinivas GS, E YM, Malla L, Rao AA.

Bioinformation. 2013 Nov 11;9(18):908-11. doi: 10.6026/97320630009908. eCollection 2013.

17.

Proteomic analysis of Streptomyces coelicolor in response to Ciprofloxacin challenge.

Rao AA, Patkari M, Reddy PJ, Srivastava R, Pendharkar N, Rapole S, Mehra S, Srivastava S.

J Proteomics. 2014 Jan 31;97:222-34. doi: 10.1016/j.jprot.2013.08.013. Epub 2013 Aug 28.

PMID:
23994098
18.

Views and opinion on BDNF as a target for diabetic cognitive dysfunction.

Rao AA.

Bioinformation. 2013 Jun 29;9(11):551-4. doi: 10.6026/97320630009551. Print 2013.

19.

A clinical update and radiologic review of pediatric orbital and ocular tumors.

Rao AA, Naheedy JH, Chen JY, Robbins SL, Ramkumar HL.

J Oncol. 2013;2013:975908. doi: 10.1155/2013/975908. Epub 2013 Mar 12.

20.

A tool for the post data analysis of screened compounds derived from computer-aided docking scores.

Rao GN, Rao AA, Rao PS, Muppalaneni NB.

Bioinformation. 2013;9(4):207-9. doi: 10.6026/97320630009207. Epub 2013 Feb 21.

21.

Virtual screening of plant derived compounds for aldose reductase inhibition using molecular docking.

Muppalaneni NB, Rao AA.

Bioinformation. 2012;8(20):980-3. doi: 10.6026/97320630008980. Epub 2012 Oct 13.

22.

Advances in binding free energies calculations: QM/MM-based free energy perturbation method for drug design.

Rathore RS, Sumakanth M, Reddy MS, Reddanna P, Rao AA, Erion MD, Reddy MR.

Curr Pharm Des. 2013;19(26):4674-86. Review.

PMID:
23260025
23.

COPS: a sensitive and accurate tool for detecting somatic Copy Number Alterations using short-read sequence data from paired samples.

Krishnan NM, Gaur P, Chaudhary R, Rao AA, Panda B.

PLoS One. 2012;7(10):e47812. doi: 10.1371/journal.pone.0047812. Epub 2012 Oct 22.

24.

Exploring the role of BCHE in the onset of Diabetes, Obesity and Neurological Disorders.

Rao AA, Jyothsna G, Shalini P, Kumar A, Bhattacharya A, Kashyap A.

Bioinformation. 2012;8(6):276-80. doi: 10.6026/97320630008276. Epub 2012 Mar 31.

25.

PDBToSDF: Create ligand structure files from PDB file.

Muppalaneni NB, Rao AA.

Bioinformation. 2011;6(10):383-6. Epub 2011 Aug 2.

26.

Therapeutic doses of cranial irradiation induce hippocampus-dependent cognitive deficits in young mice.

Rao AA, Ye H, Decker PA, Howe CL, Wetmore C.

J Neurooncol. 2011 Nov;105(2):191-8. doi: 10.1007/s11060-011-0582-9. Epub 2011 Apr 17.

PMID:
21499912
27.

Sequence analysis and homology modeling Gallus gallus glutathione S-transferase (Q08392).

Satheesh P, Rao AA, Sridhar GR, Srinivas K, Akula CS.

Adv Exp Med Biol. 2010;680:405-10. doi: 10.1007/978-1-4419-5913-3_46.

PMID:
20865525
28.

Butyrylcholinesterase in metabolic syndrome.

Sridhar GR, Rao AA, Srinivas K, Nirmala G, Lakshmi G, Suryanarayna D, Rao PV, Kaladhar DG, Kumar SV, Devi TU, Nitesh T, Hanuman T.

Med Hypotheses. 2010 Dec;75(6):648-51. doi: 10.1016/j.mehy.2010.08.008. Epub 2010 Aug 24.

PMID:
20797821
29.

Pleomorphic xanthoastrocytoma in children and adolescents.

Rao AA, Laack NN, Giannini C, Wetmore C.

Pediatr Blood Cancer. 2010 Aug;55(2):290-4. doi: 10.1002/pbc.22490.

PMID:
20582976
30.

Built environment and diabetes.

Pasala SK, Rao AA, Sridhar GR.

Int J Diabetes Dev Ctries. 2010 Apr;30(2):63-8. doi: 10.4103/0973-3930.62594.

31.

Cluster analysis and phylogenetic relationship in biomarker identification of type 2 diabetes and nephropathy.

Guttula SV, Rao AA, Sridhar GR, Chakravarthy MS, Nageshwararo K, Rao PV.

Int J Diabetes Dev Ctries. 2010 Jan;30(1):52-6. doi: 10.4103/0973-3930.60003.

32.

G-IMEx: A comprehensive software tool for detection of microsatellites from genome sequences.

Mudunuri SB, Kumar P, Rao AA, Pallamsetty S, Nagarajaram HA.

Bioinformation. 2010 Nov 1;5(5):221-3.

33.

Non-catheter related internal jugular vein thrombosis in a patient with severe haemophilia A.

Rao AA, Kumar R, Arteaga GM, Galardy PJ, Rodriguez V.

Haemophilia. 2009 Nov;15(6):1339-40. doi: 10.1111/j.1365-2516.2009.02093.x. Epub 2009 Aug 24. No abstract available.

PMID:
19702884
34.

Association of risk factors with spontaneous preterm birth after 28 weeks and neonatal outcome--a case-control study in a tertiary care referral centre.

Subapriya K, Rao AA.

J Indian Med Assoc. 2009 Feb;107(2):83-4, 86-7. Erratum in: J Indian Med Assoc. 2009 Mar;107(3):186.

PMID:
19585815
35.

A clinical decision support system using multilayer perceptron neural network to assess well being in diabetes.

Narasingarao MR, Manda R, Sridhar GR, Madhu K, Rao AA.

J Assoc Physicians India. 2009 Feb;57:127-33.

PMID:
19582980
36.

Techniques for integrating -omics data.

Akula SP, Miriyala RN, Thota H, Rao AA, Gedela S.

Bioinformation. 2009;3(6):284-6. Epub 2009 Jan 12.

37.

Bioinformatic analysis of functional proteins involved in obesity associated with diabetes.

Rao AA, Tayaru NM, Thota H, Changalasetty SB, Thota LS, Gedela S.

Int J Biomed Sci. 2008 Mar;4(1):70-3.

38.

Alzheimer's disease care and management: role of information technology.

Thota H, Rao AA, Reddi KK, Akula S, Changalasetty SB, Srinubabu G.

Bioinformation. 2007 Nov 3;2(3):91-5.

39.
40.

Proteomic analysis in diabetic cardiomyopathy using bioinformatics approach.

Rao AA, Thota H, Adapala R, Changalasetty SB, Gumpeny RS, Akula A, Thota LS, Challa SR, Rao MR, Das UN.

Bioinform Biol Insights. 2008 Jan 21;2:1-4.

41.

Gene expression profile in obesity and type 2 diabetes mellitus.

Das UN, Rao AA.

Lipids Health Dis. 2007 Dec 14;6:35.

42.

Zebrafish in the wild: a review of natural history and new notes from the field.

Engeszer RE, Patterson LB, Rao AA, Parichy DM.

Zebrafish. 2007 Spring;4(1):21-40. Review.

PMID:
18041940
43.

Development and validation of high-throughput liquid chromatography-tandem mass spectrometric method for simultaneous quantification of loratadine and desloratadine in human plasma.

Srinubabu G, Patel RS, Shedbalkar VP, Rao AA, Rao MN, Bandaru VV.

J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Dec 15;860(2):202-8. Epub 2007 Nov 1.

PMID:
18006392
44.
45.
46.

Bioinformatics analysis of diabetic retinopathy using functional protein sequences.

Rao AA, Thota H, Gumpeny RS, Akula A, Changalasetty SB, Challa SR, Ravavarapu T, Akula SP, Divakar Ch, Srinivas K, Das UN.

Med Hypotheses. 2008;70(1):148-55. Epub 2007 Jun 4.

PMID:
17548166
47.

Quality of care: assessment.

Rao AA, Sridhar GR.

Lipids Health Dis. 2007 Apr 19;6:12. Review.

48.

Functional connectivity of cortical networks involved in bimanual motor sequence learning.

Sun FT, Miller LM, Rao AA, D'Esposito M.

Cereb Cortex. 2007 May;17(5):1227-34. Epub 2006 Jul 19.

PMID:
16855008
49.

Phylogenetic tree construction of butyrylcholinesterase sequences in life forms.

Sridhar GR, Lakshmi PV, Rao AA.

J Assoc Physicians India. 2006 Feb;54:122-3.

PMID:
16715615
50.

Reliability of phase-encode mapping in the presence of spatial non-stationarity of response latency.

Rao AA, Talavage TM.

Neuroimage. 2005 Nov 15;28(3):563-78. Epub 2005 Aug 2.

PMID:
16061399

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