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Items: 21

1.

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.

Wenger AM, Peluso P, Rowell WJ, Chang PC, Hall RJ, Concepcion GT, Ebler J, Fungtammasan A, Kolesnikov A, Olson ND, Töpfer A, Alonge M, Mahmoud M, Qian Y, Chin CS, Phillippy AM, Schatz MC, Myers G, DePristo MA, Ruan J, Marschall T, Sedlazeck FJ, Zook JM, Li H, Koren S, Carroll A, Rank DR, Hunkapiller MW.

Nat Biotechnol. 2019 Aug 12. doi: 10.1038/s41587-019-0217-9. [Epub ahead of print]

PMID:
31406327
2.

Improved maize reference genome with single-molecule technologies.

Jiao Y, Peluso P, Shi J, Liang T, Stitzer MC, Wang B, Campbell MS, Stein JC, Wei X, Chin CS, Guill K, Regulski M, Kumari S, Olson A, Gent J, Schneider KL, Wolfgruber TK, May MR, Springer NM, Antoniou E, McCombie WR, Presting GG, McMullen M, Ross-Ibarra J, Dawe RK, Hastie A, Rank DR, Ware D.

Nature. 2017 Jun 22;546(7659):524-527. doi: 10.1038/nature22971. Epub 2017 Jun 12.

PMID:
28605751
3.

Phased diploid genome assembly with single-molecule real-time sequencing.

Chin CS, Peluso P, Sedlazeck FJ, Nattestad M, Concepcion GT, Clum A, Dunn C, O'Malley R, Figueroa-Balderas R, Morales-Cruz A, Cramer GR, Delledonne M, Luo C, Ecker JR, Cantu D, Rank DR, Schatz MC.

Nat Methods. 2016 Dec;13(12):1050-1054. doi: 10.1038/nmeth.4035. Epub 2016 Oct 17.

4.

Long-read, whole-genome shotgun sequence data for five model organisms.

Kim KE, Peluso P, Babayan P, Yeadon PJ, Yu C, Fisher WW, Chin CS, Rapicavoli NA, Rank DR, Li J, Catcheside DE, Celniker SE, Phillippy AM, Bergman CM, Landolin JM.

Sci Data. 2014 Nov 25;1:140045. doi: 10.1038/sdata.2014.45. eCollection 2014.

5.

CANVAS 1 and 2: analysis of clinical response at day 3 in two phase 3 trials of ceftaroline fosamil versus vancomycin plus aztreonam in treatment of acute bacterial skin and skin structure infections.

Friedland HD, O'Neal T, Biek D, Eckburg PB, Rank DR, Llorens L, Smith A, Witherell GW, Laudano JB, Thye D.

Antimicrob Agents Chemother. 2012 May;56(5):2231-6. doi: 10.1128/AAC.05738-11. Epub 2012 Feb 6.

6.
7.

A flexible and efficient template format for circular consensus sequencing and SNP detection.

Travers KJ, Chin CS, Rank DR, Eid JS, Turner SW.

Nucleic Acids Res. 2010 Aug;38(15):e159. doi: 10.1093/nar/gkq543. Epub 2010 Jun 22.

8.

EDGE: a centralized resource for the comparison, analysis, and distribution of toxicogenomic information.

Hayes KR, Vollrath AL, Zastrow GM, McMillan BJ, Craven M, Jovanovich S, Rank DR, Penn S, Walisser JA, Reddy JK, Thomas RS, Bradfield CA.

Mol Pharmacol. 2005 Apr;67(4):1360-8. Epub 2005 Jan 20.

PMID:
15662043
9.

Application of genomics to toxicology research.

Thomas RS, Rank DR, Penn SG, Zastrow GM, Hayes KR, Hu T, Pande K, Lewis M, Jovanovich SB, Bradfield CA.

Environ Health Perspect. 2002 Dec;110 Suppl 6:919-23. Review.

10.

Developing toxicologically predictive gene sets using cDNA microarrays and Bayesian classification.

Thomas RS, Rank DR, Penn SG, Craven MW, Drinkwater NR, Bradfield CA.

Methods Enzymol. 2002;357:198-205. No abstract available.

PMID:
12424911
11.

A conditional density error model for the statistical analysis of microarray data.

Love B, Rank DR, Penn SG, Jenkins DA, Thomas RS.

Bioinformatics. 2002 Aug;18(8):1064-72.

PMID:
12176829
12.

Sequence variation and phylogenetic history of the mouse Ahr gene.

Thomas RS, Penn SG, Holden K, Bradfield CA, Rank DR.

Pharmacogenetics. 2002 Mar;12(2):151-63.

PMID:
11875369
13.

Identification of toxicologically predictive gene sets using cDNA microarrays.

Thomas RS, Rank DR, Penn SG, Zastrow GM, Hayes KR, Pande K, Glover E, Silander T, Craven MW, Reddy JK, Jovanovich SB, Bradfield CA.

Mol Pharmacol. 2001 Dec;60(6):1189-94.

PMID:
11723225
14.

Sub-microliter DNA sequencing for capillary array electrophoresis.

Hadd AG, Goard MP, Rank DR, Jovanovich SB.

J Chromatogr A. 2000 Oct 13;894(1-2):191-201.

PMID:
11100862
15.

Mining the human genome using microarrays of open reading frames.

Penn SG, Rank DR, Hanzel DK, Barker DL.

Nat Genet. 2000 Nov;26(3):315-8.

PMID:
11062470
16.

Identifying multiple isolates through the comparison of genomic DNAs in a patient with infected hip prosthesis.

Perdreau-Remington F, Rank DR, Lopez FA, Goodmann SB.

West J Med. 1998 Feb;168(2):128-30. No abstract available.

17.

M13-102: a vector for facilitating construction and improving quality of M13 shotgun libraries.

Chen D, Johnson AF, Severin JM, Rank DR, Smith LM, Guilfoyle RA.

Gene. 1996 Jun 12;172(1):53-7.

PMID:
8654991
18.

Analyzing sequencing reactions from bacteriophage M13 by matrix-assisted laser desorption/ionization mass spectrometry.

Mouradian S, Rank DR, Smith LM.

Rapid Commun Mass Spectrom. 1996;10(12):1475-8.

PMID:
8885418
19.

Effect of the NADPH oxidase inhibitor apocynin on septic lung injury in guinea pigs.

Wang W, Suzuki Y, Tanigaki T, Rank DR, Raffin TA.

Am J Respir Crit Care Med. 1994 Nov;150(5 Pt 1):1449-52.

PMID:
7952574
20.

Time-temperature responses of tomato cells during high- and low-temperature inactivation.

Rank DR, Breidenbach RW, Fontana AJ, Hansen LD, Criddle RS.

Planta. 1991 Nov;185(4):576-82. doi: 10.1007/BF00202969.

PMID:
24186537
21.

Simultaneous measurement of metabolic heat rate, CO2 production, and O2 consumption by microcalorimetry.

Criddle RS, Fontana AJ, Rank DR, Paige D, Hansen LD, Breidenbach RW.

Anal Biochem. 1991 May 1;194(2):413-7.

PMID:
1907437

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