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Genomic impact of severe population decline in a nomadic songbird.

Crates R, Olah G, Adamski M, Aitken N, Banks S, Ingwersen D, Ranjard L, Rayner L, Stojanovic D, Suchan T, von Takach Dukai B, Heinsohn R.

PLoS One. 2019 Oct 24;14(10):e0223953. doi: 10.1371/journal.pone.0223953. eCollection 2019.


Biogeography of Soil Bacterial Networks along a Gradient of Cropping Intensity.

Karimi B, Dequiedt S, Terrat S, Jolivet C, Arrouays D, Wincker P, Cruaud C, Bispo A, Chemidlin Prévost-Bouré N, Ranjard L.

Sci Rep. 2019 Mar 7;9(1):3812. doi: 10.1038/s41598-019-40422-y.


Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect.

Plassart P, Prévost-Bouré NC, Uroz S, Dequiedt S, Stone D, Creamer R, Griffiths RI, Bailey MJ, Ranjard L, Lemanceau P.

Sci Rep. 2019 Jan 24;9(1):605. doi: 10.1038/s41598-018-36867-2.


Multi-locus DNA metabarcoding of zooplankton communities and scat reveal trophic interactions of a generalist predator.

Carroll EL, Gallego R, Sewell MA, Zeldis J, Ranjard L, Ross HA, Tooman LK, O'Rorke R, Newcomb RD, Constantine R.

Sci Rep. 2019 Jan 22;9(1):281. doi: 10.1038/s41598-018-36478-x.


HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations.

Wong TKF, Ranjard L, Lin Y, Rodrigo AG.

BMC Bioinformatics. 2018 Oct 22;19(1):389. doi: 10.1186/s12859-018-2424-7.


Biogeography of soil bacteria and archaea across France.

Karimi B, Terrat S, Dequiedt S, Saby NPA, Horrigue W, Lelièvre M, Nowak V, Jolivet C, Arrouays D, Wincker P, Cruaud C, Bispo A, Maron PA, Bouré NCP, Ranjard L.

Sci Adv. 2018 Jul 4;4(7):eaat1808. doi: 10.1126/sciadv.aat1808. eCollection 2018 Jul.


Tillage intensity and pasture in rotation effectively shape soil microbial communities at a landscape scale.

Le Guillou C, Chemidlin Prévost-Bouré N, Karimi B, Akkal-Corfini N, Dequiedt S, Nowak V, Terrat S, Menasseri-Aubry S, Viaud V, Maron PA, Ranjard L.

Microbiologyopen. 2019 Apr;8(4):e00676. doi: 10.1002/mbo3.676. Epub 2018 Jun 13.


Visualization and Quantification of Mesenchymal Cell Adipogenic Differentiation Potential with a Lineage Specific Marker.

Eom J, Feisst V, Ranjard L, Loomes K, Damani T, Jackson-Patel V, Locke M, Sheppard H, Narayan P, Dunbar PR.

J Vis Exp. 2018 Mar 31;(133). doi: 10.3791/57153.


High Microbial Diversity Promotes Soil Ecosystem Functioning.

Maron PA, Sarr A, Kaisermann A, Lévêque J, Mathieu O, Guigue J, Karimi B, Bernard L, Dequiedt S, Terrat S, Chabbi A, Ranjard L.

Appl Environ Microbiol. 2018 Apr 16;84(9). pii: e02738-17. doi: 10.1128/AEM.02738-17. Print 2018 May 1.


Correction: Mapping and predictive variations of soil bacterial richness across France.

Terrat S, Horrigue W, Dequiedt S, Saby NPA, Lelièvre M, Nowak V, Tripied J, Régnier T, Jolivet C, Arrouays D, Wincker P, Cruaud C, Karimi B, Bispo A, Maron PA, Prévost-Bouré NC, Ranjard L.

PLoS One. 2017 Dec 18;12(12):e0190128. doi: 10.1371/journal.pone.0190128. eCollection 2017.


Mapping and predictive variations of soil bacterial richness across France.

Terrat S, Horrigue W, Dequiedt S, Saby NPA, Lelièvre M, Nowak V, Tripied J, Régnier T, Jolivet C, Arrouays D, Wincker P, Cruaud C, Karimi B, Bispo A, Maron PA, Chemidlin Prévost-Bouré N, Ranjard L.

PLoS One. 2017 Oct 23;12(10):e0186766. doi: 10.1371/journal.pone.0186766. eCollection 2017. Erratum in: PLoS One. 2017 Dec 18;12 (12 ):e0190128.


Soil microbial diversity drives the priming effect along climate gradients: a case study in Madagascar.

Razanamalala K, Razafimbelo T, Maron PA, Ranjard L, Chemidlin N, Lelièvre M, Dequiedt S, Ramaroson VH, Marsden C, Becquer T, Trap J, Blanchart E, Bernard L.

ISME J. 2018 Feb;12(2):451-462. doi: 10.1038/ismej.2017.178. Epub 2017 Oct 17.


GenoSol Platform: A Logistic and Technical Platform for Conserving and Exploring Soil Microbial Diversity.

Dequiedt S, Maron PA, Ranjard L.

Methods Mol Biol. 2016;1399:55-60. doi: 10.1007/978-1-4939-3369-3_3.


A coordinated set of ecosystem research platforms open to international research in ecotoxicology, AnaEE-France.

Mougin C, Azam D, Caquet T, Cheviron N, Dequiedt S, Le Galliard JF, Guillaume O, Houot S, Lacroix G, Lafolie F, Maron PA, Michniewicz R, Pichot C, Ranjard L, Roy J, Zeller B, Clobert J, Chanzy A.

Environ Sci Pollut Res Int. 2015 Oct;22(20):16215-28. doi: 10.1007/s11356-015-5233-9. Epub 2015 Aug 29.


Land Use History Shifts In Situ Fungal and Bacterial Successions following Wheat Straw Input into the Soil.

Tardy V, Chabbi A, Charrier X, de Berranger C, Reignier T, Dequiedt S, Faivre-Primot C, Terrat S, Ranjard L, Maron PA.

PLoS One. 2015 Jun 23;10(6):e0130672. doi: 10.1371/journal.pone.0130672. eCollection 2015.


Integration over song classification replicates: song variant analysis in the hihi.

Ranjard L, Withers SJ, Brunton DH, Ross HA, Parsons S.

J Acoust Soc Am. 2015 May;137(5):2542-51. doi: 10.1121/1.4919329.


Contrasting spatial patterns and ecological attributes of soil bacterial and archaeal taxa across a landscape.

Constancias F, Saby NP, Terrat S, Dequiedt S, Horrigue W, Nowak V, Guillemin JP, Biju-Duval L, Chemidlin Prévost-Bouré N, Ranjard L.

Microbiologyopen. 2015 Jun;4(3):518-31. doi: 10.1002/mbo3.256. Epub 2015 Apr 28.


Mapping and determinism of soil microbial community distribution across an agricultural landscape.

Constancias F, Terrat S, Saby NP, Horrigue W, Villerd J, Guillemin JP, Biju-Duval L, Nowak V, Dequiedt S, Ranjard L, Chemidlin Prévost-Bouré N.

Microbiologyopen. 2015 Jun;4(3):505-17. doi: 10.1002/mbo3.255. Epub 2015 Apr 1.


Similar processes but different environmental filters for soil bacterial and fungal community composition turnover on a broad spatial scale.

Chemidlin Prévost-Bouré N, Dequiedt S, Thioulouse J, Lelièvre M, Saby NP, Jolivet C, Arrouays D, Plassart P, Lemanceau P, Ranjard L.

PLoS One. 2014 Nov 3;9(11):e111667. doi: 10.1371/journal.pone.0111667. eCollection 2014.


Improving soil bacterial taxa-area relationships assessment using DNA meta-barcoding.

Terrat S, Dequiedt S, Horrigue W, Lelievre M, Cruaud C, Saby NP, Jolivet C, Arrouays D, Maron PA, Ranjard L, Chemidlin Prévost-Bouré N.

Heredity (Edinb). 2015 May;114(5):468-75. doi: 10.1038/hdy.2014.91. Epub 2014 Oct 8.


Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition.

Terrat S, Plassart P, Bourgeois E, Ferreira S, Dequiedt S, Adele-Dit-De-Renseville N, Lemanceau P, Bispo A, Chabbi A, Maron PA, Ranjard L.

Microb Biotechnol. 2015 Jan;8(1):131-42. doi: 10.1111/1751-7915.12162. Epub 2014 Sep 4.


Modelling competition and dispersal in a statistical phylogeographic framework.

Ranjard L, Welch D, Paturel M, Guindon S.

Syst Biol. 2014 Sep;63(5):743-52. doi: 10.1093/sysbio/syu040. Epub 2014 Jun 13.


Low occurrence of Pseudomonas aeruginosa in agricultural soils with and without organic amendment.

Deredjian A, Colinon C, Hien E, Brothier E, Youenou B, Cournoyer B, Dequiedt S, Hartmann A, Jolivet C, Houot S, Ranjard L, Saby NP, Nazaret S.

Front Cell Infect Microbiol. 2014 Apr 29;4:53. doi: 10.3389/fcimb.2014.00053. eCollection 2014.


High‑throughput sequencing of amplicons for monitoring yeast biodiversity in must and during alcoholic fermentation.

David V, Terrat S, Herzine K, Claisse O, Rousseaux S, Tourdot-Maréchal R, Masneuf-Pomarede I, Ranjard L, Alexandre H.

J Ind Microbiol Biotechnol. 2014 May;41(5):811-21.


Stability of soil microbial structure and activity depends on microbial diversity.

Tardy V, Mathieu O, Lévêque J, Terrat S, Chabbi A, Lemanceau P, Ranjard L, Maron PA.

Environ Microbiol Rep. 2014 Apr;6(2):173-83. doi: 10.1111/1758-2229.12126. Epub 2013 Dec 2.


Detection and enumeration of Pseudomonas aeruginosa in soil and manure assessed by an ecfX qPCR assay.

Colinon C, Deredjian A, Hien E, Brothier E, Bouziri L, Cournoyer B, Hartman A, Henry S, Jolivet C, Ranjard L, Nazaret S.

J Appl Microbiol. 2013 Jun;114(6):1734-49. doi: 10.1111/jam.12189. Epub 2013 Apr 4.


Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity.

Ranjard L, Dequiedt S, Chemidlin Prévost-Bouré N, Thioulouse J, Saby NP, Lelievre M, Maron PA, Morin FE, Bispo A, Jolivet C, Arrouays D, Lemanceau P.

Nat Commun. 2013;4:1434. doi: 10.1038/ncomms2431.


Evaluation of the ISO standard 11063 DNA extraction procedure for assessing soil microbial abundance and community structure.

Plassart P, Terrat S, Thomson B, Griffiths R, Dequiedt S, Lelievre M, Regnier T, Nowak V, Bailey M, Lemanceau P, Bispo A, Chabbi A, Maron PA, Mougel C, Ranjard L.

PLoS One. 2012;7(9):e44279. doi: 10.1371/journal.pone.0044279. Epub 2012 Sep 11.


Analyses of sex and individual differences in vocalizations of Australasian gannets using a dynamic time warping algorithm.

Krull CR, Ranjard L, Landers TJ, Ismar SM, Matthews JL, Hauber ME.

J Acoust Soc Am. 2012 Aug;132(2):1189-98. doi: 10.1121/1.4734237.


Cell cycle gene networks are associated with melanoma prognosis.

Wang L, Hurley DG, Watkins W, Araki H, Tamada Y, Muthukaruppan A, Ranjard L, Derkac E, Imoto S, Miyano S, Crampin EJ, Print CG.

PLoS One. 2012;7(4):e34247. doi: 10.1371/journal.pone.0034247. Epub 2012 Apr 20.


Molecular biomass and MetaTaxogenomic assessment of soil microbial communities as influenced by soil DNA extraction procedure.

Terrat S, Christen R, Dequiedt S, Lelièvre M, Nowak V, Regnier T, Bachar D, Plassart P, Wincker P, Jolivet C, Bispo A, Lemanceau P, Maron PA, Mougel C, Ranjard L.

Microb Biotechnol. 2012 Jan;5(1):135-41. doi: 10.1111/j.1751-7915.2011.00307.x. Epub 2011 Oct 12.


Validation and application of a PCR primer set to quantify fungal communities in the soil environment by real-time quantitative PCR.

Chemidlin Prévost-Bouré N, Christen R, Dequiedt S, Mougel C, Lelièvre M, Jolivet C, Shahbazkia HR, Guillou L, Arrouays D, Ranjard L.

PLoS One. 2011;6(9):e24166. doi: 10.1371/journal.pone.0024166. Epub 2011 Sep 8.


Soil microbial diversity: Methodological strategy, spatial overview and functional interest.

Maron PA, Mougel C, Ranjard L.

C R Biol. 2011 May;334(5-6):403-11. doi: 10.1016/j.crvi.2010.12.003. Epub 2011 Feb 15. Review.


Contemporary and historical separation of transequatorial migration between genetically distinct seabird populations.

Rayner MJ, Hauber ME, Steeves TE, Lawrence HA, Thompson DR, Sagar PM, Bury SJ, Landers TJ, Phillips RA, Ranjard L, Shaffer SA.

Nat Commun. 2011;2:332. doi: 10.1038/ncomms1330.


Radioecological risk assessment of low selenium concentrations through genetic fingerprints and metabolic profiling of soil bacterial communities.

Colinon-Dupuich C, Février L, Ranjard L, Coppin F, Cournoyer B, Nazaret S.

Microb Ecol. 2011 Jul;62(1):14-24. doi: 10.1007/s00248-011-9831-x. Epub 2011 Mar 16.


Role of plant residues in determining temporal patterns of the activity, size, and structure of nitrate reducer communities in soil.

Chèneby D, Bru D, Pascault N, Maron PA, Ranjard L, Philippot L.

Appl Environ Microbiol. 2010 Nov;76(21):7136-43. doi: 10.1128/AEM.01497-10. Epub 2010 Sep 10.


Determinants of the distribution of nitrogen-cycling microbial communities at the landscape scale.

Bru D, Ramette A, Saby NP, Dequiedt S, Ranjard L, Jolivet C, Arrouays D, Philippot L.

ISME J. 2011 Mar;5(3):532-42. doi: 10.1038/ismej.2010.130. Epub 2010 Aug 12.


In situ dynamics of microbial communities during decomposition of wheat, rape, and alfalfa residues.

Pascault N, Cécillon L, Mathieu O, Hénault C, Sarr A, Lévêque J, Farcy P, Ranjard L, Maron PA.

Microb Ecol. 2010 Nov;60(4):816-28. doi: 10.1007/s00248-010-9705-7. Epub 2010 Jul 1.


In situ dynamics and spatial heterogeneity of soil bacterial communities under different crop residue management.

Pascault N, Nicolardot B, Bastian F, Thiébeau P, Ranjard L, Maron PA.

Microb Ecol. 2010 Aug;60(2):291-303. doi: 10.1007/s00248-010-9648-z. Epub 2010 Mar 30.


Contamination of soil by copper affects the dynamics, diversity, and activity of soil bacterial communities involved in wheat decomposition and carbon storage.

Bernard L, Maron PA, Mougel C, Nowak V, Lévêque J, Marol C, Balesdent J, Gibiat F, Ranjard L.

Appl Environ Microbiol. 2009 Dec;75(23):7565-9. doi: 10.1128/AEM.00616-09. Epub 2009 Oct 2.


Biogeographical patterns of soil bacterial communities.

Dequiedt S, Thioulouse J, Jolivet C, Saby NP, Lelievre M, Maron PA, Martin MP, Prévost-Bouré NC, Toutain B, Arrouays D, Lemanceau P, Ranjard L.

Environ Microbiol Rep. 2009 Aug;1(4):251-5. doi: 10.1111/j.1758-2229.2009.00040.x. Epub 2009 Jun 22.


Platform GenoSol: a new tool for conserving and exploring soil microbial diversity.

Ranjard L, Dequiedt S, Lelievre M, Maron PA, Mougel C, Morin F, Lemanceau P.

Environ Microbiol Rep. 2009 Apr;1(2):97-9. doi: 10.1111/j.1758-2229.2009.00023.x. Epub 2009 Mar 3. No abstract available.


Unsupervised bird song syllable classification using evolving neural networks.

Ranjard L, Ross HA.

J Acoust Soc Am. 2008 Jun;123(6):4358-68. doi: 10.1121/1.2903861.


Effect of primary mild stresses on resilience and resistance of the nitrate reducer community to a subsequent severe stress.

Philippot L, Cregut M, Chèneby D, Bressan M, Dequiet S, Martin-Laurent F, Ranjard L, Lemanceau P.

FEMS Microbiol Lett. 2008 Aug;285(1):51-7. doi: 10.1111/j.1574-6968.2008.01210.x. Epub 2008 May 26.


Copper dynamics and impact on microbial communities in soils of variable organic status.

Lejon DP, Martins JM, Lévêque J, Spadini L, Pascault N, Landry D, Milloux MJ, Nowak V, Chaussod R, Ranjard L.

Environ Sci Technol. 2008 Apr 15;42(8):2819-25.


Protein and DNA fingerprinting of a soil bacterial community inoculated into three different sterile soils.

Maron PA, Maitre M, Mercier A, Henri Lejon DP, Nowak V, Ranjard L.

Res Microbiol. 2008 May;159(4):231-6. doi: 10.1016/j.resmic.2008.03.004. Epub 2008 Apr 8.


Response of soil bacterial community structure to successive perturbations of different types and intensities.

Bressan M, Mougel C, Dequiedt S, Maron PA, Lemanceau P, Ranjard L.

Environ Microbiol. 2008 Aug;10(8):2184-7. doi: 10.1111/j.1462-2920.2008.01641.x. Epub 2008 May 6.


The dynamics of soil bacterial community structure in response to yearly repeated agricultural copper treatments.

Ranjard L, Nowak V, Echairi A, Faloya V, Chaussod R.

Res Microbiol. 2008 May;159(4):251-4. doi: 10.1016/j.resmic.2008.02.004. Epub 2008 Mar 13.


Fingerprinting and diversity of bacterial copA genes in response to soil types, soil organic status and copper contamination.

Lejon DP, Nowak V, Bouko S, Pascault N, Mougel C, Martins JM, Ranjard L.

FEMS Microbiol Ecol. 2007 Sep;61(3):424-37.

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