Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 50

1.

Single-Cell Proteomics Reveal that Quantitative Changes in Co-expressed Lineage-Specific Transcription Factors Determine Cell Fate.

Palii CG, Cheng Q, Gillespie MA, Shannon P, Mazurczyk M, Napolitani G, Price ND, Ranish JA, Morrissey E, Higgs DR, Brand M.

Cell Stem Cell. 2019 May 2;24(5):812-820.e5. doi: 10.1016/j.stem.2019.02.006. Epub 2019 Mar 14.

PMID:
30880026
2.

Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes.

Mashtalir N, D'Avino AR, Michel BC, Luo J, Pan J, Otto JE, Zullow HJ, McKenzie ZM, Kubiak RL, St Pierre R, Valencia AM, Poynter SJ, Cassel SH, Ranish JA, Kadoch C.

Cell. 2018 Nov 15;175(5):1272-1288.e20. doi: 10.1016/j.cell.2018.09.032. Epub 2018 Oct 18.

PMID:
30343899
3.

SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters.

Nakayama RT, Pulice JL, Valencia AM, McBride MJ, McKenzie ZM, Gillespie MA, Ku WL, Teng M, Cui K, Williams RT, Cassel SH, Qing H, Widmer CJ, Demetri GD, Irizarry RA, Zhao K, Ranish JA, Kadoch C.

Nat Genet. 2017 Nov;49(11):1613-1623. doi: 10.1038/ng.3958. Epub 2017 Sep 25.

4.

Mechanism for microbial population collapse in a fluctuating resource environment.

Turkarslan S, Raman AV, Thompson AW, Arens CE, Gillespie MA, von Netzer F, Hillesland KL, Stolyar S, López García de Lomana A, Reiss DJ, Gorman-Lewis D, Zane GM, Ranish JA, Wall JD, Stahl DA, Baliga NS.

Mol Syst Biol. 2017 Mar 20;13(3):919. doi: 10.15252/msb.20167058.

5.

Corrigendum: Quantitative proteomic analysis of purified yeast kinetochores identifies a PP1 regulatory subunit.

Akiyoshi B, Nelson CR, Ranish JA, Biggins S.

Genes Dev. 2016 Oct 15;30(20):2339. No abstract available.

6.

The Architecture of Trypanosoma brucei editosomes.

McDermott SM, Luo J, Carnes J, Ranish JA, Stuart K.

Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):E6476-E6485. Epub 2016 Oct 5.

7.

An LXR-NCOA5 gene regulatory complex directs inflammatory crosstalk-dependent repression of macrophage cholesterol efflux.

Gillespie MA, Gold ES, Ramsey SA, Podolsky I, Aderem A, Ranish JA.

EMBO J. 2015 May 5;34(9):1244-58. doi: 10.15252/embj.201489819. Epub 2015 Mar 9.

8.

Regulation of the Rhp26ERCC6/CSB chromatin remodeler by a novel conserved leucine latch motif.

Wang L, Limbo O, Fei J, Chen L, Kim B, Luo J, Chong J, Conaway RC, Conaway JW, Ranish JA, Kadonaga JT, Russell P, Wang D.

Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18566-71. doi: 10.1073/pnas.1420227112. Epub 2014 Dec 15.

9.

Glycocapture-assisted global quantitative proteomics (gagQP) reveals multiorgan responses in serum toxicoproteome.

Sun B, Utleg AG, Hu Z, Qin S, Keller A, Lorang C, Gray L, Brightman A, Lee D, Alexander VM, Ranish JA, Moritz RL, Hood L.

J Proteome Res. 2013 May 3;12(5):2034-44. doi: 10.1021/pr301178a. Epub 2013 Apr 11.

10.

The Mub1/Ubr2 ubiquitin ligase complex regulates the conserved Dsn1 kinetochore protein.

Akiyoshi B, Nelson CR, Duggan N, Ceto S, Ranish JA, Biggins S.

PLoS Genet. 2013;9(2):e1003216. doi: 10.1371/journal.pgen.1003216. Epub 2013 Feb 7.

11.

Phosphoregulation of Spc105 by Mps1 and PP1 regulates Bub1 localization to kinetochores.

London N, Ceto S, Ranish JA, Biggins S.

Curr Biol. 2012 May 22;22(10):900-6. doi: 10.1016/j.cub.2012.03.052. Epub 2012 Apr 19.

12.

Multiple sequence-specific DNA-binding proteins mediate estrogen receptor signaling through a tethering pathway.

Heldring N, Isaacs GD, Diehl AG, Sun M, Cheung E, Ranish JA, Kraus WL.

Mol Endocrinol. 2011 Apr;25(4):564-74. doi: 10.1210/me.2010-0425. Epub 2011 Feb 17.

13.

Tension directly stabilizes reconstituted kinetochore-microtubule attachments.

Akiyoshi B, Sarangapani KK, Powers AF, Nelson CR, Reichow SL, Arellano-Santoyo H, Gonen T, Ranish JA, Asbury CL, Biggins S.

Nature. 2010 Nov 25;468(7323):576-9. doi: 10.1038/nature09594.

14.

KLF3 regulates muscle-specific gene expression and synergizes with serum response factor on KLF binding sites.

Himeda CL, Ranish JA, Pearson RC, Crossley M, Hauschka SD.

Mol Cell Biol. 2010 Jul;30(14):3430-43. doi: 10.1128/MCB.00302-10. Epub 2010 Apr 19.

15.

p38-{gamma}-dependent gene silencing restricts entry into the myogenic differentiation program.

Gillespie MA, Le Grand F, Scimè A, Kuang S, von Maltzahn J, Seale V, Cuenda A, Ranish JA, Rudnicki MA.

J Cell Biol. 2009 Dec 28;187(7):991-1005. doi: 10.1083/jcb.200907037. Epub 2009 Dec 21.

16.

Quantitative proteomic analysis of purified yeast kinetochores identifies a PP1 regulatory subunit.

Akiyoshi B, Nelson CR, Ranish JA, Biggins S.

Genes Dev. 2009 Dec 15;23(24):2887-99. doi: 10.1101/gad.1865909. Erratum in: Genes Dev. 2016 Oct 15;30(20):2339.

17.

Dual role for the methyltransferase G9a in the maintenance of beta-globin gene transcription in adult erythroid cells.

Chaturvedi CP, Hosey AM, Palii C, Perez-Iratxeta C, Nakatani Y, Ranish JA, Dilworth FJ, Brand M.

Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18303-8. doi: 10.1073/pnas.0906769106. Epub 2009 Oct 12.

18.

Analysis of Ipl1-mediated phosphorylation of the Ndc80 kinetochore protein in Saccharomyces cerevisiae.

Akiyoshi B, Nelson CR, Ranish JA, Biggins S.

Genetics. 2009 Dec;183(4):1591-5. doi: 10.1534/genetics.109.109041. Epub 2009 Oct 12.

19.

Quantitative proteomics identifies oxidant-induced, AtMPK6-dependent changes in Arabidopsis thaliana protein profiles.

Miles GP, Samuel MA, Ranish JA, Donohoe SM, Sperrazzo GM, Ellis BE.

Plant Signal Behav. 2009 Jun;4(6):497-505. Epub 2009 Jun 17.

20.

Calcineurin/NFAT signaling is required for neuregulin-regulated Schwann cell differentiation.

Kao SC, Wu H, Xie J, Chang CP, Ranish JA, Graef IA, Crabtree GR.

Science. 2009 Jan 30;323(5914):651-4. doi: 10.1126/science.1166562.

21.

Quantitative proteomic identification of MAZ as a transcriptional regulator of muscle-specific genes in skeletal and cardiac myocytes.

Himeda CL, Ranish JA, Hauschka SD.

Mol Cell Biol. 2008 Oct;28(20):6521-35. doi: 10.1128/MCB.00306-08. Epub 2008 Aug 18.

22.

CTCF physically links cohesin to chromatin.

Rubio ED, Reiss DJ, Welcsh PL, Disteche CM, Filippova GN, Baliga NS, Aebersold R, Ranish JA, Krumm A.

Proc Natl Acad Sci U S A. 2008 Jun 17;105(24):8309-14. doi: 10.1073/pnas.0801273105. Epub 2008 Jun 11.

23.

Atbf1 is required for the Pit1 gene early activation.

Qi Y, Ranish JA, Zhu X, Krones A, Zhang J, Aebersold R, Rose DW, Rosenfeld MG, Carrière C.

Proc Natl Acad Sci U S A. 2008 Feb 19;105(7):2481-6. doi: 10.1073/pnas.0712196105. Epub 2008 Feb 13.

24.

The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes.

Kim B, Nesvizhskii AI, Rani PG, Hahn S, Aebersold R, Ranish JA.

Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16068-73. Epub 2007 Oct 3.

25.

Activator-mediated recruitment of the MLL2 methyltransferase complex to the beta-globin locus.

Demers C, Chaturvedi CP, Ranish JA, Juban G, Lai P, Morle F, Aebersold R, Dilworth FJ, Groudine M, Brand M.

Mol Cell. 2007 Aug 17;27(4):573-84.

26.

An essential switch in subunit composition of a chromatin remodeling complex during neural development.

Lessard J, Wu JI, Ranish JA, Wan M, Winslow MM, Staahl BT, Wu H, Aebersold R, Graef IA, Crabtree GR.

Neuron. 2007 Jul 19;55(2):201-15.

27.

Purification and characterization of cellular proteins associated with histone H4 tails.

Choi J, Kim B, Heo K, Kim K, Kim H, Zhan Y, Ranish JA, An W.

J Biol Chem. 2007 Jul 20;282(29):21024-31. Epub 2007 Jun 4.

28.
29.

Isolation and characterization of proteins associated with histone H3 tails in vivo.

Heo K, Kim B, Kim K, Choi J, Kim H, Zhan Y, Ranish JA, An W.

J Biol Chem. 2007 May 25;282(21):15476-83. Epub 2007 Apr 1.

30.

Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas.

King NL, Deutsch EW, Ranish JA, Nesvizhskii AI, Eddes JS, Mallick P, Eng J, Desiere F, Flory M, Martin DB, Kim B, Lee H, Raught B, Aebersold R.

Genome Biol. 2006;7(11):R106.

31.

Shotgun glycopeptide capture approach coupled with mass spectrometry for comprehensive glycoproteomics.

Sun B, Ranish JA, Utleg AG, White JT, Yan X, Lin B, Hood L.

Mol Cell Proteomics. 2007 Jan;6(1):141-9. Epub 2006 Oct 29.

32.

Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.

Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, Kregenow F, Lee H, Lin B, Martin D, Ranish JA, Rawlings DJ, Samelson LE, Shiio Y, Watts JD, Wollscheid B, Wright ME, Yan W, Yang L, Yi EC, Zhang H, Aebersold R.

Genome Biol. 2005;6(1):R9. Epub 2004 Dec 10.

33.

A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A.

Giglia-Mari G, Coin F, Ranish JA, Hoogstraten D, Theil A, Wijgers N, Jaspers NG, Raams A, Argentini M, van der Spek PJ, Botta E, Stefanini M, Egly JM, Aebersold R, Hoeijmakers JH, Vermeulen W.

Nat Genet. 2004 Jul;36(7):714-9. Epub 2004 Jun 27.

PMID:
15220921
34.

Identification of TFB5, a new component of general transcription and DNA repair factor IIH.

Ranish JA, Hahn S, Lu Y, Yi EC, Li XJ, Eng J, Aebersold R.

Nat Genet. 2004 Jul;36(7):707-13. Epub 2004 Jun 27.

PMID:
15220919
36.

Quantitative proteomic identification of six4 as the trex-binding factor in the muscle creatine kinase enhancer.

Himeda CL, Ranish JA, Angello JC, Maire P, Aebersold R, Hauschka SD.

Mol Cell Biol. 2004 Mar;24(5):2132-43.

38.

Dynamic changes in transcription factor complexes during erythroid differentiation revealed by quantitative proteomics.

Brand M, Ranish JA, Kummer NT, Hamilton J, Igarashi K, Francastel C, Chi TH, Crabtree GR, Aebersold R, Groudine M.

Nat Struct Mol Biol. 2004 Jan;11(1):73-80. Epub 2003 Dec 29.

PMID:
14718926
39.
40.

Abundance ratio-dependent proteomic analysis by mass spectrometry.

Griffin TJ, Lock CM, Li XJ, Patel A, Chervetsova I, Lee H, Wright ME, Ranish JA, Chen SS, Aebersold R.

Anal Chem. 2003 Feb 15;75(4):867-74.

PMID:
12622378
41.

The study of macromolecular complexes by quantitative proteomics.

Ranish JA, Yi EC, Leslie DM, Purvine SO, Goodlett DR, Eng J, Aebersold R.

Nat Genet. 2003 Mar;33(3):349-55. Epub 2003 Feb 18.

PMID:
12590263
42.

Quantitative proteome analysis by solid-phase isotope tagging and mass spectrometry.

Zhou H, Ranish JA, Watts JD, Aebersold R.

Nat Biotechnol. 2002 May;20(5):512-5.

PMID:
11981568
43.

Yeast nuclear extract contains two major forms of RNA polymerase II mediator complexes.

Liu Y, Ranish JA, Aebersold R, Hahn S.

J Biol Chem. 2001 Mar 9;276(10):7169-75.

44.

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.

Ideker T, Thorsson V, Ranish JA, Christmas R, Buhler J, Eng JK, Bumgarner R, Goodlett DR, Aebersold R, Hood L.

Science. 2001 May 4;292(5518):929-34.

45.

A transcription reinitiation intermediate that is stabilized by activator.

Yudkovsky N, Ranish JA, Hahn S.

Nature. 2000 Nov 9;408(6809):225-9.

PMID:
11089979
47.

Transcription: basal factors and activation.

Ranish JA, Hahn S.

Curr Opin Genet Dev. 1996 Apr;6(2):151-8. Review.

PMID:
8722170
49.

Isolation of two genes that encode subunits of the yeast transcription factor IIA.

Ranish JA, Lane WS, Hahn S.

Science. 1992 Feb 28;255(5048):1127-9.

PMID:
1546313
50.

Supplemental Content

Loading ...
Support Center