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Items: 28

1.

A feature selection strategy for gene expression time series experiments with hidden Markov models.

Cárdenas-Ovando RA, Fernández-Figueroa EA, Rueda-Zárate HA, Noguez J, Rangel-Escareño C.

PLoS One. 2019 Oct 10;14(10):e0223183. doi: 10.1371/journal.pone.0223183. eCollection 2019.

2.

SERPINA9 and SERPINB2: Novel Cartilage Lineage Differentiation Markers of Human Mesenchymal Stem Cells with Kartogenin.

Granados-Montiel J, Cruz-Lemini M, Rangel-Escareño C, Martinez-Nava G, Landa-Solis C, Gomez-Garcia R, Lopez-Reyes A, Espinosa-Gutierrez A, Ibarra C.

Cartilage. 2018 Oct 29:1947603518809403. doi: 10.1177/1947603518809403. [Epub ahead of print]

PMID:
30373376
3.

Deregulated MicroRNAs in Cancer-Associated Fibroblasts from Front Tumor Tissues of Lung Adenocarcinoma as Potential Predictors of Tumor Promotion.

Negrete-Garcia MC, Ramírez-Rodriguez SL, Rangel-Escareño C, Muñoz-Montero S, Kelly-García J, Vázquez-Manríquez ME, Santillán P, Ramírez MM, Ramírez-Martínez G, Ramírez-Venegas A, Ortiz-Quintero B.

Tohoku J Exp Med. 2018 Oct;246(2):107-120. doi: 10.1620/tjem.246.107.

4.

A trypsin-based method for isolating leukocytes from human choriodecidua suitable for immunophenotyping and transcriptome studies.

MacDonald-Ramos K, Arenas-Hernandez M, Mancilla-Herrera I, Rangel-Escareño C, Vega-Sanchez R.

Immunobiology. 2019 Jan;224(1):177-181. doi: 10.1016/j.imbio.2018.09.001. Epub 2018 Sep 22.

5.

A meta-analysis of transcriptome datasets characterizes malignant transformation from melanocytes and nevi to melanoma.

Ortega-Bernal D, La Rosa CHG, Arechaga-Ocampo E, Alvarez-Avitia MA, Moreno NS, Rangel-Escareño C.

Oncol Lett. 2018 Aug;16(2):1899-1911. doi: 10.3892/ol.2018.8861. Epub 2018 May 31.

6.

Gene expression changes by high-polyphenols cocoa powder intake: a randomized crossover clinical study.

Barrera-Reyes PK, Hernández-Ramírez N, Cortés J, Poquet L, Redeuil K, Rangel-Escareño C, Kussmann M, Silva-Zolezzi I, Tejero ME.

Eur J Nutr. 2019 Aug;58(5):1887-1898. doi: 10.1007/s00394-018-1736-8. Epub 2018 Jun 8.

7.

Altered DNA methylation in liver and adipose tissues derived from individuals with obesity and type 2 diabetes.

Barajas-Olmos F, Centeno-Cruz F, Zerrweck C, Imaz-Rosshandler I, Martínez-Hernández A, Cordova EJ, Rangel-Escareño C, Gálvez F, Castillo A, Maydón H, Campos F, Maldonado-Pintado DG, Orozco L.

BMC Med Genet. 2018 Feb 21;19(1):28. doi: 10.1186/s12881-018-0542-8.

8.

Choriodecidual leukocytes display a unique gene expression signature in spontaneous labor at term.

Arenas-Hernandez M, Gomez-Lopez N, Garcia-Flores V, Rangel-Escareño C, Alvarez-Salas LM, Martinez-Acuña N, Vazquez-Perez JA, Vega-Sanchez R.

Genes Immun. 2019 Jan;20(1):56-68. doi: 10.1038/s41435-017-0010-z. Epub 2018 Jan 24.

9.

Identification of microRNAs in human circulating monocytes of postmenopausal osteoporotic Mexican-Mestizo women: A pilot study.

Jiménez-Ortega RF, Ramírez-Salazar EG, Parra-Torres AY, Muñoz-Montero SA, Rangel-Escareňo C, Salido-Guadarrama I, Rodriguez-Dorantes M, Quiterio M, Salmerón J, Velázquez-Cruz R.

Exp Ther Med. 2017 Dec;14(6):5464-5472. doi: 10.3892/etm.2017.5260. Epub 2017 Oct 3.

10.

Differential gene expression profiles according to the Association for the Study of Lung Cancer/American Thoracic Society/European Respiratory Society histopathological classification in lung adenocarcinoma subtypes.

Molina-Romero C, Rangel-Escareño C, Ortega-Gómez A, Alanis-Funes GJ, Avilés-Salas A, Avila-Moreno F, Mercado GE, Cardona AF, Hidalgo-Miranda A, Arrieta O.

Hum Pathol. 2017 Aug;66:188-199. doi: 10.1016/j.humpath.2017.06.002. Epub 2017 Jun 9.

PMID:
28603066
11.

A computational toxicogenomics approach identifies a list of highly hepatotoxic compounds from a large microarray database.

Rueda-Zárate HA, Imaz-Rosshandler I, Cárdenas-Ovando RA, Castillo-Fernández JE, Noguez-Monroy J, Rangel-Escareño C.

PLoS One. 2017 Apr 27;12(4):e0176284. doi: 10.1371/journal.pone.0176284. eCollection 2017.

12.

A transcriptome-based model of central memory CD4 T cell death in HIV infection.

Olvera-García G, Aguilar-García T, Gutiérrez-Jasso F, Imaz-Rosshandler I, Rangel-Escareño C, Orozco L, Aguilar-Delfín I, Vázquez-Pérez JA, Zúñiga J, Pérez-Patrigeon S, Espinosa E.

BMC Genomics. 2016 Nov 22;17(1):956.

13.

Gene-expression profiles in lung adenocarcinomas related to chronic wood smoke or tobacco exposure.

Ortega-Gómez A, Rangel-Escareño C, Molina-Romero C, Macedo-Pérez EO, Avilés-Salas A, Lara-García A, Alanis-Funes G, Rodríguez-Bautista R, Hidalgo-Miranda A, Arrieta O.

Respir Res. 2016 Apr 20;17:42. doi: 10.1186/s12931-016-0346-3.

14.

Urinary microRNA-based signature improves accuracy of detection of clinically relevant prostate cancer within the prostate-specific antigen grey zone.

Salido-Guadarrama AI, Morales-Montor JG, Rangel-Escareño C, Langley E, Peralta-Zaragoza O, Cruz Colin JL, Rodriguez-Dorantes M.

Mol Med Rep. 2016 Jun;13(6):4549-60. doi: 10.3892/mmr.2016.5095. Epub 2016 Apr 8.

15.

Down-Regulation of TLR and JAK/STAT Pathway Genes Is Associated with Diffuse Cutaneous Leishmaniasis: A Gene Expression Analysis in NK Cells from Patients Infected with Leishmania mexicana.

Fernández-Figueroa EA, Imaz-Rosshandler I, Castillo-Fernández JE, Miranda-Ortíz H, Fernández-López JC, Becker I, Rangel-Escareño C.

PLoS Negl Trop Dis. 2016 Mar 31;10(3):e0004570. doi: 10.1371/journal.pntd.0004570. eCollection 2016 Mar. Erratum in: PLoS Negl Trop Dis. 2016 Apr;10(4):e0004666.

16.

On Predicting lung cancer subtypes using 'omic' data from tumor and tumor-adjacent histologically-normal tissue.

Pineda AL, Ogoe HA, Balasubramanian JB, Rangel Escareño C, Visweswaran S, Herman JG, Gopalakrishnan V.

BMC Cancer. 2016 Mar 4;16:184. doi: 10.1186/s12885-016-2223-3.

17.

Cigarette Smoke Enhances the Expression of Profibrotic Molecules in Alveolar Epithelial Cells.

Checa M, Hagood JS, Velazquez-Cruz R, Ruiz V, García-De-Alba C, Rangel-Escareño C, Urrea F, Becerril C, Montaño M, García-Trejo S, Cisneros Lira J, Aquino-Gálvez A, Pardo A, Selman M.

PLoS One. 2016 Mar 2;11(3):e0150383. doi: 10.1371/journal.pone.0150383. eCollection 2016.

18.

CEMP1 Induces Transformation in Human Gingival Fibroblasts.

Bermúdez M, Imaz-Rosshandler I, Rangel-Escareño C, Zeichner-David M, Arzate H, Mercado-Celis GE.

PLoS One. 2015 May 26;10(5):e0127286. doi: 10.1371/journal.pone.0127286. eCollection 2015.

19.

PPARα via HNF4α regulates the expression of genes encoding hepatic amino acid catabolizing enzymes to maintain metabolic homeostasis.

Contreras AV, Rangel-Escareño C, Torres N, Alemán-Escondrillas G, Ortiz V, Noriega LG, Torre-Villalvazo I, Granados O, Velázquez-Villegas LA, Tobon-Cornejo S, González-Hirschfeld D, Recillas-Targa F, Tejero-Barrera E, Gonzalez FJ, Tovar AR.

Genes Nutr. 2015 Mar;10(2):452. doi: 10.1007/s12263-014-0452-0. Epub 2015 Jan 10.

20.

Exploring the distribution of genetic markers of pharmacogenomics relevance in Brazilian and Mexican populations.

Bonifaz-Peña V, Contreras AV, Struchiner CJ, Roela RA, Furuya-Mazzotti TK, Chammas R, Rangel-Escareño C, Uribe-Figueroa L, Gómez-Vázquez MJ, McLeod HL, Hidalgo-Miranda A, Parra EJ, Fernández-López JC, Suarez-Kurtz G.

PLoS One. 2014 Nov 24;9(11):e112640. doi: 10.1371/journal.pone.0112640. eCollection 2014. Erratum in: PLoS One. 2015;10(3):e0122161.

21.

Genetic Diversity of Tick-Borne Rickettsial Pathogens; Insights Gained from Distant Strains.

Pierlé SA, Rosshandler II, Kerudin AA, Sambono J, Lew-Tabor A, Rolls P, Rangel-Escareño C, Brayton KA.

Pathogens. 2014 Jan 14;3(1):57-72.

22.

Neurocysticercosis: the effectiveness of the cysticidal treatment could be influenced by the host immunity.

Cárdenas G, Fragoso G, Rosetti M, Uribe-Figueroa L, Rangel-Escareño C, Saenz B, Hernández M, Sciutto E, Fleury A.

Med Microbiol Immunol. 2014 Dec;203(6):373-81. doi: 10.1007/s00430-014-0345-2. Epub 2014 Jun 24.

PMID:
24957954
23.

Cysticerci drive dendritic cells to promote in vitro and in vivo Tregs differentiation.

Adalid-Peralta L, Arce-Sillas A, Fragoso G, Cárdenas G, Rosetti M, Casanova-Hernández D, Rangel-Escareño C, Uribe-Figueroa L, Fleury A, Sciutto E.

Clin Dev Immunol. 2013;2013:981468. doi: 10.1155/2013/981468. Epub 2013 May 23.

24.

Comparison of gene expression profiles between pansensitive and multidrug-resistant strains of Mycobacterium tuberculosis.

Peñuelas-Urquides K, González-Escalante L, Villarreal-Treviño L, Silva-Ramírez B, Gutiérrez-Fuentes DJ, Mojica-Espinosa R, Rangel-Escareño C, Uribe-Figueroa L, Molina-Salinas GM, Dávila-Velderrain J, Castorena-Torres F, Bermúdez de León M, Said-Fernández S.

Curr Microbiol. 2013 Sep;67(3):362-71. doi: 10.1007/s00284-013-0376-8. Epub 2013 May 7.

PMID:
23649743
25.

Sequence analysis of mutations and translocations across breast cancer subtypes.

Banerji S, Cibulskis K, Rangel-Escareno C, Brown KK, Carter SL, Frederick AM, Lawrence MS, Sivachenko AY, Sougnez C, Zou L, Cortes ML, Fernandez-Lopez JC, Peng S, Ardlie KG, Auclair D, Bautista-Piña V, Duke F, Francis J, Jung J, Maffuz-Aziz A, Onofrio RC, Parkin M, Pho NH, Quintanar-Jurado V, Ramos AH, Rebollar-Vega R, Rodriguez-Cuevas S, Romero-Cordoba SL, Schumacher SE, Stransky N, Thompson KM, Uribe-Figueroa L, Baselga J, Beroukhim R, Polyak K, Sgroi DC, Richardson AL, Jimenez-Sanchez G, Lander ES, Gabriel SB, Garraway LA, Golub TR, Melendez-Zajgla J, Toker A, Getz G, Hidalgo-Miranda A, Meyerson M.

Nature. 2012 Jun 20;486(7403):405-9. doi: 10.1038/nature11154.

26.

Disease severity in patients infected with Leishmania mexicana relates to IL-1β.

Fernández-Figueroa EA, Rangel-Escareño C, Espinosa-Mateos V, Carrillo-Sánchez K, Salaiza-Suazo N, Carrada-Figueroa G, March-Mifsut S, Becker I.

PLoS Negl Trop Dis. 2012;6(5):e1533. doi: 10.1371/journal.pntd.0001533. Epub 2012 May 22.

27.

Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing.

Lohr JG, Stojanov P, Lawrence MS, Auclair D, Chapuy B, Sougnez C, Cruz-Gordillo P, Knoechel B, Asmann YW, Slager SL, Novak AJ, Dogan A, Ansell SM, Link BK, Zou L, Gould J, Saksena G, Stransky N, Rangel-Escareño C, Fernandez-Lopez JC, Hidalgo-Miranda A, Melendez-Zajgla J, Hernández-Lemus E, Schwarz-Cruz y Celis A, Imaz-Rosshandler I, Ojesina AI, Jung J, Pedamallu CS, Lander ES, Habermann TM, Cerhan JR, Shipp MA, Getz G, Golub TR.

Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3879-84. doi: 10.1073/pnas.1121343109. Epub 2012 Feb 17.

28.

The mutational landscape of head and neck squamous cell carcinoma.

Stransky N, Egloff AM, Tward AD, Kostic AD, Cibulskis K, Sivachenko A, Kryukov GV, Lawrence MS, Sougnez C, McKenna A, Shefler E, Ramos AH, Stojanov P, Carter SL, Voet D, Cortés ML, Auclair D, Berger MF, Saksena G, Guiducci C, Onofrio RC, Parkin M, Romkes M, Weissfeld JL, Seethala RR, Wang L, Rangel-Escareño C, Fernandez-Lopez JC, Hidalgo-Miranda A, Melendez-Zajgla J, Winckler W, Ardlie K, Gabriel SB, Meyerson M, Lander ES, Getz G, Golub TR, Garraway LA, Grandis JR.

Science. 2011 Aug 26;333(6046):1157-60. doi: 10.1126/science.1208130. Epub 2011 Jul 28.

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