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Items: 1 to 50 of 96

1.

Profiling of Pluripotency Factors in Single Cells and Early Embryos.

Hainer SJ, Bošković A, McCannell KN, Rando OJ, Fazzio TG.

Cell. 2019 May 16;177(5):1319-1329.e11. doi: 10.1016/j.cell.2019.03.014. Epub 2019 Apr 4.

PMID:
30955888
2.

tRNA Genes Affect Chromosome Structure and Function via Local Effects.

Hamdani O, Dhillon N, Hsieh TS, Fujita T, Ocampo J, Kirkland JG, Lawrimore J, Kobayashi TJ, Friedman B, Fulton D, Wu KY, Chereji RV, Oki M, Bloom K, Clark DJ, Rando OJ, Kamakaka RT.

Mol Cell Biol. 2019 Apr 2;39(8). pii: e00432-18. doi: 10.1128/MCB.00432-18. Print 2019 Apr 15.

3.

Condensin-Dependent Chromatin Compaction Represses Transcription Globally during Quiescence.

Swygert SG, Kim S, Wu X, Fu T, Hsieh TH, Rando OJ, Eisenman RN, Shendure J, McKnight JN, Tsukiyama T.

Mol Cell. 2019 Feb 7;73(3):533-546.e4. doi: 10.1016/j.molcel.2018.11.020. Epub 2018 Dec 27.

PMID:
30595435
4.

Paternal Exercise Improves Glucose Metabolism in Adult Offspring.

Stanford KI, Rasmussen M, Baer LA, Lehnig AC, Rowland LA, White JD, So K, De Sousa-Coelho AL, Hirshman MF, Patti ME, Rando OJ, Goodyear LJ.

Diabetes. 2018 Dec;67(12):2530-2540. doi: 10.2337/db18-0667. Epub 2018 Oct 21.

5.

Transgenerational Epigenetic Inheritance.

Bošković A, Rando OJ.

Annu Rev Genet. 2018 Nov 23;52:21-41. doi: 10.1146/annurev-genet-120417-031404. Epub 2018 Aug 30.

PMID:
30160987
6.

Small RNAs Gained during Epididymal Transit of Sperm Are Essential for Embryonic Development in Mice.

Conine CC, Sun F, Song L, Rivera-Pérez JA, Rando OJ.

Dev Cell. 2018 Aug 20;46(4):470-480.e3. doi: 10.1016/j.devcel.2018.06.024. Epub 2018 Jul 26.

PMID:
30057276
7.

Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm.

Sharma U, Sun F, Conine CC, Reichholf B, Kukreja S, Herzog VA, Ameres SL, Rando OJ.

Dev Cell. 2018 Aug 20;46(4):481-494.e6. doi: 10.1016/j.devcel.2018.06.023. Epub 2018 Jul 26.

PMID:
30057273
8.

Effects of Larval Density on Gene Regulation in Caenorhabditis elegans During Routine L1 Synchronization.

Chan IL, Rando OJ, Conine CC.

G3 (Bethesda). 2018 May 4;8(5):1787-1793. doi: 10.1534/g3.118.200056.

9.

Rlim-Dependent and -Independent Pathways for X Chromosome Inactivation in Female ESCs.

Wang F, McCannell KN, Bošković A, Zhu X, Shin J, Yu J, Gallant J, Byron M, Lawrence JB, Zhu LJ, Jones SN, Rando OJ, Fazzio TG, Bach I.

Cell Rep. 2017 Dec 26;21(13):3691-3699. doi: 10.1016/j.celrep.2017.12.004.

10.

Transcriptome-wide Analysis of Roles for tRNA Modifications in Translational Regulation.

Chou HJ, Donnard E, Gustafsson HT, Garber M, Rando OJ.

Mol Cell. 2017 Dec 7;68(5):978-992.e4. doi: 10.1016/j.molcel.2017.11.002. Epub 2017 Nov 30.

11.

A synthetic biology approach to probing nucleosome symmetry.

Ichikawa Y, Connelly CF, Appleboim A, Miller TC, Jacobi H, Abshiru NA, Chou HJ, Chen Y, Sharma U, Zheng Y, Thomas PM, Chen HV, Bajaj V, Müller CW, Kelleher NL, Friedman N, Bolon DN, Rando OJ, Kaufman PD.

Elife. 2017 Sep 12;6. pii: e28836. doi: 10.7554/eLife.28836.

12.

LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo.

Jachowicz JW, Bing X, Pontabry J, Bošković A, Rando OJ, Torres-Padilla ME.

Nat Genet. 2017 Oct;49(10):1502-1510. doi: 10.1038/ng.3945. Epub 2017 Aug 28.

PMID:
28846101
13.

Metabolic Inputs into the Epigenome.

Sharma U, Rando OJ.

Cell Metab. 2017 Mar 7;25(3):544-558. doi: 10.1016/j.cmet.2017.02.003. Review.

14.

Paternal nicotine exposure alters hepatic xenobiotic metabolism in offspring.

Vallaster MP, Kukreja S, Bing XY, Ngolab J, Zhao-Shea R, Gardner PD, Tapper AR, Rando OJ.

Elife. 2017 Feb 14;6. pii: e24771. doi: 10.7554/eLife.24771.

15.

DNA methylation directs genomic localization of Mbd2 and Mbd3 in embryonic stem cells.

Hainer SJ, McCannell KN, Yu J, Ee LS, Zhu LJ, Rando OJ, Fazzio TG.

Elife. 2016 Nov 16;5. pii: e21964. doi: 10.7554/eLife.21964.

16.

Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome.

Hsieh TS, Fudenberg G, Goloborodko A, Rando OJ.

Nat Methods. 2016 Dec;13(12):1009-1011. doi: 10.1038/nmeth.4025. Epub 2016 Oct 10.

PMID:
27723753
17.

Regulation of X-linked gene expression during early mouse development by Rlim.

Wang F, Shin J, Shea JM, Yu J, Bošković A, Byron M, Zhu X, Shalek AK, Regev A, Lawrence JB, Torres EM, Zhu LJ, Rando OJ, Bach I.

Elife. 2016 Sep 19;5. pii: e19127. doi: 10.7554/eLife.19127.

18.

Dynamics of Nucleosome Positioning Maturation following Genomic Replication.

Vasseur P, Tonazzini S, Ziane R, Camasses A, Rando OJ, Radman-Livaja M.

Cell Rep. 2016 Sep 6;16(10):2651-2665. doi: 10.1016/j.celrep.2016.07.083. Epub 2016 Aug 25.

19.

Intergenerational Transfer of Epigenetic Information in Sperm.

Rando OJ.

Cold Spring Harb Perspect Med. 2016 May 2;6(5). pii: a022988. doi: 10.1101/cshperspect.a022988. Review.

20.

Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.

Sharma U, Conine CC, Shea JM, Boskovic A, Derr AG, Bing XY, Belleannee C, Kucukural A, Serra RW, Sun F, Song L, Carone BR, Ricci EP, Li XZ, Fauquier L, Moore MJ, Sullivan R, Mello CC, Garber M, Rando OJ.

Science. 2016 Jan 22;351(6271):391-396. doi: 10.1126/science.aad6780. Epub 2015 Dec 31.

21.

Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome.

Shea JM, Serra RW, Carone BR, Shulha HP, Kucukural A, Ziller MJ, Vallaster MP, Gu H, Tapper AR, Gardner PD, Meissner A, Garber M, Rando OJ.

Dev Cell. 2015 Dec 21;35(6):750-8. doi: 10.1016/j.devcel.2015.11.024.

22.

Chromatin Dynamics and the RNA Exosome Function in Concert to Regulate Transcriptional Homeostasis.

Rege M, Subramanian V, Zhu C, Hsieh TH, Weiner A, Friedman N, Clauder-Münster S, Steinmetz LM, Rando OJ, Boyer LA, Peterson CL.

Cell Rep. 2015 Nov 24;13(8):1610-22. doi: 10.1016/j.celrep.2015.10.030. Epub 2015 Nov 12.

23.

R loops regulate promoter-proximal chromatin architecture and cellular differentiation.

Chen PB, Chen HV, Acharya D, Rando OJ, Fazzio TG.

Nat Struct Mol Biol. 2015 Dec;22(12):999-1007. doi: 10.1038/nsmb.3122. Epub 2015 Nov 9.

24.

Epigenomics and the structure of the living genome.

Friedman N, Rando OJ.

Genome Res. 2015 Oct;25(10):1482-90. doi: 10.1101/gr.190165.115. Review.

25.

Comparative Genomics Reveals Chd1 as a Determinant of Nucleosome Spacing in Vivo.

Hughes AL, Rando OJ.

G3 (Bethesda). 2015 Jul 14;5(9):1889-97. doi: 10.1534/g3.115.020271.

26.

Corrigendum: Increased CRF signalling in a ventral tegmental area-interpeduncular nucleus-medial habenula circuit induces anxiety during nicotine withdrawal.

Zhao-Shea R, DeGroot SR, Liu L, Vallaster M, Pang X, Su Q, Gao G, Rando OJ, Martin GE, George O, Gardner PD, Tapper AR.

Nat Commun. 2015 Jul 2;6:7625. doi: 10.1038/ncomms8625. No abstract available.

PMID:
26133887
27.

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C.

Hsieh TH, Weiner A, Lajoie B, Dekker J, Friedman N, Rando OJ.

Cell. 2015 Jul 2;162(1):108-19. doi: 10.1016/j.cell.2015.05.048. Epub 2015 Jun 25.

28.

Increased CRF signalling in a ventral tegmental area-interpeduncular nucleus-medial habenula circuit induces anxiety during nicotine withdrawal.

Zhao-Shea R, DeGroot SR, Liu L, Vallaster M, Pang X, Su Q, Gao G, Rando OJ, Martin GE, George O, Gardner PD, Tapper AR.

Nat Commun. 2015 Apr 21;6:6770. doi: 10.1038/ncomms7770. Erratum in: Nat Commun. 2015;6:7625.

29.

I'm eating for two: parental dietary effects on offspring metabolism.

Rando OJ, Simmons RA.

Cell. 2015 Mar 26;161(1):93-105. doi: 10.1016/j.cell.2015.02.021. Review.

30.

High-resolution chromatin dynamics during a yeast stress response.

Weiner A, Hsieh TH, Appleboim A, Chen HV, Rahat A, Amit I, Rando OJ, Friedman N.

Mol Cell. 2015 Apr 16;58(2):371-86. doi: 10.1016/j.molcel.2015.02.002. Epub 2015 Mar 19.

31.

Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF.

Hainer SJ, Gu W, Carone BR, Landry BD, Rando OJ, Mello CC, Fazzio TG.

Genes Dev. 2015 Feb 15;29(4):362-78. doi: 10.1101/gad.253534.114.

32.

A system for genome-wide histone variant dynamics in ES cells reveals dynamic MacroH2A2 replacement at promoters.

Yildirim O, Hung JH, Cedeno RJ, Weng Z, Lengner CJ, Rando OJ.

PLoS Genet. 2014 Aug 7;10(8):e1004515. doi: 10.1371/journal.pgen.1004515. eCollection 2014 Aug.

33.

High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm.

Carone BR, Hung JH, Hainer SJ, Chou MT, Carone DM, Weng Z, Fazzio TG, Rando OJ.

Dev Cell. 2014 Jul 14;30(1):11-22. doi: 10.1016/j.devcel.2014.05.024. Epub 2014 Jul 3.

34.

Father-son chats: inheriting stress through sperm RNA.

Sharma U, Rando OJ.

Cell Metab. 2014 Jun 3;19(6):894-5. doi: 10.1016/j.cmet.2014.05.015.

35.

Mechanisms underlying nucleosome positioning in vivo.

Hughes AL, Rando OJ.

Annu Rev Biophys. 2014;43:41-63. doi: 10.1146/annurev-biophys-051013-023114. Review.

PMID:
24702039
36.

Feedback control of Set1 protein levels is important for proper H3K4 methylation patterns.

Soares LM, Radman-Livaja M, Lin SG, Rando OJ, Buratowski S.

Cell Rep. 2014 Mar 27;6(6):961-972. doi: 10.1016/j.celrep.2014.02.017. Epub 2014 Mar 6.

37.

A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme.

Watanabe S, Radman-Livaja M, Rando OJ, Peterson CL.

Science. 2013 Apr 12;340(6129):195-9. doi: 10.1126/science.1229758.

38.

Toward a unified physical model of nucleosome patterns flanking transcription start sites.

Möbius W, Osberg B, Tsankov AM, Rando OJ, Gerland U.

Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5719-24. doi: 10.1073/pnas.1214048110. Epub 2013 Mar 18.

39.

Painting by numbers: increasing the parts list for chromatin domains.

Chen HV, Rando OJ.

Mol Cell. 2013 Feb 21;49(4):620-1. doi: 10.1016/j.molcel.2013.02.007.

40.

Fetal programming and environmental exposures: implications for prenatal care and preterm birth.

Schug TT, Erlebacher A, Leibowitz S, Ma L, Muglia LJ, Rando OJ, Rogers JM, Romero R, vom Saal FS, Wise DL.

Ann N Y Acad Sci. 2012 Dec;1276:37-46. doi: 10.1111/nyas.12003.

41.

Daddy issues: paternal effects on phenotype.

Rando OJ.

Cell. 2012 Nov 9;151(4):702-708. doi: 10.1016/j.cell.2012.10.020.

42.

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.

Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y, Rando OJ, Birney E, Myers RM, Noble WS, Snyder M, Weng Z.

Genome Res. 2012 Sep;22(9):1798-812. doi: 10.1101/gr.139105.112.

43.

Systematic dissection of roles for chromatin regulators in a yeast stress response.

Weiner A, Chen HV, Liu CL, Rahat A, Klien A, Soares L, Gudipati M, Pfeffner J, Regev A, Buratowski S, Pleiss JA, Friedman N, Rando OJ.

PLoS Biol. 2012;10(7):e1001369. doi: 10.1371/journal.pbio.1001369. Epub 2012 Jul 31.

44.

A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern.

Hughes AL, Jin Y, Rando OJ, Struhl K.

Mol Cell. 2012 Oct 12;48(1):5-15. doi: 10.1016/j.molcel.2012.07.003. Epub 2012 Aug 9.

45.

A key role for Chd1 in histone H3 dynamics at the 3' ends of long genes in yeast.

Radman-Livaja M, Quan TK, Valenzuela L, Armstrong JA, van Welsem T, Kim T, Lee LJ, Buratowski S, van Leeuwen F, Rando OJ, Hartzog GA.

PLoS Genet. 2012;8(7):e1002811. doi: 10.1371/journal.pgen.1002811. Epub 2012 Jul 12.

46.

Rewriting the epigenome.

Carone BR, Rando OJ.

Cell. 2012 Jun 22;149(7):1422-3. doi: 10.1016/j.cell.2012.06.008.

47.

NURDs are required for diversity.

Fazzio TG, Rando OJ.

EMBO J. 2012 May 11;31(14):3036-7. doi: 10.1038/emboj.2012.137. Review. No abstract available.

48.

Genome-wide identification and characterization of replication origins by deep sequencing.

Xu J, Yanagisawa Y, Tsankov AM, Hart C, Aoki K, Kommajosyula N, Steinmann KE, Bochicchio J, Russ C, Regev A, Rando OJ, Nusbaum C, Niki H, Milos P, Weng Z, Rhind N.

Genome Biol. 2012 Apr 24;13(4):R27. doi: 10.1186/gb-2012-13-4-r27.

49.

Combinatorial complexity in chromatin structure and function: revisiting the histone code.

Rando OJ.

Curr Opin Genet Dev. 2012 Apr;22(2):148-55. doi: 10.1016/j.gde.2012.02.013. Epub 2012 Mar 20. Review.

50.

Chromatin and transcription in yeast.

Rando OJ, Winston F.

Genetics. 2012 Feb;190(2):351-87. doi: 10.1534/genetics.111.132266. Review.

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