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Items: 30

1.

Evolutionarily informed deep learning methods for predicting relative transcript abundance from DNA sequence.

Washburn JD, Mejia-Guerra MK, Ramstein G, Kremling KA, Valluru R, Buckler ES, Wang H.

Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5542-5549. doi: 10.1073/pnas.1814551116. Epub 2019 Mar 6.

2.

Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample.

Ramstein GP, Casler MD.

G3 (Bethesda). 2019 Mar 7;9(3):789-805. doi: 10.1534/g3.118.200969.

3.

Breaking the curse of dimensionality to identify causal variants in Breeding 4.

Ramstein GP, Jensen SE, Buckler ES.

Theor Appl Genet. 2019 Mar;132(3):559-567. doi: 10.1007/s00122-018-3267-3. Epub 2018 Dec 13. Review.

4.

Candidate Variants for Additive and Interactive Effects on Bioenergy Traits in Switchgrass (Panicum virgatum L.) Identified by Genome-Wide Association Analyses.

Ramstein GP, Evans J, Nandety A, Saha MC, Brummer EC, Kaeppler SM, Buell CR, Casler MD.

Plant Genome. 2018 Nov;11(3). doi: 10.3835/plantgenome2018.01.0002.

5.

Dynamic Greenland ice sheet driven by pCO2 variations across the Pliocene Pleistocene transition.

Tan N, Ladant JB, Ramstein G, Dumas C, Bachem P, Jansen E.

Nat Commun. 2018 Nov 12;9(1):4755. doi: 10.1038/s41467-018-07206-w.

6.

Genome-Wide Association Study in Pseudo-F2 Populations of Switchgrass Identifies Genetic Loci Affecting Heading and Anthesis Dates.

Taylor M, Tornqvist CE, Zhao X, Grabowski P, Doerge R, Ma J, Volenec J, Evans J, Ramstein GP, Sanciangco MD, Buell CR, Casler MD, Jiang Y.

Front Plant Sci. 2018 Sep 13;9:1250. doi: 10.3389/fpls.2018.01250. eCollection 2018.

7.

VEGF121, is predictor for survival in activated B-cell-like diffuse large B-cell lymphoma and is related to an immune response gene signature conserved in cancers.

Broséus J, Mourah S, Ramstein G, Bernard S, Mounier N, Cuccuini W, Gaulard P, Gisselbrecht C, Brière J, Houlgatte R, Thieblemont C.

Oncotarget. 2017 Jul 19;8(53):90808-90824. doi: 10.18632/oncotarget.19385. eCollection 2017 Oct 31.

8.

Snowball Earth climate dynamics and Cryogenian geology-geobiology.

Hoffman PF, Abbot DS, Ashkenazy Y, Benn DI, Brocks JJ, Cohen PA, Cox GM, Creveling JR, Donnadieu Y, Erwin DH, Fairchild IJ, Ferreira D, Goodman JC, Halverson GP, Jansen MF, Le Hir G, Love GD, Macdonald FA, Maloof AC, Partin CA, Ramstein G, Rose BEJ, Rose CV, Sadler PM, Tziperman E, Voigt A, Warren SG.

Sci Adv. 2017 Nov 8;3(11):e1600983. doi: 10.1126/sciadv.1600983. eCollection 2017 Nov.

9.

Phylogeny, biogeography and character evolution in the tribe Desmodieae (Fabaceae: Papilionoideae), with special emphasis on the New Caledonian endemic genera.

Jabbour F, Gaudeul M, Lambourdière J, Ramstein G, Hassanin A, Labat JN, Sarthou C.

Mol Phylogenet Evol. 2018 Jan;118:108-121. doi: 10.1016/j.ympev.2017.09.017. Epub 2017 Sep 28.

PMID:
28966123
10.

Consequences of rapid ice sheet melting on the Sahelian population vulnerability.

Defrance D, Ramstein G, Charbit S, Vrac M, Famien AM, Sultan B, Swingedouw D, Dumas C, Gemenne F, Alvarez-Solas J, Vanderlinden JP.

Proc Natl Acad Sci U S A. 2017 Jun 20;114(25):6533-6538. doi: 10.1073/pnas.1619358114. Epub 2017 Jun 5.

11.

A composite score associated with spontaneous operational tolerance in kidney transplant recipients.

Danger R, Chesneau M, Paul C, Guérif P, Durand M, Newell KA, Kanaparthi S, Turka LA, Soulillou JP, Houlgatte R, Giral M, Ramstein G, Brouard S.

Kidney Int. 2017 Jun;91(6):1473-1481. doi: 10.1016/j.kint.2016.12.020. Epub 2017 Feb 24.

12.

Genome-wide associations with flowering time in switchgrass using exome-capture sequencing data.

Grabowski PP, Evans J, Daum C, Deshpande S, Barry KW, Kennedy M, Ramstein G, Kaeppler SM, Buell CR, Jiang Y, Casler MD.

New Phytol. 2017 Jan;213(1):154-169. doi: 10.1111/nph.14101. Epub 2016 Jul 22.

13.

Relapsed diffuse large B-cell lymphoma present different genomic profiles between early and late relapses.

Broséus J, Chen G, Hergalant S, Ramstein G, Mounier N, Guéant JL, Feugier P, Gisselbrecht C, Thieblemont C, Houlgatte R.

Oncotarget. 2016 Dec 20;7(51):83987-84002. doi: 10.18632/oncotarget.9793.

14.

Accuracy of Genomic Prediction in Switchgrass (Panicum virgatum L.) Improved by Accounting for Linkage Disequilibrium.

Ramstein GP, Evans J, Kaeppler SM, Mitchell RB, Vogel KP, Buell CR, Casler MD.

G3 (Bethesda). 2016 Apr 7;6(4):1049-62. doi: 10.1534/g3.115.024950.

15.

Expanded CD8 T-cell sharing between periphery and CNS in multiple sclerosis.

Salou M, Garcia A, Michel L, Gainche-Salmon A, Loussouarn D, Nicol B, Guillot F, Hulin P, Nedellec S, Baron D, Ramstein G, Soulillou JP, Brouard S, Nicot AB, Degauque N, Laplaud DA.

Ann Clin Transl Neurol. 2015 Jun;2(6):609-22. doi: 10.1002/acn3.199. Epub 2015 Apr 28.

16.

Genome-wide association study based on multiple imputation with low-depth sequencing data: application to biofuel traits in reed canarygrass.

Ramstein GP, Lipka AE, Lu F, Costich DE, Cherney JH, Buckler ES, Casler MD.

G3 (Bethesda). 2015 Mar 12;5(5):891-909. doi: 10.1534/g3.115.017533.

17.

A common gene signature across multiple studies relate biomarkers and functional regulation in tolerance to renal allograft.

Baron D, Ramstein G, Chesneau M, Echasseriau Y, Pallier A, Paul C, Degauque N, Hernandez-Fuentes MP, Sanchez-Fueyo A, Newell KA, Giral M, Soulillou JP, Houlgatte R, Brouard S.

Kidney Int. 2015 May;87(5):984-95. doi: 10.1038/ki.2014.395. Epub 2015 Jan 28.

18.

Aridification of the Sahara desert caused by Tethys Sea shrinkage during the Late Miocene.

Zhang Z, Ramstein G, Schuster M, Li C, Contoux C, Yan Q.

Nature. 2014 Sep 18;513(7518):401-4. doi: 10.1038/nature13705.

PMID:
25230661
19.

Exploring the impact of climate variability during the Last Glacial Maximum on the pattern of human occupation of Iberia.

Burke A, Levavasseur G, James PM, Guiducci D, Izquierdo MA, Bourgeon L, Kageyama M, Ramstein G, Vrac M.

J Hum Evol. 2014 Aug;73:35-46. doi: 10.1016/j.jhevol.2014.06.003. Epub 2014 Jul 15.

PMID:
25034085
20.

Sea surface temperature of the mid-Piacenzian ocean: a data-model comparison.

Dowsett HJ, Foley KM, Stoll DK, Chandler MA, Sohl LE, Bentsen M, Otto-Bliesner BL, Bragg FJ, Chan WL, Contoux C, Dolan AM, Haywood AM, Jonas JA, Jost A, Kamae Y, Lohmann G, Lunt DJ, Nisancioglu KH, Abe-Ouchi A, Ramstein G, Riesselman CR, Robinson MM, Rosenbloom NA, Salzmann U, Stepanek C, Strother SL, Ueda H, Yan Q, Zhang Z.

Sci Rep. 2013;3:2013. doi: 10.1038/srep02013.

21.

On the triggering mechanism of Heinrich events.

Alvarez-Solas J, Ramstein G.

Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):E1359-60. doi: 10.1073/pnas.1116575108. Epub 2011 Nov 28. No abstract available.

22.

Immune response and mitochondrial metabolism are commonly deregulated in DMD and aging skeletal muscle.

Baron D, Magot A, Ramstein G, Steenman M, Fayet G, Chevalier C, Jourdon P, Houlgatte R, Savagner F, Pereon Y.

PLoS One. 2011;6(11):e26952. doi: 10.1371/journal.pone.0026952. Epub 2011 Nov 9.

23.

Meta-analysis of muscle transcriptome data using the MADMuscle database reveals biologically relevant gene patterns.

Baron D, Dubois E, Bihouée A, Teusan R, Steenman M, Jourdon P, Magot A, Péréon Y, Veitia R, Savagner F, Ramstein G, Houlgatte R.

BMC Genomics. 2011 Feb 16;12:113. doi: 10.1186/1471-2164-12-113.

24.

MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets.

Baron D, Bihouée A, Teusan R, Dubois E, Savagner F, Steenman M, Houlgatte R, Ramstein G.

Bioinformatics. 2011 Mar 1;27(5):725-6. doi: 10.1093/bioinformatics/btq710. Epub 2011 Jan 6.

25.

Molecular risk stratification in advanced heart failure patients.

Lamirault G, Meur NL, Roussel JC, Cunff MF, Baron D, Bihouée A, Guisle I, Raharijaona M, Ramstein G, Teusan R, Chevalier C, Gueffet JP, Trochu JN, Léger JJ, Houlgatte R, Steenman M.

J Cell Mol Med. 2010 Jun;14(6B):1443-52. doi: 10.1111/j.1582-4934.2009.00913.x. Epub 2009 Sep 30.

26.

Tectonic uplift and Eastern Africa aridification.

Sepulchre P, Ramstein G, Fluteau F, Schuster M, Tiercelin JJ, Brunet M.

Science. 2006 Sep 8;313(5792):1419-23.

27.

A dynamic, web-accessible resource to process raw microarray scan data into consolidated gene expression values: importance of replication.

Le Meur N, Lamirault G, Bihouée A, Steenman M, Bédrine-Ferran H, Teusan R, Ramstein G, Léger JJ.

Nucleic Acids Res. 2004 Oct 8;32(18):5349-58. Print 2004.

28.

A 'snowball Earth' climate triggered by continental break-up through changes in runoff.

Donnadieu Y, Goddéris Y, Ramstein G, Nédélec A, Meert J.

Nature. 2004 Mar 18;428(6980):303-6.

PMID:
15029192
29.

Simulating the amplification of orbital forcing by ocean feedbacks in the last glaciation.

Khodri M, Leclainche Y, Ramstein G, Braconnot P, Marti O, Cortijo E.

Nature. 2001 Mar 29;410(6828):570-4.

PMID:
11279492
30.

"Chromosome": a knowledge-based system for the chromosome classification.

Ramstein G, Bernadet M.

Technol Health Care. 1993 Jan 1;1(2):171-80. doi: 10.3233/THC-1993-1208.

PMID:
25273165

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