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Items: 46

1.

Oxadiazon affects the expression and activity of aldehyde dehydrogenase and acylphosphatase in human striatal precursor cells: A possible role in neurotoxicity.

Degl'Innocenti D, Ramazzotti M, Sarchielli E, Monti D, Chevanne M, Vannelli GB, Barletta E.

Toxicology. 2019 Jan 1;411:110-121. doi: 10.1016/j.tox.2018.10.021. Epub 2018 Nov 1.

PMID:
30391265
2.

Stromal-induced downregulation of miR-1247 promotes prostate cancer malignancy.

Taddei ML, Cavallini L, Ramazzotti M, Comito G, Pietrovito L, Morandi A, Giannoni E, Raugei G, Chiarugi P.

J Cell Physiol. 2018 Oct 30. doi: 10.1002/jcp.27679. [Epub ahead of print] Review.

PMID:
30378132
3.

Population genomics reveals evolution and variation of Saccharomyces cerevisiae in the human and insects gut.

Ramazzotti M, Stefanini I, Di Paola M, De Filippo C, Rizzetto L, Berná L, Dapporto L, Rivero D, Tocci N, Weil T, Lenucci MS, Lionetti P, Cavalieri D.

Environ Microbiol. 2019 Jan;21(1):50-71. doi: 10.1111/1462-2920.14422. Epub 2018 Nov 21.

PMID:
30246283
4.

Systemic oxidative stress in congenital central hypoventilation syndrome.

Degl'Innocenti D, Becatti M, Peruzzi M, Fiorillo C, Ramazzotti M, Nassi N, Arzilli C, Piumelli R.

Eur Respir J. 2018 Nov 15;52(5). pii: 1801497. doi: 10.1183/13993003.01497-2018. Print 2018 Nov. No abstract available.

PMID:
30209197
5.

Eomes controls the development of Th17-derived (non-classic) Th1 cells during chronic inflammation.

Mazzoni A, Maggi L, Siracusa F, Ramazzotti M, Rossi MC, Santarlasci V, Montaini G, Capone M, Rossettini B, De Palma R, Kruglov A, Chang HD, Cimaz R, Maggi E, Romagnani S, Liotta F, Cosmi L, Annunziato F.

Eur J Immunol. 2019 Jan;49(1):79-95. doi: 10.1002/eji.201847677. Epub 2018 Nov 22.

PMID:
30144030
6.

Bioactive Compounds from Posidonia oceanica (L.) Delile Impair Malignant Cell Migration through Autophagy Modulation.

Leri M, Ramazzotti M, Vasarri M, Peri S, Barletta E, Pretti C, Degl'Innocenti D.

Mar Drugs. 2018 Apr 21;16(4). pii: E137. doi: 10.3390/md16040137.

7.

Diet, Environments, and Gut Microbiota. A Preliminary Investigation in Children Living in Rural and Urban Burkina Faso and Italy.

De Filippo C, Di Paola M, Ramazzotti M, Albanese D, Pieraccini G, Banci E, Miglietta F, Cavalieri D, Lionetti P.

Front Microbiol. 2017 Oct 13;8:1979. doi: 10.3389/fmicb.2017.01979. eCollection 2017.

8.

Survival of metastatic melanoma patients after dendritic cell vaccination correlates with expression of leukocyte phosphatidylethanolamine-binding protein 1/Raf kinase inhibitory protein.

Buschow SI, Ramazzotti M, Reinieren-Beeren IMJ, Heinzerling LM, Westdorp H, Stefanini I, Beltrame L, Hato SV, Ellebaek E, Gross S, Nguyen VA, Weinlich G, Ragoussis J, Baban D, Schuler-Thurner B, Svane IM, Romani N, Austyn JM, De Vries IJM, Schuler G, Cavalieri D, Figdor CG.

Oncotarget. 2017 Jun 27;8(40):67439-67456. doi: 10.18632/oncotarget.18698. eCollection 2017 Sep 15.

9.

Musculin inhibits human T-helper 17 cell response to interleukin 2 by controlling STAT5B activity.

Santarlasci V, Mazzoni A, Capone M, Rossi MC, Maggi L, Montaini G, Rossettini B, Cimaz R, Ramazzotti M, Barra G, De Palma R, Maggi E, Liotta F, Cosmi L, Romagnani S, Annunziato F.

Eur J Immunol. 2017 Sep;47(9):1427-1442. doi: 10.1002/eji.201746996. Epub 2017 Jul 6.

10.

From the Evolution of Protein Sequences Able to Resist Self-Assembly to the Prediction of Aggregation Propensity.

Bemporad F, Ramazzotti M.

Int Rev Cell Mol Biol. 2017;329:1-47. doi: 10.1016/bs.ircmb.2016.08.008. Epub 2016 Oct 27.

PMID:
28109326
11.

Chitinase 3-like-1 is produced by human Th17 cells and correlates with the level of inflammation in juvenile idiopathic arthritis patients.

Capone M, Maggi L, Santarlasci V, Rossi MC, Mazzoni A, Montaini G, Cimaz R, Ramazzotti M, Piccinni MP, Barra G, De Palma R, Liotta F, Maggi E, Romagnani S, Annunziato F, Cosmi L.

Clin Mol Allergy. 2016 Nov 8;14:16. eCollection 2016.

12.

Mechanisms for the inhibition of amyloid aggregation by small ligands.

Ramazzotti M, Melani F, Marchi L, Mulinacci N, Gestri S, Tiribilli B, Degl'Innocenti D.

Biosci Rep. 2016 Sep 29;36(5). pii: e00385. Print 2016 Oct.

13.

The polyphenol Oleuropein aglycone hinders the growth of toxic transthyretin amyloid assemblies.

Leri M, Nosi D, Natalello A, Porcari R, Ramazzotti M, Chiti F, Bellotti V, Doglia SM, Stefani M, Bucciantini M.

J Nutr Biochem. 2016 Apr;30:153-66. doi: 10.1016/j.jnutbio.2015.12.009. Epub 2016 Jan 12.

PMID:
27012632
14.

Molecular insights into cell toxicity of a novel familial amyloidogenic variant of β2-microglobulin.

Leri M, Bemporad F, Oropesa-Nuñez R, Canale C, Calamai M, Nosi D, Ramazzotti M, Giorgetti S, Pavone FS, Bellotti V, Stefani M, Bucciantini M.

J Cell Mol Med. 2016 Aug;20(8):1443-56. doi: 10.1111/jcmm.12833. Epub 2016 Mar 18.

15.

riboFrame: An Improved Method for Microbial Taxonomy Profiling from Non-Targeted Metagenomics.

Ramazzotti M, Berná L, Donati C, Cavalieri D.

Front Genet. 2015 Nov 17;6:329. doi: 10.3389/fgene.2015.00329. eCollection 2015.

16.

Hydrophilic extract from Posidonia oceanica inhibits activity and expression of gelatinases and prevents HT1080 human fibrosarcoma cell line invasion.

Barletta E, Ramazzotti M, Fratianni F, Pessani D, Degl'Innocenti D.

Cell Adh Migr. 2015;9(6):422-31. doi: 10.1080/19336918.2015.1008330. Epub 2015 Jul 15.

17.

Human recombinant domain antibodies against multiple sclerosis antigenic peptide CSF114(Glc).

Niccheri F, Real-Fernàndez F, Ramazzotti M, Lolli F, Rossi G, Rovero P, Degl'Innocenti D.

J Mol Recognit. 2014 Oct;27(10):618-26. doi: 10.1002/jmr.2386.

PMID:
25178857
18.

Toxicity of protein oligomers is rationalized by a function combining size and surface hydrophobicity.

Mannini B, Mulvihill E, Sgromo C, Cascella R, Khodarahmi R, Ramazzotti M, Dobson CM, Cecchi C, Chiti F.

ACS Chem Biol. 2014 Oct 17;9(10):2309-17. doi: 10.1021/cb500505m. Epub 2014 Aug 11.

PMID:
25079908
19.

Mesenchymal to amoeboid transition is associated with stem-like features of melanoma cells.

Taddei ML, Giannoni E, Morandi A, Ippolito L, Ramazzotti M, Callari M, Gandellini P, Chiarugi P.

Cell Commun Signal. 2014 Apr 1;12:24. doi: 10.1186/1478-811X-12-24.

20.

Insight into molecular and functional properties of NMNAT3 reveals new hints of NAD homeostasis within human mitochondria.

Felici R, Lapucci A, Ramazzotti M, Chiarugi A.

PLoS One. 2013 Oct 14;8(10):e76938. doi: 10.1371/journal.pone.0076938. eCollection 2013. Erratum in: PLoS One. 2013;8(12). doi:10.1371/annotation/f5e6107f-a911-4c15-a881-7cb7e4946ff6.

21.

Bioinformatic approaches for functional annotation and pathway inference in metagenomics data.

De Filippo C, Ramazzotti M, Fontana P, Cavalieri D.

Brief Bioinform. 2012 Nov;13(6):696-710. doi: 10.1093/bib/bbs070. Review.

22.

Polyglutamine repeats are associated to specific sequence biases that are conserved among eukaryotes.

Ramazzotti M, Monsellier E, Kamoun C, Degl'Innocenti D, Melki R.

PLoS One. 2012;7(2):e30824. doi: 10.1371/journal.pone.0030824. Epub 2012 Feb 1.

23.

A computational pipeline to discover highly phylogenetically informative genes in sequenced genomes: application to Saccharomyces cerevisiae natural strains.

Ramazzotti M, Berná L, Stefanini I, Cavalieri D.

Nucleic Acids Res. 2012 May;40(9):3834-48. doi: 10.1093/nar/gks005. Epub 2012 Jan 20.

24.

Prediction of amyloid aggregation in vivo.

Belli M, Ramazzotti M, Chiti F.

EMBO Rep. 2011 Jul 1;12(7):657-63. doi: 10.1038/embor.2011.116. Review.

25.

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa.

De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S, Collini S, Pieraccini G, Lionetti P.

Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14691-6. doi: 10.1073/pnas.1005963107. Epub 2010 Aug 2.

26.

A computational approach for identifying the chemical factors involved in the glycosaminoglycans-mediated acceleration of amyloid fibril formation.

Monsellier E, Ramazzotti M, Taddei N, Chiti F.

PLoS One. 2010 Jun 29;5(6):e11363. doi: 10.1371/journal.pone.0011363.

27.

Intravitreal infliximab clearance in a rabbit model: different sampling methods and assay techniques.

Giansanti F, Ramazzotti M, Giuntoli M, Virgili G, Vannozzi L, Degl'Innocenti D, Menchini U.

Invest Ophthalmol Vis Sci. 2009 Nov;50(11):5328-35. doi: 10.1167/iovs.09-3569. Epub 2009 May 27.

PMID:
19474407
28.

Aggregation propensity of the human proteome.

Monsellier E, Ramazzotti M, Taddei N, Chiti F.

PLoS Comput Biol. 2008 Oct;4(10):e1000199. doi: 10.1371/journal.pcbi.1000199. Epub 2008 Oct 17.

29.

XYLab: an interactive plotting tool for mixed multivariate data observation and interpretation.

Ramazzotti M, Monsellier E, Degl'Innocenti D.

Bioinformation. 2008 Jul 3;2(9):392-4.

30.

Analytic investigations on protein content in refined seed oils: implications in food allergy.

Ramazzotti M, Mulinacci N, Pazzagli L, Moriondo M, Manao G, Vincieri FF, Degl'Innocenti D.

Food Chem Toxicol. 2008 Nov;46(11):3383-8. doi: 10.1016/j.fct.2008.08.005. Epub 2008 Aug 15.

PMID:
18768153
31.

Angiotensin II upregulates renin-angiotensin system in human isolated T lymphocytes.

Coppo M, Boddi M, Bandinelli M, Degl'innocenti D, Ramazzotti M, Marra F, Galastri S, Abbate R, Gensini GF, Poggesi L.

Regul Pept. 2008 Nov 29;151(1-3):1-6. doi: 10.1016/j.regpep.2008.07.010. Epub 2008 Aug 3.

PMID:
18723052
32.

The folding process of acylphosphatase from Escherichia coli is remarkably accelerated by the presence of a disulfide bond.

Parrini C, Bemporad F, Baroncelli A, Gianni S, Travaglini-Allocatelli C, Kohn JE, Ramazzotti M, Chiti F, Taddei N.

J Mol Biol. 2008 Jun 20;379(5):1107-18. doi: 10.1016/j.jmb.2008.04.051. Epub 2008 Apr 30.

PMID:
18495159
33.

The CAI Analyser Package: inferring gene expressivity from raw genomic data.

Ramazzotti M, Brilli M, Fani R, Manao G, Degl'innocenti D.

In Silico Biol. 2007;7(4-5):507-26.

PMID:
18391240
34.

A pilot study on ocular safety of intravitreal infliximab in a rabbit model.

Giansanti F, Ramazzotti M, Vannozzi L, Rapizzi E, Fiore T, Iaccheri B, Degl' Innocenti D, Moncini D, Menchini U.

Invest Ophthalmol Vis Sci. 2008 Mar;49(3):1151-6. doi: 10.1167/iovs.07-0932.

PMID:
18326743
35.

Uncommon clinical presentations of pheochromocytoma and paraganglioma in two different patients affected by two distinct novel VHL germline mutations.

Ercolino T, Becherini L, Valeri A, Maiello M, Gaglianò MS, Parenti G, Ramazzotti M, Piscitelli E, Simi L, Pinzani P, Nesi G, Degl'Innocenti D, Console N, Bergamini C, Mannelli M.

Clin Endocrinol (Oxf). 2008 May;68(5):762-8. Epub 2007 Nov 19.

PMID:
18031321
36.

The distribution of residues in a polypeptide sequence is a determinant of aggregation optimized by evolution.

Monsellier E, Ramazzotti M, de Laureto PP, Tartaglia GG, Taddei N, Fontana A, Vendruscolo M, Chiti F.

Biophys J. 2007 Dec 15;93(12):4382-91. Epub 2007 Aug 31.

37.

The intrachain disulfide bridge is responsible of the unusual stability properties of novel acylphosphatase from Escherichia coli.

Ramazzotti M, Parrini C, Stefani M, Manao G, Degl'Innocenti D.

FEBS Lett. 2006 Dec 22;580(30):6763-8. Epub 2006 Nov 28.

38.

Nature and significance of the interactions between amyloid fibrils and biological polyelectrolytes.

Calamai M, Kumita JR, Mifsud J, Parrini C, Ramazzotti M, Ramponi G, Taddei N, Chiti F, Dobson CM.

Biochemistry. 2006 Oct 24;45(42):12806-15.

PMID:
17042499
39.

NMR solution structure of the acylphosphatase from Escherichia coli.

Pagano K, Ramazzotti M, Viglino P, Esposito G, Degl'Innocenti D, Taddei N, Corazza A.

J Biomol NMR. 2006 Nov;36(3):199-204. Epub 2006 Oct 5.

PMID:
17021943
40.

Amyloid formation of a protein in the absence of initial unfolding and destabilization of the native state.

Soldi G, Bemporad F, Torrassa S, Relini A, Ramazzotti M, Taddei N, Chiti F.

Biophys J. 2005 Dec;89(6):4234-44. Epub 2005 Sep 16.

41.

Glycine residues appear to be evolutionarily conserved for their ability to inhibit aggregation.

Parrini C, Taddei N, Ramazzotti M, Degl'Innocenti D, Ramponi G, Dobson CM, Chiti F.

Structure. 2005 Aug;13(8):1143-51.

42.

Entropy calculator: getting the best from your multiple protein alignments.

Ramazzotti M, Degl'Innocenti D, Manao G, Ramponi G.

Ital J Biochem. 2004 Mar;53(1):16-22.

PMID:
15356957
43.

Three-dimensional structural characterization of a novel Drosophila melanogaster acylphosphatase.

Zuccotti S, Rosano C, Ramazzotti M, Degl'Innocenti D, Stefani M, Manao G, Bolognesi M.

Acta Crystallogr D Biol Crystallogr. 2004 Jun;60(Pt 6):1177-9. Epub 2004 May 21.

PMID:
15159593
44.

ACYP1 gene possesses two alternative splicing forms that induce apoptosis.

Degl'Innocenti D, Marzocchini R, Malentacchi F, Ramazzotti M, Raugei G, Ramponi G.

IUBMB Life. 2004 Jan;56(1):29-33.

45.

Selection of antibody fragments specific for an alpha-helix region of acylphosphatase.

Degl'Innocenti D, Taddei N, Ramazzotti M, Stefani M, Chiti F, Ramponi G.

J Mol Recognit. 2004 Jan-Feb;17(1):62-6.

PMID:
14872538
46.

Characterization of a novel Drosophila melanogaster acylphosphatase.

Degl'Innocenti D, Ramazzotti M, Marzocchini R, Chiti F, Raugei G, Ramponi G.

FEBS Lett. 2003 Jan 30;535(1-3):171-4.

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