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Items: 20

1.

Machine learning can accurately predict pre-admission baseline hemoglobin and creatinine in intensive care patients.

Dauvin A, Donado C, Bachtiger P, Huang KC, Sauer CM, Ramazzotti D, Bonvini M, Celi LA, Douglas MJ.

NPJ Digit Med. 2019 Nov 29;2:116. doi: 10.1038/s41746-019-0192-z. eCollection 2019.

2.

Data Pre-processing.

Malley B, Ramazzotti D, Wu JT.

Secondary Analysis of Electronic Health Records [Internet]. Cham (CH): Springer; 2016. Chapter 12.
2016 Sep 10.

3.

Comprehensive genomic characterization of breast tumors with BRCA1 and BRCA2 mutations.

Lal A, Ramazzotti D, Weng Z, Liu K, Ford JM, Sidow A.

BMC Med Genomics. 2019 Jun 10;12(1):84. doi: 10.1186/s12920-019-0545-0.

4.

Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data.

Ramazzotti D, Graudenzi A, De Sano L, Antoniotti M, Caravagna G.

BMC Bioinformatics. 2019 Apr 25;20(1):210. doi: 10.1186/s12859-019-2795-4.

5.

Withholding or withdrawing invasive interventions may not accelerate time to death among dying ICU patients.

Ramazzotti D, Clardy P, Celi LA, Stone DJ, Rudin RS.

PLoS One. 2019 Feb 14;14(2):e0212439. doi: 10.1371/journal.pone.0212439. eCollection 2019.

6.

Multi-omic tumor data reveal diversity of molecular mechanisms that correlate with survival.

Ramazzotti D, Lal A, Wang B, Batzoglou S, Sidow A.

Nat Commun. 2018 Oct 26;9(1):4453. doi: 10.1038/s41467-018-06921-8.

7.

Improved Survival of Cancer Patients Admitted to the Intensive Care Unit between 2002 and 2011 at a U.S. Teaching Hospital.

Sauer CM, Dong J, Celi LA, Ramazzotti D.

Cancer Res Treat. 2019 Jul;51(3):973-981. doi: 10.4143/crt.2018.360. Epub 2018 Oct 10.

8.

Detecting repeated cancer evolution from multi-region tumor sequencing data.

Caravagna G, Giarratano Y, Ramazzotti D, Tomlinson I, Graham TA, Sanguinetti G, Sottoriva A.

Nat Methods. 2018 Sep;15(9):707-714. doi: 10.1038/s41592-018-0108-x. Epub 2018 Aug 31.

9.

Modeling Cumulative Biological Phenomena with Suppes-Bayes Causal Networks.

Ramazzotti D, Graudenzi A, Caravagna G, Antoniotti M.

Evol Bioinform Online. 2018 Jul 4;14:1176934318785167. doi: 10.1177/1176934318785167. eCollection 2018.

10.

SIMLR: A Tool for Large-Scale Genomic Analyses by Multi-Kernel Learning.

Wang B, Ramazzotti D, De Sano L, Zhu J, Pierson E, Batzoglou S.

Proteomics. 2018 Jan;18(2). doi: 10.1002/pmic.201700232.

PMID:
29265724
11.

Erratum: OncoScore: a novel, Internet-based tool to assess the oncogenic potential of genes.

Piazza R, Ramazzotti D, Spinelli R, Pirola A, De Sano L, Ferrari P, Magistroni V, Cordani N, Sharma N, Gambacorti-Passerini C.

Sci Rep. 2017 May 22;7:46823. doi: 10.1038/srep46823.

12.

OncoScore: a novel, Internet-based tool to assess the oncogenic potential of genes.

Piazza R, Ramazzotti D, Spinelli R, Pirola A, De Sano L, Ferrari P, Magistroni V, Cordani N, Sharma N, Gambacorti-Passerini C.

Sci Rep. 2017 Apr 7;7:46290. doi: 10.1038/srep46290. Erratum in: Sci Rep. 2017 May 22;7:46823.

13.

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning.

Wang B, Zhu J, Pierson E, Ramazzotti D, Batzoglou S.

Nat Methods. 2017 Apr;14(4):414-416. doi: 10.1038/nmeth.4207. Epub 2017 Mar 6.

PMID:
28263960
14.

Algorithmic methods to infer the evolutionary trajectories in cancer progression.

Caravagna G, Graudenzi A, Ramazzotti D, Sanz-Pamplona R, De Sano L, Mauri G, Moreno V, Antoniotti M, Mishra B.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):E4025-34. doi: 10.1073/pnas.1520213113. Epub 2016 Jun 28.

15.

TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data.

De Sano L, Caravagna G, Ramazzotti D, Graudenzi A, Mauri G, Mishra B, Antoniotti M.

Bioinformatics. 2016 Jun 15;32(12):1911-3. doi: 10.1093/bioinformatics/btw035. Epub 2016 Feb 9.

16.

CAPRI: efficient inference of cancer progression models from cross-sectional data.

Ramazzotti D, Caravagna G, Olde Loohuis L, Graudenzi A, Korsunsky I, Mauri G, Antoniotti M, Mishra B.

Bioinformatics. 2015 Sep 15;31(18):3016-26. doi: 10.1093/bioinformatics/btv296. Epub 2015 May 13.

17.

Inferring tree causal models of cancer progression with probability raising.

Olde Loohuis L, Caravagna G, Graudenzi A, Ramazzotti D, Mauri G, Antoniotti M, Mishra B.

PLoS One. 2014 Oct 9;9(10):e108358. doi: 10.1371/journal.pone.0108358. eCollection 2014. Erratum in: PLoS One. 2014;9(12):e115570. Loohuis, Loes Olde [corrected to Olde Loohuis, Loes].

18.

Gorham-Stout disease as a complication of posterior shoulder capsulorrhaphy.

Busilacchi A, Ramazzotti D, Ulisse S, Gigante A.

J Shoulder Elbow Surg. 2012 Sep;21(9):e1-7. doi: 10.1016/j.jse.2012.05.024. No abstract available.

PMID:
22889527
19.

Use of collagen scaffold and autologous bone marrow concentrate as a one-step cartilage repair in the knee: histological results of second-look biopsies at 1 year follow-up.

Gigante A, Calcagno S, Cecconi S, Ramazzotti D, Manzotti S, Enea D.

Int J Immunopathol Pharmacol. 2011 Jan-Mar;24(1 Suppl 2):69-72.

PMID:
21669141
20.

First stereocontrolled synthesis of (S)-cleonin and related cyclopropyl-substituted amino acids.

Esposito A, Piras PP, Ramazzotti D, Taddei M.

Org Lett. 2001 Oct 18;3(21):3273-5.

PMID:
11594812

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