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Oriented Active Solids.

Maitra A, Ramaswamy S.

Phys Rev Lett. 2019 Dec 6;123(23):238001. doi: 10.1103/PhysRevLett.123.238001.


Porcine Small Intestinal Submucosa Mitral Valve Material Responses Support Acute Somatic Growth.

Gonzalez BA, Pour Issa E, Mankame OV, Bustillos J, Cuellar A, Rodriguez AJ, Scholl F, Bibevski S, Hernandez L, Brehier V, Casares M, Rivas-Wagner K, Morales P, Lopez J, Wagner J, Bibevski J, Agarwal A, George F, Ramaswamy S.

Tissue Eng Part A. 2020 Jan 16. doi: 10.1089/ten.TEA.2019.0220. [Epub ahead of print]


Classification of Covert Brain Infarct Subtype and Risk of Death and Vascular Events.

Gutierrez J, Gil-Guevara A, Ramaswamy S, DeRosa J, Di Tullio MR, Cheung K, Rundek T, Sacco RL, Wright CB, Elkind MSV.

Stroke. 2020 Jan;51(1):90-98. doi: 10.1161/STROKEAHA.119.026068. Epub 2019 Nov 26.


Estimating the Readily-Releasable Vesicle Pool Size at Synaptic Connections in the Neocortex.

Barros-Zulaica N, Rahmon J, Chindemi G, Perin R, Markram H, Muller E, Ramaswamy S.

Front Synaptic Neurosci. 2019 Oct 15;11:29. doi: 10.3389/fnsyn.2019.00029. eCollection 2019.


The role of genexpert in the diagnosis of tubercular pleural effusion in India.

Chakraborty A, Ramaswamy S, Shivananjiah AJ, Puttaswamy RB, Chikkavenkatappa N.

Adv Respir Med. 2019;87(5):276-280. doi: 10.5603/ARM.2019.0049.


A Novel Photoplethysmography Sensor for Vital Signs Monitoring from the Human Trachea.

May JM, Phillips JP, Fitchat T, Ramaswamy S, Snidvongs S, Kyriacou PA.

Biosensors (Basel). 2019 Oct 2;9(4). pii: E119. doi: 10.3390/bios9040119.


Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway.

Sathyanarayanan N, Cannone G, Gakhar L, Katagihallimath N, Sowdhamini R, Ramaswamy S, Vinothkumar KR.

Nat Commun. 2019 Sep 11;10(1):4127. doi: 10.1038/s41467-019-11931-1.


The Histone Deacetylase SIRT6 Restrains Transcription Elongation via Promoter-Proximal Pausing.

Etchegaray JP, Zhong L, Li C, Henriques T, Ablondi E, Nakadai T, Van Rechem C, Ferrer C, Ross KN, Choi JE, Samarakkody A, Ji F, Chang A, Sadreyev RI, Ramaswamy S, Nechaev S, Whetstine JR, Roeder RG, Adelman K, Goren A, Mostoslavsky R.

Mol Cell. 2019 Aug 22;75(4):683-699.e7. doi: 10.1016/j.molcel.2019.06.034. Epub 2019 Aug 6.


Novel drug-independent sedation level estimation based on machine learning of quantitative frontal electroencephalogram features in healthy volunteers.

Ramaswamy SM, Kuizenga MH, Weerink MAS, Vereecke HEM, Struys MMRF, Nagaraj SB.

Br J Anaesth. 2019 Oct;123(4):479-487. doi: 10.1016/j.bja.2019.06.004. Epub 2019 Jul 18.


Identifying an Optimal Cutoff of the Montreal Cognitive Assessment to Predict Amyloid-PET Positivity in a Referral Memory Clinic.

Nair AK, Ramaswamy S, Kan K, Nair S.

Alzheimer Dis Assoc Disord. 2019 Jul-Sep;33(3):194-199. doi: 10.1097/WAD.0000000000000330.


Kepler Orbits in Pairs of Disks Settling in a Viscous Fluid.

Chajwa R, Menon N, Ramaswamy S.

Phys Rev Lett. 2019 Jun 7;122(22):224501. doi: 10.1103/PhysRevLett.122.224501.


Methodologies and skills in child and adolescent mental health, psychosocial care, and protection: A repository of training and intervention materials.

Ramaswamy S, Seshadri S.

Indian J Psychiatry. 2019 May-Jun;61(3):226-227. doi: 10.4103/psychiatry.IndianJPsychiatry_155_19. No abstract available.


RIP1 inhibition blocks inflammatory diseases but not tumor growth or metastases.

Patel S, Webster JD, Varfolomeev E, Kwon YC, Cheng JH, Zhang J, Dugger DL, Wickliffe KE, Maltzman A, Sujatha-Bhaskar S, Bir Kohli P, Ramaswamy S, Deshmukh G, Liederer BM, Fong R, Hamilton G, Lupardus P, Caplazi P, Lee WP, van Lookeren Campagne M, Johnson A, McKenzie BS, Junttila MR, Newton K, Vucic D.

Cell Death Differ. 2020 Jan;27(1):161-175. doi: 10.1038/s41418-019-0347-0. Epub 2019 May 17.


Elastin-Dependent Aortic Heart Valve Leaflet Curvature Changes During Cyclic Flexure.

Tesfamariam MD, Mirza AM, Chaparro D, Ali AZ, Montalvan R, Saytashev I, Gonzalez BA, Barreto A, Ramella-Roman J, Hutcheson JD, Ramaswamy S.

Bioengineering (Basel). 2019 May 7;6(2). pii: E39. doi: 10.3390/bioengineering6020039.


Inferring critical thresholds of ecosystem transitions from spatial data.

Majumder S, Tamma K, Ramaswamy S, Guttal V.

Ecology. 2019 Jul;100(7):e02722. doi: 10.1002/ecy.2722. Epub 2019 May 3.


Cellular, Synaptic and Network Effects of Acetylcholine in the Neocortex.

Colangelo C, Shichkova P, Keller D, Markram H, Ramaswamy S.

Front Neural Circuits. 2019 Apr 12;13:24. doi: 10.3389/fncir.2019.00024. eCollection 2019. Review.


Potent and selective inhibitors of receptor-interacting protein kinase 1 that lack an aromatic back pocket group.

Hamilton GL, Chen H, Deshmukh G, Eigenbrot C, Fong R, Johnson A, Kohli PB, Lupardus PJ, Liederer BM, Ramaswamy S, Wang H, Wang J, Xu Z, Zhu Y, Vucic D, Patel S.

Bioorg Med Chem Lett. 2019 Jun 15;29(12):1497-1501. doi: 10.1016/j.bmcl.2019.04.014. Epub 2019 Apr 11.


Trapping and sorting active particles: Motility-induced condensation and smectic defects.

Kumar N, Gupta RK, Soni H, Ramaswamy S, Sood AK.

Phys Rev E. 2019 Mar;99(3-1):032605. doi: 10.1103/PhysRevE.99.032605.


Stress fluctuations in transient active networks.

Goldstein D, Ramaswamy S, Chakraborty B.

Soft Matter. 2019 Apr 24;15(17):3520-3526. doi: 10.1039/c9sm00205g.


AKT1low quiescent cancer cells in ductal carcinoma in situ of the breast.

Kabraji S, Sole X, Huang Y, Bango C, Sgroi D, Loda M, Ramaswamy S.

NPJ Breast Cancer. 2019 Mar 21;5:10. doi: 10.1038/s41523-019-0105-y. eCollection 2019.


A Computational Model of Loss of Dopaminergic Cells in Parkinson's Disease Due to Glutamate-Induced Excitotoxicity.

Muddapu VR, Mandali A, Chakravarthy VS, Ramaswamy S.

Front Neural Circuits. 2019 Feb 25;13:11. doi: 10.3389/fncir.2019.00011. eCollection 2019.


COX-2 mediates tumor-stromal prolactin signaling to initiate tumorigenesis.

Zheng Y, Comaills V, Burr R, Boulay G, Miyamoto DT, Wittner BS, Emmons E, Sil S, Koulopoulos MW, Broderick KT, Tai E, Rengarajan S, Kulkarni AS, Shioda T, Wu CL, Ramaswamy S, Ting DT, Toner M, Rivera MN, Maheswaran S, Haber DA.

Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5223-5232. doi: 10.1073/pnas.1819303116. Epub 2019 Feb 28.


Crystal structures of 6a,6b,7,11a-tetra-hydro-6H,9H-spiro-[chromeno[3',4':3,4]pyrrolo-[1,2-c]thia-zole-11,3'-indoline]-2',6-dione and 5'-methyl-6a,6b,7,11a-tetra-hydro-6H,9H-spiro-[chromeno[3',4':3,4]pyrrolo-[1,2-c]thia-zole-11,3'-indoline]-2',6-dione.

Pangajavalli S, Ranjithkumar R, Srinivasan N, Ramaswamy S, Selvanayagam S.

Acta Crystallogr E Crystallogr Commun. 2019 Jan 22;75(Pt 2):246-250. doi: 10.1107/S2056989019000045. eCollection 2019 Feb 1.


Statistical assessment and visualization of synergies for large-scale sparse drug combination datasets.

Amzallag A, Ramaswamy S, Benes CH.

BMC Bioinformatics. 2019 Feb 18;20(1):83. doi: 10.1186/s12859-019-2642-7.


Niraparib activates interferon signaling and potentiates anti-PD-1 antibody efficacy in tumor models.

Wang Z, Sun K, Xiao Y, Feng B, Mikule K, Ma X, Feng N, Vellano CP, Federico L, Marszalek JR, Mills GB, Hanke J, Ramaswamy S, Wang J.

Sci Rep. 2019 Feb 12;9(1):1853. doi: 10.1038/s41598-019-38534-6.


Clinical Practice Guidelines for Child Sexual Abuse.

Seshadri S, Ramaswamy S.

Indian J Psychiatry. 2019 Jan;61(Suppl 2):317-332. doi: 10.4103/psychiatry.IndianJPsychiatry_502_18. No abstract available.


Cutaneous Abscess: An Isolated Manifestation of Disseminated Anaplastic Large-cell Lymphoma in a Child.

Sneha LM, Ramaswamy S, Shalini S, Scott J.

Indian J Dermatol. 2019 Jan-Feb;64(1):83-84. doi: 10.4103/ijd.IJD_514_16. No abstract available.


Objective Morphological Classification of Neocortical Pyramidal Cells.

Kanari L, Ramaswamy S, Shi Y, Morand S, Meystre J, Perin R, Abdellah M, Wang Y, Hess K, Markram H.

Cereb Cortex. 2019 Apr 1;29(4):1719-1735. doi: 10.1093/cercor/bhy339.


A comparative pharmacokinetic study of PARP inhibitors demonstrates favorable properties for niraparib efficacy in preclinical tumor models.

Sun K, Mikule K, Wang Z, Poon G, Vaidyanathan A, Smith G, Zhang ZY, Hanke J, Ramaswamy S, Wang J.

Oncotarget. 2018 Dec 14;9(98):37080-37096. doi: 10.18632/oncotarget.26354. eCollection 2018 Dec 14.


TSR-033, a Novel Therapeutic Antibody Targeting LAG-3, Enhances T-Cell Function and the Activity of PD-1 Blockade In Vitro and In Vivo.

Ghosh S, Sharma G, Travers J, Kumar S, Choi J, Jun HT, Kehry M, Ramaswamy S, Jenkins D.

Mol Cancer Ther. 2019 Mar;18(3):632-641. doi: 10.1158/1535-7163.MCT-18-0836. Epub 2018 Dec 26.


Reflections on current Ayurveda research.

Ramaswamy S.

J Ayurveda Integr Med. 2018 Oct - Dec;9(4):250-251. doi: 10.1016/j.jaim.2018.11.001. Epub 2018 Dec 17.


Correction for Al Hefeiti et al., "Draft Genome Sequence of Bacillus cereus Strain UAEU-H3K6M1, a Bacterium with Potential Bioremediation Abilities, Isolated from Petroleum Sludge".

Al Hefeiti MA, Mafofo J, Xavier GT, Ramaswamy S, Baby B, Harilal D, Vijayan R, Ashraf SS.

Microbiol Resour Announc. 2018 Sep 13;7(10). pii: e01147-18. doi: 10.1128/MRA.01147-18. eCollection 2018 Sep.


Draft Genome Sequence of Bacillus cereus Strain UAEU-H3K6M1, a Bacterium with Potential Bioremediation Abilities, Isolated from Petroleum Sludge.

Al Hefeiti MA, Mafofo J, Xavier GT, Ramaswamy S, Baby B, Harilal D, Vijayan R, Ashraf SS.

Microbiol Resour Announc. 2018 Jul 26;7(3). pii: e00856-18. doi: 10.1128/MRA.00856-18. eCollection 2018 Jul. Erratum in: Microbiol Resour Announc. 2018 Sep 13;7(10):.


A strategy to identify a ketoreductase that preferentially synthesizes pharmaceutically relevant (S)-alcohols using whole-cell biotransformation.

Haq SF, Shanbhag AP, Karthikeyan S, Hassan I, Thanukrishnan K, Ashok A, Sukumaran S, Ramaswamy S, Bharatham N, Datta S, Samant S, Katagihallimath N.

Microb Cell Fact. 2018 Dec 3;17(1):192. doi: 10.1186/s12934-018-1036-2.


Waveform reconstruction with a Cs based free-induction-decay magnetometer.

Hunter D, Jiménez-Martínez R, Herbsommer J, Ramaswamy S, Li W, Riis E.

Opt Express. 2018 Nov 12;26(23):30523-30531. doi: 10.1364/OE.26.030523.


Synergy of hemicelluloses removal and bovine serum albumin blocking of lignin for enhanced enzymatic hydrolysis.

Ding D, Li P, Zhang X, Ramaswamy S, Xu F.

Bioresour Technol. 2019 Feb;273:231-236. doi: 10.1016/j.biortech.2018.11.024. Epub 2018 Nov 9.


Crystal structures and kinetics of N-acetylneuraminate lyase from Fusobacterium nucleatum.

Kumar JP, Rao H, Nayak V, Ramaswamy S.

Acta Crystallogr F Struct Biol Commun. 2018 Nov 1;74(Pt 11):725-732. doi: 10.1107/S2053230X18012992. Epub 2018 Oct 17.


The structure of PghL hydrolase bound to its substrate poly-γ-glutamate.

Ramaswamy S, Rasheed M, Morelli CF, Calvio C, Sutton BJ, Pastore A.

FEBS J. 2018 Dec;285(24):4575-4589. doi: 10.1111/febs.14688. Epub 2018 Nov 19.


Chest X ray score (Timika score): an useful adjunct to predict treatment outcome in tuberculosis.

Chakraborthy A, Shivananjaiah AJ, Ramaswamy S, Chikkavenkatappa N.

Adv Respir Med. 2018;86(5):205-210. doi: 10.5603/ARM.2018.0032.


Data-Driven Modeling of Cholinergic Modulation of Neural Microcircuits: Bridging Neurons, Synapses and Network Activity.

Ramaswamy S, Colangelo C, Markram H.

Front Neural Circuits. 2018 Oct 9;12:77. doi: 10.3389/fncir.2018.00077. eCollection 2018.


A pilot study investigating whether quantitative sensory testing alters after treatment in patients with fibromyalgia.

Wodehouse T, Poply K, Ramaswamy S, Snidvongs S, Bourke J, Tahir H, Ullrich K, Mehta V.

Br J Pain. 2018 Nov;12(4):250-256. doi: 10.1177/2049463718776336. Epub 2018 May 15.


Characterizing the Somatosensory Profile of Patients With Failed Back Surgery Syndrome With Unilateral Lumbar Radiculopathy Undergoing Spinal Cord Stimulation: A Single Center Prospective Pilot Study.

Ramaswamy S, Wodehouse T, Langford R, Thomson S, Taylor R, Mehta V.

Neuromodulation. 2019 Apr;22(3):333-340. doi: 10.1111/ner.12862. Epub 2018 Oct 10.


Defect Unbinding in Active Nematics.

Shankar S, Ramaswamy S, Marchetti MC, Bowick MJ.

Phys Rev Lett. 2018 Sep 7;121(10):108002. doi: 10.1103/PhysRevLett.121.108002.


The Sodium Sialic Acid Symporter From Staphylococcus aureus Has Altered Substrate Specificity.

North RA, Wahlgren WY, Remus DM, Scalise M, Kessans SA, Dunevall E, Claesson E, Soares da Costa TP, Perugini MA, Ramaswamy S, Allison JR, Indiveri C, Friemann R, Dobson RCJ.

Front Chem. 2018 Jul 4;6:233. doi: 10.3389/fchem.2018.00233. eCollection 2018.


Breakpoint mapping of a novel de novo translocation t(X;20)(q11.1;p13) by positional cloning and long read sequencing.

Dutta UR, Rao SN, Pidugu VK, V S V, Bhattacherjee A, Bhowmik AD, Ramaswamy SK, Singh KG, Dalal A.

Genomics. 2019 Sep;111(5):1108-1114. doi: 10.1016/j.ygeno.2018.07.005. Epub 2018 Jul 10.


Electroencephalogram Based Detection of Deep Sedation in ICU Patients Using Atomic Decomposition.

Nagaraj SB, McClain LM, Boyle EJ, Zhou DW, Ramaswamy SM, Biswal S, Akeju O, Purdon PL, Westover MB.

IEEE Trans Biomed Eng. 2018 Dec;65(12):2684-2691. doi: 10.1109/TBME.2018.2813265. Epub 2018 Mar 7.


Stem Cell Cytoskeletal Responses to Pulsatile Flow in Heart Valve Tissue Engineering Studies.

Castellanos G, Nasim S, Almora DM, Rath S, Ramaswamy S.

Front Cardiovasc Med. 2018 Jun 5;5:58. doi: 10.3389/fcvm.2018.00058. eCollection 2018.


Macroporous Dual-compartment Hydrogels for Minimally Invasive Transplantation of Primary Human Hepatocytes.

Seale N, Ramaswamy S, Shih YR, Verma I, Varghese S.

Transplantation. 2018 Sep;102(9):e373-e381. doi: 10.1097/TP.0000000000002330.


A nonequilibrium force can stabilize 2D active nematics.

Maitra A, Srivastava P, Marchetti MC, Lintuvuori JS, Ramaswamy S, Lenz M.

Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):6934-6939. doi: 10.1073/pnas.1720607115. Epub 2018 Jun 18.


Decreased expression of cell adhesion genes in cancer stem-like cells isolated from primary oral squamous cell carcinomas.

Mishra A, Sriram H, Chandarana P, Tanavde V, Kumar RV, Gopinath A, Govindarajan R, Ramaswamy S, Sadasivam S.

Tumour Biol. 2018 May;40(5):1010428318780859. doi: 10.1177/1010428318780859.


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