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Items: 49

1.

Anti-inflammatory and immune-modulating effects of rice callus suspension culture (RCSC) and bioactive fractions in an in vitro inflammatory bowel disease model.

Driscoll K, Deshpande A, Chapp A, Li K, Datta R, Ramakrishna W.

Phytomedicine. 2019 Apr;57:364-376. doi: 10.1016/j.phymed.2018.12.034. Epub 2018 Dec 31.

PMID:
30831485
2.

Proteomics provides insights into biological pathways altered by plant growth promoting bacteria and arbuscular mycorrhiza in sorghum grown in marginal soil.

Dhawi F, Datta R, Ramakrishna W.

Biochim Biophys Acta Proteins Proteom. 2017 Feb;1865(2):243-251. doi: 10.1016/j.bbapap.2016.11.015. Epub 2016 Nov 29.

PMID:
27913282
3.

Rice callus suspension culture inhibits growth of cell lines of multiple cancer types and induces apoptosis in lung cancer cell line.

Rahman N, Dhadi SR, Deshpande A, Ramakrishna W.

BMC Complement Altern Med. 2016 Nov 2;16(1):427.

4.

Mycorrhiza and heavy metal resistant bacteria enhance growth, nutrient uptake and alter metabolic profile of sorghum grown in marginal soil.

Dhawi F, Datta R, Ramakrishna W.

Chemosphere. 2016 Aug;157:33-41. doi: 10.1016/j.chemosphere.2016.04.112. Epub 2016 May 18.

PMID:
27208643
5.

Identification of Biochemical Pathways Associated with Lead Tolerance and Detoxification in Chrysopogon zizanioides L. Nash (Vetiver) by Metabolic Profiling.

Pidatala VR, Li K, Sarkar D, Ramakrishna W, Datta R.

Environ Sci Technol. 2016 Mar 1;50(5):2530-7. doi: 10.1021/acs.est.5b04725. Epub 2016 Feb 17.

PMID:
26843403
6.

Prohibitin as the Molecular Binding Switch in the Retinal Pigment Epithelium.

Sripathi SR, Sylvester O, He W, Moser T, Um JY, Lamoke F, Ramakrishna W, Bernstein PS, Bartoli M, Jahng WJ.

Protein J. 2016 Feb;35(1):1-16. doi: 10.1007/s10930-015-9641-y.

7.

Mycorrhiza and PGPB modulate maize biomass, nutrient uptake and metabolic pathways in maize grown in mining-impacted soil.

Dhawi F, Datta R, Ramakrishna W.

Plant Physiol Biochem. 2015 Dec;97:390-9. doi: 10.1016/j.plaphy.2015.10.028. Epub 2015 Oct 28.

PMID:
26546782
8.

Differential regulation of genes by retrotransposons in rice promoters.

Dhadi SR, Xu Z, Shaik R, Driscoll K, Ramakrishna W.

Plant Mol Biol. 2015 Apr;87(6):603-13. doi: 10.1007/s11103-015-0300-7. Epub 2015 Feb 20.

PMID:
25697955
9.

Integrated metabolomic and proteomic approaches dissect the effect of metal-resistant bacteria on maize biomass and copper uptake.

Li K, Pidatala VR, Shaik R, Datta R, Ramakrishna W.

Environ Sci Technol. 2014 Jan 21;48(2):1184-93. doi: 10.1021/es4047395. Epub 2014 Jan 8.

PMID:
24383886
10.
11.

Genes and co-expression modules common to drought and bacterial stress responses in Arabidopsis and rice.

Shaik R, Ramakrishna W.

PLoS One. 2013 Oct 10;8(10):e77261. doi: 10.1371/journal.pone.0077261. eCollection 2013.

12.

Major cis-regulatory elements for rice bidirectional promoter activity reside in the 5'-untranslated regions.

Dhadi SR, Deshpande A, Driscoll K, Ramakrishna W.

Gene. 2013 Sep 10;526(2):400-10. doi: 10.1016/j.gene.2013.05.060. Epub 2013 Jun 10.

PMID:
23756196
13.

Bioinformatic analysis of epigenetic and microRNA mediated regulation of drought responsive genes in rice.

Shaik R, Ramakrishna W.

PLoS One. 2012;7(11):e49331. doi: 10.1371/journal.pone.0049331. Epub 2012 Nov 8.

14.

Mutational, proteomic and metabolomic analysis of a plant growth promoting copper-resistant Pseudomonas spp.

Li K, Pidatala RR, Ramakrishna W.

FEMS Microbiol Lett. 2012 Oct;335(2):140-8. doi: 10.1111/j.1574-6968.2012.02646.x. Epub 2012 Aug 21.

15.

Retrotransposon insertions in rice gene pairs associated with reduced conservation of gene pairs in grass genomes.

Krom N, Ramakrishna W.

Genomics. 2012 May;99(5):308-14. doi: 10.1016/j.ygeno.2012.02.006. Epub 2012 Mar 6.

16.

Anticancer activity of rice callus suspension culture.

Deshpande A, Dhadi SR, Hager EJ, Ramakrishna W.

Phytother Res. 2012 Jul;26(7):1075-81. doi: 10.1002/ptr.3699. Epub 2011 Dec 30.

PMID:
22213212
17.

Polymorphisms and evolutionary history of retrotransposon insertions in rice promoters.

Xu Z, Rafi S, Ramakrishna W.

Genome. 2011 Aug;54(8):629-38. doi: 10.1139/G11-030. Epub 2011 Aug 8.

PMID:
21823826
18.

Effect of multiple metal resistant bacteria from contaminated lake sediments on metal accumulation and plant growth.

Li K, Ramakrishna W.

J Hazard Mater. 2011 May 15;189(1-2):531-9. doi: 10.1016/j.jhazmat.2011.02.075. Epub 2011 Mar 1.

PMID:
21420236
19.

Conservation, rearrangement, and deletion of gene pairs during the evolution of four grass genomes.

Krom N, Ramakrishna W.

DNA Res. 2010 Dec;17(6):343-52. doi: 10.1093/dnares/dsq022. Epub 2010 Sep 23.

20.

Genome-wide comparative analysis of putative bidirectional promoters from rice, Arabidopsis and Populus.

Dhadi SR, Krom N, Ramakrishna W.

Gene. 2009 Jan 15;429(1-2):65-73. doi: 10.1016/j.gene.2008.09.034. Epub 2008 Oct 11.

PMID:
18973799
21.

On the tetraploid origin of the maize genome.

Swigonova Z, Lai J, Ma J, Ramakrishna W, Llaca V, Bennetzen JL, Messing J.

Comp Funct Genomics. 2004;5(3):281-4. doi: 10.1002/cfg.395.

22.

Frequent genic rearrangements in two regions of grass genomes identified by comparative sequence analysis.

Ramakrishna W, Ma J, Sanmiguel P, Emberton J, Dubcovsky J, Shiloff BA, Jiang Z, Rostoks N, Busso CS, Ogden M, Linton E, Kleinhofs A, Devos KM, Messing J, Bennetzen JL.

Comp Funct Genomics. 2002;3(2):165-6. doi: 10.1002/cfg.164. No abstract available.

23.

Comparative analysis of divergent and convergent gene pairs and their expression patterns in rice, Arabidopsis, and populus.

Krom N, Ramakrishna W.

Plant Physiol. 2008 Aug;147(4):1763-73. doi: 10.1104/pp.108.122416. Epub 2008 May 30.

24.

Retrotransposon insertion polymorphisms in six rice genes and their evolutionary history.

Xu Z, Ramakrishna W.

Gene. 2008 Apr 15;412(1-2):50-8. doi: 10.1016/j.gene.2008.01.012. Epub 2008 Jan 26.

PMID:
18291601
25.

Analysis of genes associated with retrotransposons in the rice genome.

Krom N, Recla J, Ramakrishna W.

Genetica. 2008 Nov;134(3):297-310. Epub 2007 Dec 9.

PMID:
18066688
26.

Differential expansion and expression of alpha- and beta-tubulin gene families in Populus.

Oakley RV, Wang YS, Ramakrishna W, Harding SA, Tsai CJ.

Plant Physiol. 2007 Nov;145(3):961-73. Epub 2007 Sep 20.

27.

Fine mapping of the Pc locus of Sorghum bicolor, a gene controlling the reaction to a fungal pathogen and its host-selective toxin.

Nagy ED, Lee TC, Ramakrishna W, Xu Z, Klein PE, SanMiguel P, Cheng CP, Li J, Devos KM, Schertz K, Dunkle L, Bennetzen JL.

Theor Appl Genet. 2007 Apr;114(6):961-70. Epub 2007 Mar 14.

PMID:
17356869
28.

Consistent over-estimation of gene number in complex plant genomes.

Bennetzen JL, Coleman C, Liu R, Ma J, Ramakrishna W.

Curr Opin Plant Biol. 2004 Dec;7(6):732-6. Review.

PMID:
15491923
29.

Gene loss and movement in the maize genome.

Lai J, Ma J, Swigonová Z, Ramakrishna W, Linton E, Llaca V, Tanyolac B, Park YJ, Jeong OY, Bennetzen JL, Messing J.

Genome Res. 2004 Oct;14(10A):1924-31.

30.

Close split of sorghum and maize genome progenitors.

Swigonová Z, Lai J, Ma J, Ramakrishna W, Llaca V, Bennetzen JL, Messing J.

Genome Res. 2004 Oct;14(10A):1916-23.

31.

The wheat VRN2 gene is a flowering repressor down-regulated by vernalization.

Yan L, Loukoianov A, Blechl A, Tranquilli G, Ramakrishna W, SanMiguel P, Bennetzen JL, Echenique V, Dubcovsky J.

Science. 2004 Mar 12;303(5664):1640-4.

32.

Genomic colinearity as a tool for plant gene isolation.

Ramakrishna W, Bennetzen JL.

Methods Mol Biol. 2003;236:109-22.

PMID:
14501061
33.

A novel small heat shock protein gene, vis1, contributes to pectin depolymerization and juice viscosity in tomato fruit.

Ramakrishna W, Deng Z, Ding CK, Handa AK, Ozminkowski RH Jr.

Plant Physiol. 2003 Feb;131(2):725-35.

34.

Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex.

Ramakrishna W, Emberton J, SanMiguel P, Ogden M, Llaca V, Messing J, Bennetzen JL.

Plant Physiol. 2002 Dec;130(4):1728-38.

35.

Cereal genes similar to Snf2 define a new subfamily that includes human and mouse genes.

Yan L, Echenique V, Busso C, SanMiguel P, Ramakrishna W, Bennetzen JL, Harrington S, Dubcovsky J.

Mol Genet Genomics. 2002 Dec;268(4):488-99. Epub 2002 Oct 24.

36.

Structural analysis of the maize rp1 complex reveals numerous sites and unexpected mechanisms of local rearrangement.

Ramakrishna W, Emberton J, Ogden M, SanMiguel P, Bennetzen JL.

Plant Cell. 2002 Dec;14(12):3213-23.

37.

Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes.

Ramakrishna W, Dubcovsky J, Park YJ, Busso C, Emberton J, SanMiguel P, Bennetzen JL.

Genetics. 2002 Nov;162(3):1389-400.

38.

The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences.

Stam M, Belele C, Ramakrishna W, Dorweiler JE, Bennetzen JL, Chandler VL.

Genetics. 2002 Oct;162(2):917-30.

39.

Exceptional haplotype variation in maize.

Bennetzen JL, Ramakrishna W.

Proc Natl Acad Sci U S A. 2002 Jul 9;99(14):9093-5. Epub 2002 Jul 1. No abstract available.

40.

Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5A(m).

SanMiguel PJ, Ramakrishna W, Bennetzen JL, Busso CS, Dubcovsky J.

Funct Integr Genomics. 2002 May;2(1-2):70-80. Epub 2002 Apr 12.

PMID:
12021852
41.

Genomic sequencing reveals gene content, genomic organization, and recombination relationships in barley.

Rostoks N, Park YJ, Ramakrishna W, Ma J, Druka A, Shiloff BA, SanMiguel PJ, Jiang Z, Brueggeman R, Sandhu D, Gill K, Bennetzen JL, Kleinhofs A.

Funct Integr Genomics. 2002 May;2(1-2):51-9. Epub 2002 Apr 25.

PMID:
12021850
42.

Numerous small rearrangements of gene content, order and orientation differentiate grass genomes.

Bennetzen JL, Ramakrishna W.

Plant Mol Biol. 2002 Mar-Apr;48(5-6):821-7.

PMID:
11999852
43.

Novel genes are enriched in normalized cDNA libraries from drought-stressed seedlings of rice (Oryza sativa L. subsp. indica cv. Nagina 22).

Reddy AR, Ramakrishna W, Sekhar AC, Ithal N, Babu PR, Bonaldo MF, Soares MB, Bennetzen JL.

Genome. 2002 Feb;45(1):204-11.

PMID:
11908663
44.

Potential of (GATA)n microsatellites from rice for inter- and intra-specific variability studies.

Davierwala AP, Ramakrishna W, Chowdari V, Ranjekar PK, Gupta VS.

BMC Evol Biol. 2001;1:7. Epub 2001 Oct 16.

45.

Comparative sequence analysis of colinear barley and rice bacterial artificial chromosomes.

Dubcovsky J, Ramakrishna W, SanMiguel PJ, Busso CS, Yan L, Shiloff BA, Bennetzen JL.

Plant Physiol. 2001 Mar;125(3):1342-53.

46.

Expansion of a (GA) dinucleotide at a microsatellite locus associated with domestication in rice.

Ramakrishna W, Davierwala AP, Gupta VS, Ranjekar PK.

Biochem Genet. 1998 Oct;36(9-10):323-7.

PMID:
9919358
47.

DNA fingerprinting detects genetic variability in the pearl millet downy mildew pathogen (Sclerospora graminicola).

Sastry JG, Ramakrishna W, Sivaramakrishnan S, Thakur RP, Gupta VS, Ranjekar PK.

Theor Appl Genet. 1995 Nov;91(6-7):856-61. doi: 10.1007/BF00223892.

PMID:
24169969
48.

DNA fingerprinting to detect genetic variation in rice using hypervariable DNA sequences.

Ramakrishna W, Chowdari KV, Lagu MD, Gupta VS, Ranjekar PK.

Theor Appl Genet. 1995 Jun;90(7-8):1000-6. doi: 10.1007/BF00222913.

PMID:
24173054
49.

(CAC)5 detects DNA fingerprints and sequences homologous to gene transcripts in rice.

Gupta VS, Ramakrishna W, Rawat SR, Ranjekar PK.

Biochem Genet. 1994 Feb;32(1-2):1-8.

PMID:
8031291

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