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Items: 16

1.

A Combined ELONA-(RT)qPCR Approach for Characterizing DNA and RNA Aptamers Selected against PCBP-2.

Moreno M, Fernández-Algar M, Fernández-Chamorro J, Ramajo J, Martínez-Salas E, Briones C.

Molecules. 2019 Mar 28;24(7). pii: E1213. doi: 10.3390/molecules24071213.

2.

Rab1b and ARF5 are novel RNA-binding proteins involved in FMDV IRES-driven RNA localization.

Fernandez-Chamorro J, Francisco-Velilla R, Ramajo J, Martinez-Salas E.

Life Sci Alliance. 2019 Jan 17;2(1). pii: e201800131. doi: 10.26508/lsa.201800131. Print 2019 Feb.

3.

The RNA-binding protein Gemin5 binds directly to the ribosome and regulates global translation.

Francisco-Velilla R, Fernandez-Chamorro J, Ramajo J, Martinez-Salas E.

Nucleic Acids Res. 2016 Sep 30;44(17):8335-51. doi: 10.1093/nar/gkw702. Epub 2016 Aug 9.

4.

RNAiFold2T: Constraint Programming design of thermo-IRES switches.

Garcia-Martin JA, Dotu I, Fernandez-Chamorro J, Lozano G, Ramajo J, Martinez-Salas E, Clote P.

Bioinformatics. 2016 Jun 15;32(12):i360-i368. doi: 10.1093/bioinformatics/btw265.

5.

Designing synthetic RNAs to determine the relevance of structural motifs in picornavirus IRES elements.

Fernandez-Chamorro J, Lozano G, Garcia-Martin JA, Ramajo J, Dotu I, Clote P, Martinez-Salas E.

Sci Rep. 2016 Apr 7;6:24243. doi: 10.1038/srep24243.

6.

Local RNA flexibility perturbation of the IRES element induced by a novel ligand inhibits viral RNA translation.

Lozano G, Trapote A, Ramajo J, Elduque X, Grandas A, Robles J, Pedroso E, Martínez-Salas E.

RNA Biol. 2015;12(5):555-68. doi: 10.1080/15476286.2015.1025190.

7.

Identification of novel non-canonical RNA-binding sites in Gemin5 involved in internal initiation of translation.

Fernandez-Chamorro J, Piñeiro D, Gordon JM, Ramajo J, Francisco-Velilla R, Macias MJ, Martinez-Salas E.

Nucleic Acids Res. 2014 May;42(9):5742-54. doi: 10.1093/nar/gku177. Epub 2014 Mar 5.

8.

Gemin5 promotes IRES interaction and translation control through its C-terminal region.

Piñeiro D, Fernández N, Ramajo J, Martínez-Salas E.

Nucleic Acids Res. 2013 Jan;41(2):1017-28. doi: 10.1093/nar/gks1212. Epub 2012 Dec 5.

9.

Gemin5 proteolysis reveals a novel motif to identify L protease targets.

Piñeiro D, Ramajo J, Bradrick SS, Martínez-Salas E.

Nucleic Acids Res. 2012 Jun;40(11):4942-53. doi: 10.1093/nar/gks172. Epub 2012 Feb 22.

10.

Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation.

Fernández N, Fernandez-Miragall O, Ramajo J, García-Sacristán A, Bellora N, Eyras E, Briones C, Martínez-Salas E.

Nucleic Acids Res. 2011 Oct;39(19):8572-85. doi: 10.1093/nar/gkr560. Epub 2011 Jul 8.

11.

Structural analysis provides insights into the modular organization of picornavirus IRES.

Fernández N, García-Sacristán A, Ramajo J, Briones C, Martínez-Salas E.

Virology. 2011 Jan 20;409(2):251-61. doi: 10.1016/j.virol.2010.10.013. Epub 2010 Nov 5.

12.

Rescue of internal initiation of translation by RNA complementation provides evidence for a distribution of functions between individual IRES domains.

Serrano P, Ramajo J, Martínez-Salas E.

Virology. 2009 May 25;388(1):221-9. doi: 10.1016/j.virol.2009.03.021. Epub 2009 Apr 21.

13.

A novel role for Gemin5 in mRNA translation.

Pacheco A, López de Quinto S, Ramajo J, Fernández N, Martínez-Salas E.

Nucleic Acids Res. 2009 Feb;37(2):582-90. doi: 10.1093/nar/gkn979. Epub 2008 Dec 9.

14.

Differential factor requirement to assemble translation initiation complexes at the alternative start codons of foot-and-mouth disease virus RNA.

Andreev DE, Fernandez-Miragall O, Ramajo J, Dmitriev SE, Terenin IM, Martinez-Salas E, Shatsky IN.

RNA. 2007 Aug;13(8):1366-74. Epub 2007 Jun 25.

15.
16.

Specific interference between two unrelated internal ribosome entry site elements impairs translation efficiency.

Reigadas S, Pacheco A, Ramajo J, López de Quinto S, Martinez-Salas E.

FEBS Lett. 2005 Dec 19;579(30):6803-8. Epub 2005 Nov 28.

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